Wall clock time and date at job start Wed Apr 1 2020 04:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.19273 * 2 1 4 4 C 1.54132 * 113.65820 * 226.39903 * 2 1 3 5 5 H 1.09001 * 113.94336 * 94.79198 * 4 2 1 6 6 N 1.46501 * 113.84995 * 322.69775 * 4 2 1 7 7 C 1.34776 * 120.00213 * 160.80642 * 6 4 2 8 8 O 1.21280 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00060 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47197 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47495 * 180.02562 * 10 9 7 12 12 C 1.35355 * 126.90714 * 274.68805 * 11 10 9 13 13 N 1.33781 * 106.49412 * 179.90253 * 12 11 10 14 14 N 1.28638 * 108.88604 * 0.36420 * 13 12 11 15 15 N 1.28724 * 110.17733 * 359.77095 * 14 13 12 16 16 H 0.96997 * 125.86913 * 179.97438 * 15 14 13 17 17 C 1.50005 * 84.43247 * 208.75126 * 4 2 1 18 18 H 1.09001 * 112.50646 * 284.92021 * 17 4 2 19 19 C 1.51205 * 126.16383 * 141.42477 * 17 4 2 20 20 C 1.54093 * 106.19872 * 199.84766 * 19 17 4 21 21 C 1.52499 * 112.59634 * 55.48738 * 20 19 17 22 22 N 1.49309 * 111.82786 * 312.78558 * 21 20 19 23 23 C 1.36928 * 123.81117 * 231.91361 * 22 21 20 24 24 H 1.08006 * 120.00083 * 147.62319 * 23 22 21 25 25 C 1.38809 * 120.00371 * 327.62568 * 23 22 21 26 26 N 1.31625 * 120.00342 * 164.97033 * 25 23 22 27 27 Si 1.86805 * 119.99871 * 344.97233 * 25 23 22 28 28 H 1.48503 * 109.46802 * 85.36406 * 27 25 23 29 29 H 1.48497 * 109.47172 * 205.36234 * 27 25 23 30 30 H 1.48496 * 109.47028 * 325.36739 * 27 25 23 31 31 C 1.45383 * 113.01820 * 52.41761 * 22 21 20 32 32 H 1.08998 * 112.09036 * 59.24773 * 31 22 21 33 33 H 1.09007 * 109.46963 * 287.32129 * 1 2 3 34 34 H 1.08996 * 109.47483 * 47.32502 * 1 2 3 35 35 H 1.09006 * 109.46822 * 167.32464 * 1 2 3 36 36 H 1.08997 * 109.47152 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47159 * 299.97075 * 3 2 1 38 38 H 1.09001 * 109.46722 * 59.96210 * 3 2 1 39 39 H 0.97003 * 119.99758 * 340.80928 * 6 4 2 40 40 H 1.08996 * 109.47658 * 300.00097 * 9 7 6 41 41 H 1.09005 * 109.47146 * 60.00261 * 9 7 6 42 42 H 1.09009 * 109.46913 * 300.00325 * 10 9 7 43 43 H 1.08991 * 109.47494 * 59.99819 * 10 9 7 44 44 H 1.07997 * 126.75435 * 0.03193 * 12 11 10 45 45 H 1.08997 * 110.10041 * 80.67306 * 19 17 4 46 46 H 1.08995 * 110.19406 * 319.06897 * 19 17 4 47 47 H 1.08991 * 108.84250 * 176.25848 * 20 19 17 48 48 H 1.09000 * 108.83891 * 294.71791 * 20 19 17 49 49 H 1.09001 * 108.99756 * 73.77486 * 21 20 19 50 50 H 1.08993 * 109.00233 * 192.55063 * 21 20 19 51 51 H 0.97001 * 119.99908 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1326 1.4064 0.0000 4 6 2.1485 -0.9736 -1.0224 5 1 2.4023 -0.5111 -1.9762 6 7 1.4100 -2.2308 -1.1650 7 6 1.5865 -2.9955 -2.2607 8 8 2.3572 -2.6432 -3.1283 9 6 0.8272 -4.2890 -2.4071 10 6 1.2086 -4.9573 -3.7295 11 6 0.4488 -6.2505 -3.8763 12 6 0.7998 -7.4602 -3.3807 13 7 -0.1613 -8.3148 -3.7488 14 7 -1.0447 -7.6782 -4.4338 15 7 -0.7184 -6.4371 -4.5349 16 1 -1.2224 -5.7532 -5.0030 17 6 3.2890 -1.0395 -0.0502 18 1 3.9112 -0.1449 -0.0757 19 6 4.0876 -2.2731 0.3061 20 6 4.7655 -1.9710 1.6565 21 6 3.7671 -1.5669 2.7360 22 7 2.8014 -0.5405 2.2429 23 6 2.5492 0.6406 2.8880 24 1 2.2993 1.5241 2.3192 25 6 2.6148 0.7027 4.2732 26 7 2.6684 1.8707 4.8779 27 14 2.6272 -0.8713 5.2791 28 1 4.0184 -1.3796 5.3858 29 1 2.0958 -0.5945 6.6379 30 1 1.7773 -1.8909 4.6133 31 6 2.1420 -0.9280 1.0065 32 1 1.5851 -1.8589 1.1132 33 1 -0.3633 0.3060 0.9811 34 1 -0.3634 0.6965 -0.7555 35 1 -0.3633 -1.0027 -0.2255 36 1 3.2202 1.3356 0.0005 37 1 1.8038 1.9425 -0.8902 38 1 1.8028 1.9429 0.8897 39 1 0.7938 -2.5127 -0.4709 40 1 1.0773 -4.9528 -1.5796 41 1 -0.2435 -4.0848 -2.3983 42 1 0.9588 -4.2936 -4.5573 43 1 2.2791 -5.1616 -3.7380 44 1 1.6812 -7.6898 -2.8004 45 1 4.8417 -2.4645 -0.4572 46 1 3.4265 -3.1342 0.4032 47 1 5.3016 -2.8602 1.9880 48 1 5.4810 -1.1605 1.5176 49 1 3.2189 -2.4511 3.0612 50 1 4.3109 -1.1555 3.5863 51 1 2.7147 1.9140 5.8458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689147405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:20 Heat of formation + Delta-G solvation = 131.297854 kcal Electronic energy + Delta-G solvation = -31835.885794 eV Core-core repulsion = 27775.025268 eV Total energy + Delta-G solvation = -4060.860527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.66548 -41.52747 -39.21362 -35.65941 -34.77856 -33.55068 -33.47062 -32.93727 -30.90865 -30.29735 -29.53748 -27.24707 -26.29673 -25.55205 -24.43890 -23.32867 -22.44920 -22.09245 -20.93568 -20.62849 -19.51568 -18.64626 -18.24136 -17.24470 -16.89060 -16.40414 -15.92944 -15.54842 -15.22469 -14.78026 -14.71318 -14.36917 -14.09511 -13.94625 -13.84130 -13.61077 -13.20828 -13.10809 -12.85025 -12.74508 -12.55857 -12.41687 -12.11677 -11.74357 -11.72548 -11.58502 -11.50448 -11.33711 -11.23108 -11.19465 -10.95343 -10.70835 -10.52897 -10.49585 -10.16792 -9.99783 -9.84858 -9.80021 -9.54227 -9.50900 -9.07026 -8.86335 -8.46333 -6.79831 -5.97937 -3.40459 1.14855 2.18533 2.33996 2.52524 3.06263 3.27282 3.42746 3.44892 4.03994 4.26660 4.45034 4.48327 4.55125 4.55579 4.69942 4.79745 4.83607 4.94895 5.04767 5.10183 5.11845 5.29574 5.40809 5.48604 5.52077 5.54336 5.60746 5.71931 5.76725 5.79371 5.82258 5.93647 5.98618 6.02733 6.18356 6.28419 6.32309 6.35913 6.38602 6.42929 6.44636 6.52219 6.56868 6.68398 6.72490 6.80397 6.84888 7.07347 7.45974 7.90105 8.07358 8.14651 8.37280 8.86413 9.67062 10.17571 11.17396 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.002636 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.407370 B =10617.985567 C =11150.765915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.142 3.858 5 H 0.095 0.905 6 N -0.702 5.702 7 C 0.516 3.484 8 O -0.541 6.541 9 C -0.139 4.139 10 C -0.032 4.032 11 C -0.006 4.006 12 C -0.045 4.045 13 N -0.266 5.266 14 N -0.084 5.084 15 N -0.390 5.390 16 H 0.448 0.552 17 C -0.171 4.171 18 H 0.106 0.894 19 C -0.082 4.082 20 C -0.129 4.129 21 C 0.123 3.877 22 N -0.588 5.588 23 C -0.255 4.255 24 H 0.100 0.900 25 C 0.025 3.975 26 N -0.912 5.912 27 Si 0.885 3.115 28 H -0.287 1.287 29 H -0.305 1.305 30 H -0.274 1.274 31 C 0.148 3.852 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.401 0.599 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.192 0.808 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.021 0.979 50 H 0.070 0.930 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -10.973 -16.215 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.179 4.179 4 C 0.036 3.964 5 H 0.113 0.887 6 N -0.354 5.354 7 C 0.302 3.698 8 O -0.419 6.419 9 C -0.180 4.180 10 C -0.072 4.072 11 C -0.140 4.140 12 C -0.203 4.203 13 N -0.133 5.133 14 N -0.064 5.064 15 N -0.111 5.111 16 H 0.293 0.707 17 C -0.192 4.192 18 H 0.124 0.876 19 C -0.120 4.120 20 C -0.169 4.169 21 C -0.002 4.002 22 N -0.312 5.312 23 C -0.382 4.382 24 H 0.117 0.883 25 C -0.174 4.174 26 N -0.555 5.555 27 Si 0.716 3.284 28 H -0.215 1.215 29 H -0.233 1.233 30 H -0.200 1.200 31 C 0.040 3.960 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.238 0.762 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.209 0.791 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.039 0.961 50 H 0.088 0.912 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.565 -11.789 -16.907 21.111 hybrid contribution 0.183 0.170 1.298 1.321 sum -4.381 -11.619 -15.610 19.946 Atomic orbital electron populations 1.21696 0.94685 1.00553 1.02348 1.21560 0.94814 0.95662 0.94552 1.21768 1.01089 0.93152 1.01885 1.21147 0.92642 0.84283 0.98283 0.88658 1.45812 1.45365 1.22373 1.21836 1.20401 0.82489 0.85275 0.81667 1.90713 1.37252 1.72828 1.41082 1.21674 1.01480 0.95334 0.99497 1.19871 1.00292 0.89297 0.97701 1.22358 0.90449 0.99671 1.01544 1.23492 1.01947 0.89037 1.05778 1.75126 1.00940 1.26992 1.10234 1.78315 1.21310 0.88957 1.17838 1.45163 1.17732 1.10321 1.37852 0.70694 1.23355 0.97104 0.99846 0.98894 0.87646 1.20970 0.98272 0.96681 0.96078 1.21893 0.98838 1.00233 0.95893 1.21543 0.91034 0.91775 0.95820 1.44420 1.41472 1.18892 1.26375 1.19114 1.43574 0.86511 0.89042 0.88302 1.25479 0.99134 0.95997 0.96759 1.69775 1.53225 1.23232 1.09237 0.86925 0.77474 0.84839 0.79133 1.21469 1.23314 1.19966 1.21822 0.92841 0.94717 0.86603 0.93563 0.91531 0.92979 0.93513 0.91638 0.93902 0.89650 0.76213 0.88050 0.88913 0.89430 0.87639 0.79106 0.93334 0.93084 0.92924 0.92182 0.96083 0.91198 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.18 37.16 0.34 -1.45 16 2 C -0.06 -0.97 1.38 -160.05 -0.22 -1.19 16 3 C -0.12 -1.95 8.07 37.16 0.30 -1.65 16 4 C 0.14 1.92 3.83 -75.77 -0.29 1.63 16 5 H 0.10 1.37 7.61 -51.93 -0.40 0.98 16 6 N -0.70 -7.67 4.13 -61.66 -0.25 -7.92 16 7 C 0.52 5.34 7.83 -10.99 -0.09 5.25 16 8 O -0.54 -7.52 15.66 5.56 0.09 -7.43 16 9 C -0.14 -0.88 5.68 -27.88 -0.16 -1.04 16 10 C -0.03 -0.19 5.07 -27.88 -0.14 -0.33 16 11 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 12 C -0.05 -0.38 11.99 -17.73 -0.21 -0.59 16 13 N -0.27 -3.01 12.41 30.24 0.38 -2.63 16 14 N -0.08 -0.87 13.38 60.35 0.81 -0.06 16 15 N -0.39 -2.63 6.98 33.54 0.23 -2.39 16 16 H 0.45 1.41 8.96 -190.40 -1.71 -0.29 16 17 C -0.17 -2.66 3.07 -95.83 -0.29 -2.95 16 18 H 0.11 1.82 5.85 -51.93 -0.30 1.51 16 19 C -0.08 -1.23 5.94 -27.07 -0.16 -1.40 16 20 C -0.13 -2.15 5.91 -26.42 -0.16 -2.31 16 21 C 0.12 2.50 4.26 -2.74 -0.01 2.48 16 22 N -0.59 -12.69 2.63 -172.27 -0.45 -13.14 16 23 C -0.25 -6.50 9.77 -15.06 -0.15 -6.64 16 24 H 0.10 2.62 4.82 -52.48 -0.25 2.37 16 25 C 0.03 0.70 5.38 -17.43 -0.09 0.61 16 26 N -0.91 -26.82 13.97 55.49 0.78 -26.04 16 27 Si 0.89 21.69 24.46 -169.99 -4.16 17.53 16 28 H -0.29 -6.83 6.41 56.52 0.36 -6.47 16 29 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 30 H -0.27 -6.60 6.84 56.52 0.39 -6.22 16 31 C 0.15 2.56 2.91 -75.19 -0.22 2.34 16 32 H 0.05 0.78 6.45 -51.93 -0.33 0.45 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.52 6.22 -51.93 -0.32 0.19 16 36 H 0.06 1.10 5.90 -51.93 -0.31 0.80 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.60 5.66 -51.93 -0.29 1.30 16 39 H 0.40 3.87 6.09 -40.82 -0.25 3.62 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.51 8.10 -51.92 -0.42 0.09 16 43 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 50 H 0.07 1.57 4.96 -51.93 -0.26 1.32 16 51 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -33.10 386.10 -7.90 -41.00 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -9.04 Total: 3.09 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.09 Total: -7.83 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 1.48 Total: -52.19 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.09 Total: -7.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.16 Total: 17.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.10 -7.90 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689147405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.294 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds