Wall clock time and date at job start Wed Apr 1 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.19273 * 2 1 4 4 C 1.54132 * 113.65820 * 226.39903 * 2 1 3 5 5 H 1.09001 * 113.94336 * 94.79198 * 4 2 1 6 6 N 1.46501 * 113.84995 * 322.69775 * 4 2 1 7 7 C 1.34776 * 120.00213 * 160.80642 * 6 4 2 8 8 O 1.21280 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00060 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47197 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47495 * 180.02562 * 10 9 7 12 12 C 1.35355 * 126.90714 * 274.68805 * 11 10 9 13 13 N 1.33781 * 106.49412 * 179.90253 * 12 11 10 14 14 N 1.28638 * 108.88604 * 0.36420 * 13 12 11 15 15 N 1.28724 * 110.17733 * 359.77095 * 14 13 12 16 16 H 0.96997 * 125.86913 * 179.97438 * 15 14 13 17 17 C 1.50005 * 84.43247 * 208.75126 * 4 2 1 18 18 H 1.09001 * 112.50646 * 284.92021 * 17 4 2 19 19 C 1.51205 * 126.16383 * 141.42477 * 17 4 2 20 20 C 1.54093 * 106.19872 * 199.84766 * 19 17 4 21 21 C 1.52499 * 112.59634 * 55.48738 * 20 19 17 22 22 N 1.49309 * 111.82786 * 312.78558 * 21 20 19 23 23 C 1.36928 * 123.81117 * 231.91361 * 22 21 20 24 24 H 1.08006 * 120.00083 * 147.62319 * 23 22 21 25 25 C 1.38809 * 120.00371 * 327.62568 * 23 22 21 26 26 N 1.31625 * 120.00342 * 164.97033 * 25 23 22 27 27 Si 1.86805 * 119.99871 * 344.97233 * 25 23 22 28 28 H 1.48503 * 109.46802 * 85.36406 * 27 25 23 29 29 H 1.48497 * 109.47172 * 205.36234 * 27 25 23 30 30 H 1.48496 * 109.47028 * 325.36739 * 27 25 23 31 31 C 1.45383 * 113.01820 * 52.41761 * 22 21 20 32 32 H 1.08998 * 112.09036 * 59.24773 * 31 22 21 33 33 H 1.09007 * 109.46963 * 287.32129 * 1 2 3 34 34 H 1.08996 * 109.47483 * 47.32502 * 1 2 3 35 35 H 1.09006 * 109.46822 * 167.32464 * 1 2 3 36 36 H 1.08997 * 109.47152 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47159 * 299.97075 * 3 2 1 38 38 H 1.09001 * 109.46722 * 59.96210 * 3 2 1 39 39 H 0.97003 * 119.99758 * 340.80928 * 6 4 2 40 40 H 1.08996 * 109.47658 * 300.00097 * 9 7 6 41 41 H 1.09005 * 109.47146 * 60.00261 * 9 7 6 42 42 H 1.09009 * 109.46913 * 300.00325 * 10 9 7 43 43 H 1.08991 * 109.47494 * 59.99819 * 10 9 7 44 44 H 1.07997 * 126.75435 * 0.03193 * 12 11 10 45 45 H 1.08997 * 110.10041 * 80.67306 * 19 17 4 46 46 H 1.08995 * 110.19406 * 319.06897 * 19 17 4 47 47 H 1.08991 * 108.84250 * 176.25848 * 20 19 17 48 48 H 1.09000 * 108.83891 * 294.71791 * 20 19 17 49 49 H 1.09001 * 108.99756 * 73.77486 * 21 20 19 50 50 H 1.08993 * 109.00233 * 192.55063 * 21 20 19 51 51 H 0.97001 * 119.99908 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1326 1.4064 0.0000 4 6 2.1485 -0.9736 -1.0224 5 1 2.4023 -0.5111 -1.9762 6 7 1.4100 -2.2308 -1.1650 7 6 1.5865 -2.9955 -2.2607 8 8 2.3572 -2.6432 -3.1283 9 6 0.8272 -4.2890 -2.4071 10 6 1.2086 -4.9573 -3.7295 11 6 0.4488 -6.2505 -3.8763 12 6 0.7998 -7.4602 -3.3807 13 7 -0.1613 -8.3148 -3.7488 14 7 -1.0447 -7.6782 -4.4338 15 7 -0.7184 -6.4371 -4.5349 16 1 -1.2224 -5.7532 -5.0030 17 6 3.2890 -1.0395 -0.0502 18 1 3.9112 -0.1449 -0.0757 19 6 4.0876 -2.2731 0.3061 20 6 4.7655 -1.9710 1.6565 21 6 3.7671 -1.5669 2.7360 22 7 2.8014 -0.5405 2.2429 23 6 2.5492 0.6406 2.8880 24 1 2.2993 1.5241 2.3192 25 6 2.6148 0.7027 4.2732 26 7 2.6684 1.8707 4.8779 27 14 2.6272 -0.8713 5.2791 28 1 4.0184 -1.3796 5.3858 29 1 2.0958 -0.5945 6.6379 30 1 1.7773 -1.8909 4.6133 31 6 2.1420 -0.9280 1.0065 32 1 1.5851 -1.8589 1.1132 33 1 -0.3633 0.3060 0.9811 34 1 -0.3634 0.6965 -0.7555 35 1 -0.3633 -1.0027 -0.2255 36 1 3.2202 1.3356 0.0005 37 1 1.8038 1.9425 -0.8902 38 1 1.8028 1.9429 0.8897 39 1 0.7938 -2.5127 -0.4709 40 1 1.0773 -4.9528 -1.5796 41 1 -0.2435 -4.0848 -2.3983 42 1 0.9588 -4.2936 -4.5573 43 1 2.2791 -5.1616 -3.7380 44 1 1.6812 -7.6898 -2.8004 45 1 4.8417 -2.4645 -0.4572 46 1 3.4265 -3.1342 0.4032 47 1 5.3016 -2.8602 1.9880 48 1 5.4810 -1.1605 1.5176 49 1 3.2189 -2.4511 3.0612 50 1 4.3109 -1.1555 3.5863 51 1 2.7147 1.9140 5.8458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689147405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:19 Heat of formation + Delta-G solvation = 107.986753 kcal Electronic energy + Delta-G solvation = -31836.896640 eV Core-core repulsion = 27775.025268 eV Total energy + Delta-G solvation = -4061.871372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.26570 -42.74167 -40.13293 -37.10788 -35.38477 -34.86125 -34.33258 -34.09288 -32.64406 -31.08042 -30.68390 -28.51123 -27.58412 -26.84120 -25.52363 -23.96053 -23.87784 -22.77318 -22.36832 -21.49891 -20.71135 -19.55555 -19.20795 -18.68015 -18.03096 -17.09549 -17.00917 -16.65583 -16.54565 -15.93279 -15.46720 -15.44560 -15.35194 -15.16688 -14.94321 -14.87961 -14.41764 -14.23161 -14.05980 -13.98054 -13.89893 -13.31162 -13.22405 -13.11906 -12.86605 -12.77851 -12.71638 -12.64974 -12.28170 -12.21233 -11.95231 -11.92514 -11.75817 -11.60523 -11.57102 -11.45966 -11.28767 -11.16812 -10.86442 -10.63904 -10.25862 -10.12417 -9.88772 -8.56402 -8.07215 -5.43688 0.58170 1.31193 1.40686 1.48859 1.55285 1.74082 1.87902 2.23411 2.47414 3.08208 3.22645 3.47014 3.51557 3.67412 3.73046 3.87868 3.92825 4.05099 4.07056 4.13756 4.19144 4.32244 4.35842 4.41627 4.46368 4.52117 4.57754 4.64815 4.66934 4.79229 4.86000 4.90516 4.97302 5.03659 5.06201 5.08480 5.10539 5.15921 5.18698 5.22285 5.24737 5.27565 5.36730 5.45655 5.54970 5.56722 5.79981 5.97800 6.01326 6.37293 6.63372 6.96410 7.34473 7.45341 7.68643 8.25856 9.11907 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.002636 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.407370 B =10617.985567 C =11150.765915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 C -0.117 4.117 4 C 0.166 3.834 5 H 0.092 0.908 6 N -0.699 5.699 7 C 0.519 3.481 8 O -0.575 6.575 9 C -0.130 4.130 10 C -0.024 4.024 11 C 0.011 3.989 12 C -0.056 4.056 13 N -0.305 5.305 14 N -0.114 5.114 15 N -0.374 5.374 16 H 0.462 0.538 17 C -0.162 4.162 18 H 0.084 0.916 19 C -0.075 4.075 20 C -0.123 4.123 21 C 0.118 3.882 22 N -0.604 5.604 23 C -0.226 4.226 24 H 0.081 0.919 25 C -0.038 4.038 26 N -0.964 5.964 27 Si 0.939 3.061 28 H -0.279 1.279 29 H -0.320 1.320 30 H -0.263 1.263 31 C 0.131 3.869 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.411 0.589 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.212 0.788 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.029 0.971 50 H 0.042 0.958 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -13.441 -18.319 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.069 4.069 3 C -0.174 4.174 4 C 0.059 3.941 5 H 0.110 0.890 6 N -0.351 5.351 7 C 0.308 3.692 8 O -0.455 6.455 9 C -0.170 4.170 10 C -0.064 4.064 11 C -0.124 4.124 12 C -0.213 4.213 13 N -0.171 5.171 14 N -0.093 5.093 15 N -0.098 5.098 16 H 0.311 0.689 17 C -0.183 4.183 18 H 0.102 0.898 19 C -0.113 4.113 20 C -0.162 4.162 21 C -0.006 4.006 22 N -0.328 5.328 23 C -0.356 4.356 24 H 0.098 0.902 25 C -0.232 4.232 26 N -0.611 5.611 27 Si 0.770 3.230 28 H -0.206 1.206 29 H -0.249 1.249 30 H -0.187 1.187 31 C 0.024 3.976 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.249 0.751 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.229 0.771 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.158 -14.318 -19.064 24.394 hybrid contribution 0.403 1.014 1.811 2.115 sum -4.755 -13.304 -17.253 22.299 Atomic orbital electron populations 1.21663 0.93106 1.02585 1.01469 1.21566 0.96082 0.94848 0.94404 1.21646 1.00216 0.94252 1.01320 1.20741 0.91316 0.84976 0.97083 0.88973 1.45747 1.45285 1.21450 1.22612 1.21013 0.81846 0.85875 0.80493 1.90716 1.38840 1.73778 1.42152 1.21675 1.02137 0.93135 1.00101 1.19826 0.99999 0.88675 0.97884 1.22404 0.90014 0.99490 1.00540 1.23958 1.02160 0.89199 1.06023 1.75091 1.02118 1.28467 1.11448 1.78260 1.21923 0.90256 1.18910 1.45192 1.17666 1.09832 1.37067 0.68920 1.23266 0.96798 0.99532 0.98726 0.89824 1.20929 0.98601 0.96654 0.95085 1.21812 0.97745 1.00855 0.95816 1.21595 0.91373 0.91228 0.96375 1.44553 1.42889 1.18124 1.27190 1.19198 1.39802 0.87692 0.88865 0.90163 1.26053 1.00894 0.98153 0.98114 1.69913 1.57023 1.25224 1.08944 0.86022 0.77825 0.82082 0.77067 1.20604 1.24948 1.18733 1.22206 0.94427 0.96043 0.84895 0.91786 0.93964 0.91583 0.90799 0.93062 0.91472 0.93072 0.75105 0.86358 0.86615 0.88896 0.87773 0.77137 0.92119 0.91445 0.90369 0.93391 0.95320 0.93973 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.18 71.98 0.66 -2.50 16 2 C -0.07 -1.91 1.38 -55.77 -0.08 -1.99 16 3 C -0.12 -3.76 8.07 71.98 0.58 -3.18 16 4 C 0.17 4.00 3.83 39.91 0.15 4.15 16 5 H 0.09 2.39 7.61 -2.39 -0.02 2.37 16 6 N -0.70 -12.25 4.13 -467.37 -1.93 -14.18 16 7 C 0.52 8.47 7.83 87.66 0.69 9.16 16 8 O -0.58 -13.89 15.66 -3.03 -0.05 -13.94 16 9 C -0.13 -1.00 5.68 29.85 0.17 -0.83 16 10 C -0.02 -0.19 5.07 29.85 0.15 -0.04 16 11 C 0.01 0.11 6.56 41.36 0.27 0.38 16 12 C -0.06 -0.78 11.99 83.73 1.00 0.22 16 13 N -0.31 -6.46 12.41 -58.25 -0.72 -7.18 16 14 N -0.11 -2.17 13.38 37.02 0.50 -1.68 16 15 N -0.37 -4.05 6.98 -47.79 -0.33 -4.38 16 16 H 0.46 1.58 8.96 -219.96 -1.97 -0.39 16 17 C -0.16 -4.69 3.07 -14.17 -0.04 -4.74 16 18 H 0.08 2.83 5.85 -2.39 -0.01 2.81 16 19 C -0.08 -1.99 5.94 30.38 0.18 -1.81 16 20 C -0.12 -3.81 5.91 30.80 0.18 -3.63 16 21 C 0.12 4.63 4.26 85.67 0.36 5.00 16 22 N -0.60 -25.70 2.63 -698.95 -1.84 -27.54 16 23 C -0.23 -11.83 9.77 84.03 0.82 -11.01 16 24 H 0.08 4.46 4.82 -2.91 -0.01 4.45 16 25 C -0.04 -2.16 5.38 84.86 0.46 -1.70 16 26 N -0.96 -59.28 13.97 21.65 0.30 -58.98 16 27 Si 0.94 45.58 24.46 68.60 1.68 47.25 16 28 H -0.28 -12.97 6.41 99.48 0.64 -12.33 16 29 H -0.32 -16.16 7.11 99.48 0.71 -15.46 16 30 H -0.26 -12.03 6.84 99.48 0.68 -11.35 16 31 C 0.13 4.26 2.91 40.89 0.12 4.38 16 32 H 0.06 1.92 6.45 -2.39 -0.02 1.90 16 33 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.35 6.22 -2.38 -0.01 1.34 16 36 H 0.05 1.76 5.90 -2.39 -0.01 1.75 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.99 5.66 -2.39 -0.01 1.98 16 39 H 0.41 5.87 6.09 -92.71 -0.56 5.31 16 40 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.09 0.70 8.10 -2.38 -0.02 0.68 16 43 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.60 7.95 -2.39 -0.02 1.58 16 47 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 48 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.03 1.09 7.13 -2.39 -0.02 1.07 16 50 H 0.04 1.88 4.96 -2.39 -0.01 1.86 16 51 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.14 386.10 1.63 -73.51 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -1.65 Total: 15.25 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.68 Total: -8.14 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -4.03 Total: -113.94 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.05 Total: -13.94 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.68 Total: 47.25 kcal Total: -75.14 1.63 -73.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689147405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.501 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds