Wall clock time and date at job start Wed Apr 1 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46726 * 2 1 4 4 N 1.31917 * 120.17431 * 263.38859 * 3 2 1 5 5 N 1.28281 * 122.32575 * 179.97438 * 4 3 2 6 6 C 1.31919 * 122.51917 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.01682 * 180.02562 * 6 5 4 8 8 C 1.38507 * 119.96336 * 359.73200 * 6 5 4 9 9 C 1.39732 * 120.16878 * 83.37349 * 3 2 1 10 10 C 1.48137 * 121.14781 * 0.02562 * 9 3 2 11 11 O 1.21522 * 119.99758 * 354.75617 * 10 9 3 12 12 N 1.34776 * 119.99804 * 174.75717 * 10 9 3 13 13 C 1.46501 * 119.99354 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46708 * 179.97438 * 13 12 10 15 15 N 1.46909 * 109.47135 * 179.97438 * 14 13 12 16 16 C 1.46896 * 110.99997 * 169.99867 * 15 14 13 17 17 C 1.53238 * 109.34035 * 172.74741 * 16 15 14 18 18 N 1.47072 * 108.52192 * 53.82828 * 17 16 15 19 19 C 1.36936 * 120.88134 * 128.79326 * 18 17 16 20 20 H 1.08001 * 120.00227 * 333.63790 * 19 18 17 21 21 C 1.38812 * 119.99935 * 153.63408 * 19 18 17 22 22 N 1.31629 * 119.99590 * 158.23861 * 21 19 18 23 23 Si 1.86792 * 120.00412 * 338.24064 * 21 19 18 24 24 H 1.48500 * 109.47239 * 90.02217 * 23 21 19 25 25 H 1.48501 * 109.47492 * 210.02500 * 23 21 19 26 26 H 1.48502 * 109.46920 * 330.02311 * 23 21 19 27 27 C 1.47080 * 118.24080 * 308.82202 * 18 17 16 28 28 C 1.46894 * 110.99607 * 45.69995 * 15 14 13 29 29 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47223 * 300.00213 * 1 2 3 31 31 H 1.09009 * 109.46967 * 59.99910 * 1 2 3 32 32 H 1.08995 * 109.47069 * 240.00303 * 2 1 3 33 33 H 1.08999 * 109.47038 * 119.99988 * 2 1 3 34 34 H 1.09000 * 109.46517 * 90.00793 * 7 6 5 35 35 H 1.08999 * 109.47216 * 210.00192 * 7 6 5 36 36 H 1.08997 * 109.47113 * 330.00587 * 7 6 5 37 37 H 1.07995 * 121.08793 * 180.30353 * 8 6 5 38 38 H 0.96998 * 120.00353 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47675 * 60.00041 * 13 12 10 40 40 H 1.08995 * 109.47525 * 299.99651 * 13 12 10 41 41 H 1.09001 * 109.47560 * 60.00261 * 14 13 12 42 42 H 1.09002 * 109.47577 * 299.99779 * 14 13 12 43 43 H 1.09009 * 109.49100 * 52.79040 * 16 15 14 44 44 H 1.08999 * 109.49626 * 292.70830 * 16 15 14 45 45 H 1.09000 * 109.62868 * 173.54248 * 17 16 15 46 46 H 1.09005 * 109.62677 * 293.92373 * 17 16 15 47 47 H 0.96998 * 119.99788 * 180.02562 * 22 21 19 48 48 H 1.08993 * 109.63215 * 170.89459 * 27 18 17 49 49 H 1.09012 * 109.62566 * 291.47302 * 27 18 17 50 50 H 1.09000 * 109.50034 * 67.29390 * 28 15 14 51 51 H 1.09003 * 109.51836 * 307.22263 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3771 2.0023 -1.1328 5 7 2.8091 3.2092 -1.1807 6 6 2.9404 3.9587 -0.1031 7 6 3.4532 5.3705 -0.2247 8 6 2.6010 3.4494 1.1394 9 6 2.1349 2.1294 1.2000 10 6 1.7571 1.5088 2.4909 11 8 1.2606 0.3999 2.5097 12 7 1.9640 2.1742 3.6446 13 6 1.5908 1.5602 4.9213 14 6 1.9293 2.5175 6.0658 15 7 1.5546 1.9021 7.3460 16 6 2.0760 2.6810 8.4771 17 6 1.5154 2.1134 9.7854 18 7 1.8095 0.6732 9.8339 19 6 2.4126 0.1156 10.9296 20 1 3.0484 0.7181 11.5613 21 6 2.2065 -1.2243 11.2285 22 7 3.0720 -1.8716 11.9798 23 14 0.7011 -2.1086 10.5645 24 1 1.0218 -2.7093 9.2448 25 1 0.2984 -3.1796 11.5111 26 1 -0.4138 -1.1400 10.4096 27 6 1.4395 -0.1521 8.6741 28 6 2.0031 0.5048 7.4095 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6141 6.0503 -0.3726 35 1 3.9856 5.6435 0.6864 36 1 4.1307 5.4390 -1.0758 37 1 2.6967 4.0485 2.0328 38 1 2.3606 3.0593 3.6296 39 1 2.1424 0.6292 5.0517 40 1 0.5209 1.3523 4.9255 41 1 1.3781 3.4488 5.9357 42 1 2.9994 2.7251 6.0615 43 1 1.7717 3.7225 8.3725 44 1 3.1641 2.6192 8.4906 45 1 1.9864 2.6121 10.6325 46 1 0.4374 2.2713 9.8209 47 1 2.9283 -2.8079 12.1884 48 1 1.8603 -1.1512 8.7865 49 1 0.3536 -0.2151 8.6011 50 1 3.0922 0.4731 7.4378 51 1 1.6463 -0.0325 6.5308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690074823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:42 Heat of formation + Delta-G solvation = 61.976920 kcal Electronic energy + Delta-G solvation = -30452.946222 eV Core-core repulsion = 26389.079714 eV Total energy + Delta-G solvation = -4063.866508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.88094 -39.93801 -38.62734 -36.17736 -35.26143 -34.43561 -33.97311 -32.15200 -31.57512 -30.59063 -29.22979 -28.42578 -26.47962 -25.62619 -24.57015 -23.58782 -23.07140 -22.29392 -21.37371 -21.17930 -19.51729 -18.24372 -18.09504 -16.92445 -16.48901 -16.38885 -16.06662 -15.64635 -15.40528 -15.08737 -14.77144 -14.48647 -14.32765 -14.23619 -14.12703 -14.02080 -13.98405 -13.62512 -13.50927 -12.99543 -12.90272 -12.66862 -12.52146 -12.10412 -12.03400 -11.93410 -11.80448 -11.59952 -11.30386 -11.19534 -10.92587 -10.75701 -10.73159 -10.68028 -10.37190 -10.12786 -9.99383 -9.91244 -9.83240 -9.50032 -9.42504 -8.67694 -8.16034 -7.01392 -5.98150 -3.32999 -0.18153 0.34257 2.30461 2.48105 3.08404 3.31404 3.41363 3.48519 3.52683 3.70560 3.82770 3.99121 4.14787 4.22436 4.51499 4.52969 4.63215 4.70986 4.86546 4.87933 4.92730 4.97658 5.09959 5.12473 5.17829 5.25188 5.27385 5.43334 5.47752 5.51857 5.61368 5.64731 5.67082 5.70970 5.75421 5.82448 5.91133 5.91807 5.99213 5.99684 6.09417 6.16542 6.30560 6.52591 6.59917 6.81650 6.91418 7.23084 7.29763 7.65183 7.90374 8.20302 8.29012 8.89446 9.68596 10.07365 11.17696 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002143 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.930319 B =13063.501305 C =14218.867143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C 0.122 3.878 4 N -0.238 5.238 5 N -0.224 5.224 6 C 0.057 3.943 7 C -0.101 4.101 8 C -0.083 4.083 9 C -0.126 4.126 10 C 0.560 3.440 11 O -0.507 6.507 12 N -0.718 5.718 13 C 0.113 3.887 14 C 0.044 3.956 15 N -0.529 5.529 16 C 0.044 3.956 17 C 0.151 3.849 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.085 0.915 21 C 0.023 3.977 22 N -0.907 5.907 23 Si 0.882 3.118 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.271 1.271 27 C 0.130 3.870 28 C 0.033 3.967 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.398 0.602 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.263 0.737 48 H 0.077 0.923 49 H 0.033 0.967 50 H 0.037 0.963 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 14.495 -24.079 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.023 4.023 4 N -0.079 5.079 5 N -0.067 5.067 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.344 3.656 11 O -0.382 6.382 12 N -0.370 5.370 13 C -0.010 4.010 14 C -0.084 4.084 15 N -0.255 5.255 16 C -0.086 4.086 17 C 0.025 3.975 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.103 0.897 21 C -0.176 4.176 22 N -0.550 5.550 23 Si 0.712 3.288 24 H -0.214 1.214 25 H -0.231 1.231 26 H -0.196 1.196 27 C 0.004 3.996 28 C -0.096 4.096 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.784 13.401 -25.515 28.876 hybrid contribution 0.194 0.110 1.218 1.238 sum -1.591 13.511 -24.297 27.846 Atomic orbital electron populations 1.21597 0.93225 1.02708 1.01689 1.20731 0.97393 0.88511 1.04950 1.23189 0.91882 0.98741 0.88457 1.73098 1.07854 1.03158 1.23797 1.72854 1.07463 0.99455 1.26952 1.22885 0.96752 0.99034 0.90007 1.20712 1.02080 0.88789 1.04349 1.22535 0.94551 0.94410 0.99795 1.21115 1.01856 0.95244 0.95830 1.17823 0.79311 0.85479 0.82944 1.90798 1.42315 1.18517 1.86610 1.45842 1.63947 1.20974 1.06253 1.21684 1.02196 0.96731 0.80368 1.22247 0.98871 0.97583 0.89734 1.62009 1.59901 1.02885 1.00657 1.22657 0.97490 0.96289 0.92123 1.20995 0.97526 0.85239 0.93734 1.44422 1.70713 1.03186 1.14916 1.18904 1.21723 0.94688 1.03609 0.89698 1.25266 0.98075 0.96751 0.97550 1.69852 1.34462 1.09809 1.40893 0.86985 0.85735 0.79067 0.77004 1.21440 1.23093 1.19565 1.21444 0.97412 0.95136 0.85601 1.22831 0.98320 0.88419 1.00056 0.91449 0.91996 0.93200 0.90040 0.87205 0.89569 0.89981 0.89605 0.82863 0.76700 0.90220 0.89832 0.90409 0.94546 0.91451 0.94706 0.91556 0.95124 0.92729 0.90532 0.94941 0.94435 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.50 37.16 0.35 -0.93 16 2 C -0.08 -0.77 5.48 -27.88 -0.15 -0.92 16 3 C 0.12 1.30 6.16 -82.00 -0.51 0.79 16 4 N -0.24 -2.79 11.42 33.81 0.39 -2.41 16 5 N -0.22 -2.41 11.41 33.57 0.38 -2.03 16 6 C 0.06 0.43 6.86 -82.46 -0.57 -0.13 16 7 C -0.10 -0.39 10.19 36.00 0.37 -0.02 16 8 C -0.08 -0.55 9.35 -38.78 -0.36 -0.91 16 9 C -0.13 -1.16 5.92 -104.57 -0.62 -1.78 16 10 C 0.56 5.67 7.73 -12.20 -0.09 5.58 16 11 O -0.51 -6.55 11.99 5.35 0.06 -6.49 16 12 N -0.72 -5.87 5.52 -61.16 -0.34 -6.21 16 13 C 0.11 1.18 4.93 -4.04 -0.02 1.16 16 14 C 0.04 0.47 5.38 -3.82 -0.02 0.45 16 15 N -0.53 -7.85 4.78 -234.31 -1.12 -8.97 16 16 C 0.04 0.67 5.58 -3.70 -0.02 0.65 16 17 C 0.15 2.88 6.69 -3.61 -0.02 2.85 16 18 N -0.61 -14.26 2.81 -172.01 -0.48 -14.74 16 19 C -0.26 -7.21 10.06 -15.06 -0.15 -7.36 16 20 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 21 C 0.02 0.65 5.22 -17.43 -0.09 0.56 16 22 N -0.91 -27.63 13.97 55.49 0.78 -26.85 16 23 Si 0.88 22.33 24.34 -169.99 -4.14 18.19 16 24 H -0.29 -6.96 6.50 56.52 0.37 -6.59 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 26 H -0.27 -6.81 6.83 56.52 0.39 -6.42 16 27 C 0.13 2.81 4.37 -3.60 -0.02 2.79 16 28 C 0.03 0.56 5.04 -3.70 -0.02 0.54 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 6.85 -51.93 -0.36 0.31 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.20 5.93 -51.93 -0.31 0.89 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.15 8.09 -51.93 -0.42 -0.27 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.15 0.42 6.65 -52.49 -0.35 0.07 16 38 H 0.40 2.02 6.69 -40.82 -0.27 1.74 16 39 H 0.08 0.96 6.18 -51.93 -0.32 0.64 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.07 0.84 8.11 -51.92 -0.42 0.42 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.08 1.81 4.63 -51.93 -0.24 1.57 16 49 H 0.03 0.72 7.08 -51.92 -0.37 0.35 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 1.11 5.73 -51.93 -0.30 0.81 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -33.92 394.87 -8.48 -42.41 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.02 Total: -2.18 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.94 Total: 3.32 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.40 Total: -61.21 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.06 Total: -6.49 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.92 -8.48 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690074823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.383 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds