Wall clock time and date at job start Wed Apr 1 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 112.90494 * 2 1 4 4 C 1.53872 * 113.68836 * 228.45233 * 2 1 3 5 5 H 1.08993 * 113.64226 * 104.95605 * 4 2 1 6 6 N 1.46508 * 113.63539 * 334.06799 * 4 2 1 7 7 C 1.34781 * 119.99662 * 154.99790 * 6 4 2 8 8 O 1.21278 * 120.00375 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99621 * 179.97438 * 7 6 4 10 10 C 1.52999 * 109.46816 * 180.02562 * 9 7 6 11 11 N 1.46499 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.34430 * 126.82368 * 124.70758 * 11 10 9 13 13 N 1.30830 * 108.08029 * 179.89433 * 12 11 10 14 14 C 1.33244 * 109.82590 * 0.38305 * 13 12 11 15 15 N 1.30707 * 108.94601 * 359.76400 * 14 13 12 16 16 C 1.52251 * 86.55416 * 218.62335 * 4 2 1 17 17 H 1.09000 * 113.67106 * 142.25415 * 16 4 2 18 18 C 1.53065 * 111.69951 * 272.52097 * 16 4 2 19 19 C 1.53025 * 109.40690 * 147.20981 * 18 16 4 20 20 C 1.51670 * 109.36864 * 295.88095 * 19 18 16 21 21 N 1.45891 * 110.60103 * 56.22483 * 20 19 18 22 22 C 1.36932 * 118.48668 * 142.43061 * 21 20 19 23 23 H 1.08001 * 120.00110 * 206.29625 * 22 21 20 24 24 C 1.38813 * 119.99751 * 26.01084 * 22 21 20 25 25 N 1.31616 * 119.99961 * 16.81456 * 24 22 21 26 26 Si 1.86802 * 119.99992 * 196.81091 * 24 22 21 27 27 H 1.48499 * 109.46817 * 90.00663 * 26 24 22 28 28 H 1.48495 * 109.47119 * 210.00279 * 26 24 22 29 29 H 1.48500 * 109.47100 * 330.00393 * 26 24 22 30 30 C 1.45092 * 123.02890 * 322.14850 * 21 20 19 31 31 H 1.09002 * 112.25589 * 156.06794 * 30 21 20 32 32 H 1.08997 * 109.47330 * 288.57965 * 1 2 3 33 33 H 1.09010 * 109.46999 * 48.57891 * 1 2 3 34 34 H 1.08999 * 109.47095 * 168.57476 * 1 2 3 35 35 H 1.08997 * 109.47125 * 157.13324 * 3 2 1 36 36 H 1.08998 * 109.46768 * 277.13145 * 3 2 1 37 37 H 1.09000 * 109.46812 * 37.13018 * 3 2 1 38 38 H 0.96994 * 119.99887 * 335.00396 * 6 4 2 39 39 H 1.09000 * 109.47380 * 300.00623 * 9 7 6 40 40 H 1.09004 * 109.47029 * 60.00617 * 9 7 6 41 41 H 1.09007 * 109.47162 * 299.99945 * 10 9 7 42 42 H 1.08995 * 109.47196 * 60.00099 * 10 9 7 43 43 H 1.08007 * 125.96295 * 0.04243 * 12 11 10 44 44 H 1.08002 * 125.52474 * 179.79804 * 14 13 12 45 45 H 1.09002 * 109.47998 * 267.18692 * 18 16 4 46 46 H 1.08996 * 109.48436 * 27.22780 * 18 16 4 47 47 H 1.08999 * 109.56015 * 55.18739 * 19 18 16 48 48 H 1.08992 * 109.56321 * 175.41043 * 19 18 16 49 49 H 1.09005 * 107.60900 * 296.77825 * 20 19 18 50 50 H 1.08999 * 110.46086 * 177.48943 * 20 19 18 51 51 H 0.97009 * 120.00217 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1482 -0.9346 -1.0546 5 1 2.5598 -0.4094 -1.9164 6 7 1.2788 -2.0522 -1.4308 7 6 1.4201 -2.6399 -2.6355 8 8 2.2671 -2.2438 -3.4078 9 6 0.5262 -3.7899 -3.0222 10 6 0.8926 -4.2702 -4.4278 11 7 0.0233 -5.3878 -4.8041 12 6 -0.7525 -5.4719 -5.8987 13 7 -1.3696 -6.6252 -5.8712 14 6 -1.0212 -7.2983 -4.7753 15 7 -0.1699 -6.5815 -4.0898 16 6 3.1987 -1.2725 -0.0057 17 1 3.5019 -2.3195 -0.0114 18 6 4.3736 -0.2922 -0.0450 19 6 4.9279 -0.1060 1.3691 20 6 3.8695 0.5388 2.2434 21 7 2.6452 -0.2547 2.2370 22 6 1.9312 -0.3634 3.4004 23 1 1.3044 -1.2262 3.5708 24 6 2.0177 0.6327 4.3634 25 7 2.5019 1.8147 4.0459 26 14 1.4469 0.2956 6.1098 27 1 2.5827 -0.2305 6.9088 28 1 0.9533 1.5556 6.7211 29 1 0.3511 -0.7064 6.0876 30 6 2.1462 -0.9293 1.0533 31 1 1.5031 -1.7741 1.2999 32 1 -0.3634 0.3274 0.9741 33 1 -0.3633 0.6800 -0.7707 34 1 -0.3633 -1.0073 -0.2036 35 1 3.1391 1.3755 0.3993 36 1 2.1493 1.7937 -1.0197 37 1 1.5121 2.0629 0.6203 38 1 0.6016 -2.3691 -0.8129 39 1 0.6584 -4.6072 -2.3133 40 1 -0.5134 -3.4623 -3.0093 41 1 0.7606 -3.4529 -5.1370 42 1 1.9321 -4.5978 -4.4404 43 1 -0.8479 -4.7198 -6.6679 44 1 -1.3830 -8.2775 -4.4987 45 1 5.1557 -0.6880 -0.6928 46 1 4.0328 0.6683 -0.4313 47 1 5.1897 -1.0770 1.7893 48 1 5.8144 0.5271 1.3332 49 1 3.6620 1.5279 1.8349 50 1 4.2303 0.6394 3.2670 51 1 2.5620 2.5109 4.7187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692135853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:08 Heat of formation + Delta-G solvation = 118.834530 kcal Electronic energy + Delta-G solvation = -31611.723327 eV Core-core repulsion = 27550.322350 eV Total energy + Delta-G solvation = -4061.400977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.35038 -41.13226 -39.27608 -35.56356 -35.04889 -33.37080 -32.68779 -31.51966 -30.91635 -30.36111 -29.89447 -26.91343 -25.90810 -25.33854 -24.16734 -22.51660 -22.29819 -21.93155 -21.09739 -20.37182 -19.35404 -18.04364 -17.61446 -16.95173 -16.60309 -16.26669 -15.99197 -15.47461 -15.12507 -14.81288 -14.55049 -14.43831 -14.21169 -13.87074 -13.71225 -13.56968 -13.15003 -12.90839 -12.67681 -12.56383 -12.39277 -12.15385 -12.14072 -11.68096 -11.63937 -11.41228 -11.21592 -11.05428 -10.89133 -10.80106 -10.55018 -10.37700 -10.23614 -10.18774 -10.08554 -10.04570 -9.94341 -9.70914 -9.57214 -9.38622 -9.12954 -8.70128 -8.37790 -6.68493 -5.81737 -3.25410 1.31205 1.92789 2.50268 2.66591 3.13435 3.33792 3.41624 3.41935 4.01230 4.09885 4.34591 4.45322 4.50607 4.71277 4.83349 4.91547 4.97527 5.07101 5.26823 5.30604 5.31724 5.40177 5.42438 5.56780 5.66753 5.78227 5.89576 5.90439 5.96614 6.07864 6.11191 6.14352 6.20777 6.25953 6.39110 6.41415 6.44773 6.51762 6.53906 6.57477 6.72190 6.76430 6.79498 6.93060 7.07527 7.16308 7.38785 7.51049 7.70361 7.76132 7.79827 8.14062 8.41515 9.20834 9.86391 10.30045 11.23928 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.002382 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.090417 B =11750.098011 C =12513.693573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.136 4.136 4 C 0.121 3.879 5 H 0.095 0.905 6 N -0.700 5.700 7 C 0.519 3.481 8 O -0.546 6.546 9 C -0.154 4.154 10 C 0.146 3.854 11 N -0.378 5.378 12 C 0.255 3.745 13 N -0.550 5.550 14 C 0.196 3.804 15 N -0.318 5.318 16 C -0.128 4.128 17 H 0.067 0.933 18 C -0.109 4.109 19 C -0.143 4.143 20 C 0.177 3.823 21 N -0.568 5.568 22 C -0.263 4.263 23 H 0.064 0.936 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.187 3.813 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.402 0.598 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.219 0.781 44 H 0.217 0.783 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -9.012 -16.056 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.117 4.117 3 C -0.193 4.193 4 C 0.016 3.984 5 H 0.113 0.887 6 N -0.350 5.350 7 C 0.305 3.695 8 O -0.425 6.425 9 C -0.195 4.195 10 C 0.024 3.976 11 N -0.169 5.169 12 C -0.042 4.042 13 N -0.277 5.277 14 C -0.107 4.107 15 N -0.146 5.146 16 C -0.149 4.149 17 H 0.085 0.915 18 C -0.146 4.146 19 C -0.182 4.182 20 C 0.052 3.948 21 N -0.285 5.285 22 C -0.392 4.392 23 H 0.082 0.918 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.077 3.923 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.238 0.762 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.235 0.765 44 H 0.233 0.767 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.888 -8.847 -16.017 18.525 hybrid contribution -0.731 -0.102 1.178 1.391 sum -3.620 -8.949 -14.839 17.703 Atomic orbital electron populations 1.21588 0.95341 0.99590 1.01811 1.23058 0.95000 0.96666 0.97001 1.22066 1.04080 0.93824 0.99292 1.21941 0.91981 0.87489 0.96993 0.88677 1.45758 1.37636 1.34662 1.16939 1.20203 0.84092 0.83321 0.81909 1.90715 1.35937 1.64679 1.51127 1.21876 1.01104 0.98516 0.97995 1.21561 0.93948 0.85241 0.96814 1.50647 1.34241 1.14544 1.17503 1.26123 0.89600 0.96852 0.91587 1.70558 1.28328 1.05485 1.23370 1.26035 0.94388 1.00809 0.89428 1.78055 1.22060 0.94174 1.20298 1.22870 0.95766 0.99082 0.97222 0.91496 1.21607 0.95891 0.99452 0.97676 1.21828 0.99375 1.01117 0.95887 1.20380 0.83682 0.92525 0.98208 1.43212 1.22761 1.57194 1.05353 1.19198 1.24162 1.02091 0.93779 0.91798 1.24969 1.00324 0.94677 0.99088 1.70068 1.49747 1.01915 1.32552 0.86352 0.78364 0.77069 0.85314 1.21512 1.21837 1.20558 1.21262 0.92270 0.93382 0.85420 0.91253 0.91639 0.93958 0.94129 0.88456 0.94871 0.92007 0.76165 0.87324 0.88290 0.87047 0.88190 0.76453 0.76712 0.93446 0.90010 0.93016 0.92702 0.94722 0.91123 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.97 37.16 0.33 -1.61 16 2 C -0.11 -1.89 1.34 -153.93 -0.21 -2.09 16 3 C -0.14 -2.45 7.27 37.16 0.27 -2.18 16 4 C 0.12 1.82 3.31 -67.86 -0.22 1.60 16 5 H 0.10 1.54 7.30 -51.93 -0.38 1.16 16 6 N -0.70 -8.61 4.70 -53.74 -0.25 -8.86 16 7 C 0.52 6.09 7.83 -10.98 -0.09 6.00 16 8 O -0.55 -8.14 15.58 5.56 0.09 -8.05 16 9 C -0.15 -1.28 5.91 -27.88 -0.16 -1.45 16 10 C 0.15 1.14 5.84 -4.04 -0.02 1.11 16 11 N -0.38 -3.32 3.69 -62.63 -0.23 -3.56 16 12 C 0.26 1.97 12.63 -90.66 -1.14 0.83 16 13 N -0.55 -5.45 11.19 -15.83 -0.18 -5.63 16 14 C 0.20 1.83 13.03 -91.82 -1.20 0.64 16 15 N -0.32 -3.37 12.57 29.29 0.37 -3.00 16 16 C -0.13 -2.13 4.04 -90.94 -0.37 -2.50 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.11 -1.80 5.13 -26.69 -0.14 -1.93 16 19 C -0.14 -2.61 5.96 -27.39 -0.16 -2.77 16 20 C 0.18 3.93 4.01 -5.04 -0.02 3.91 16 21 N -0.57 -12.89 2.69 -167.63 -0.45 -13.34 16 22 C -0.26 -6.70 9.47 -15.06 -0.14 -6.84 16 23 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 24 C 0.01 0.22 4.84 -17.43 -0.08 0.14 16 25 N -0.90 -24.47 11.07 55.49 0.61 -23.86 16 26 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 C 0.19 3.52 3.44 -68.39 -0.24 3.29 16 31 H 0.07 1.30 7.87 -51.93 -0.41 0.89 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.04 0.52 5.91 -51.93 -0.31 0.22 16 35 H 0.10 1.85 1.86 -51.93 -0.10 1.75 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.25 8.05 -51.93 -0.42 0.84 16 38 H 0.40 4.34 6.81 -40.82 -0.28 4.07 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.22 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.35 4.54 -51.93 -0.24 1.12 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.04 0.82 5.61 -51.93 -0.29 0.53 16 50 H 0.07 1.79 6.53 -51.93 -0.34 1.45 16 51 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -31.37 391.59 -10.55 -41.92 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.79 Total: 6.45 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.59 Total: -3.87 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.13 Total: -58.24 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.37 -10.55 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692135853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.754 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds