Wall clock time and date at job start Wed Apr 1 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 112.90494 * 2 1 4 4 C 1.53872 * 113.68836 * 228.45233 * 2 1 3 5 5 H 1.08993 * 113.64226 * 104.95605 * 4 2 1 6 6 N 1.46508 * 113.63539 * 334.06799 * 4 2 1 7 7 C 1.34781 * 119.99662 * 154.99790 * 6 4 2 8 8 O 1.21278 * 120.00375 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99621 * 179.97438 * 7 6 4 10 10 C 1.52999 * 109.46816 * 180.02562 * 9 7 6 11 11 N 1.46499 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.34430 * 126.82368 * 124.70758 * 11 10 9 13 13 N 1.30830 * 108.08029 * 179.89433 * 12 11 10 14 14 C 1.33244 * 109.82590 * 0.38305 * 13 12 11 15 15 N 1.30707 * 108.94601 * 359.76400 * 14 13 12 16 16 C 1.52251 * 86.55416 * 218.62335 * 4 2 1 17 17 H 1.09000 * 113.67106 * 142.25415 * 16 4 2 18 18 C 1.53065 * 111.69951 * 272.52097 * 16 4 2 19 19 C 1.53025 * 109.40690 * 147.20981 * 18 16 4 20 20 C 1.51670 * 109.36864 * 295.88095 * 19 18 16 21 21 N 1.45891 * 110.60103 * 56.22483 * 20 19 18 22 22 C 1.36932 * 118.48668 * 142.43061 * 21 20 19 23 23 H 1.08001 * 120.00110 * 206.29625 * 22 21 20 24 24 C 1.38813 * 119.99751 * 26.01084 * 22 21 20 25 25 N 1.31616 * 119.99961 * 16.81456 * 24 22 21 26 26 Si 1.86802 * 119.99992 * 196.81091 * 24 22 21 27 27 H 1.48499 * 109.46817 * 90.00663 * 26 24 22 28 28 H 1.48495 * 109.47119 * 210.00279 * 26 24 22 29 29 H 1.48500 * 109.47100 * 330.00393 * 26 24 22 30 30 C 1.45092 * 123.02890 * 322.14850 * 21 20 19 31 31 H 1.09002 * 112.25589 * 156.06794 * 30 21 20 32 32 H 1.08997 * 109.47330 * 288.57965 * 1 2 3 33 33 H 1.09010 * 109.46999 * 48.57891 * 1 2 3 34 34 H 1.08999 * 109.47095 * 168.57476 * 1 2 3 35 35 H 1.08997 * 109.47125 * 157.13324 * 3 2 1 36 36 H 1.08998 * 109.46768 * 277.13145 * 3 2 1 37 37 H 1.09000 * 109.46812 * 37.13018 * 3 2 1 38 38 H 0.96994 * 119.99887 * 335.00396 * 6 4 2 39 39 H 1.09000 * 109.47380 * 300.00623 * 9 7 6 40 40 H 1.09004 * 109.47029 * 60.00617 * 9 7 6 41 41 H 1.09007 * 109.47162 * 299.99945 * 10 9 7 42 42 H 1.08995 * 109.47196 * 60.00099 * 10 9 7 43 43 H 1.08007 * 125.96295 * 0.04243 * 12 11 10 44 44 H 1.08002 * 125.52474 * 179.79804 * 14 13 12 45 45 H 1.09002 * 109.47998 * 267.18692 * 18 16 4 46 46 H 1.08996 * 109.48436 * 27.22780 * 18 16 4 47 47 H 1.08999 * 109.56015 * 55.18739 * 19 18 16 48 48 H 1.08992 * 109.56321 * 175.41043 * 19 18 16 49 49 H 1.09005 * 107.60900 * 296.77825 * 20 19 18 50 50 H 1.08999 * 110.46086 * 177.48943 * 20 19 18 51 51 H 0.97009 * 120.00217 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1482 -0.9346 -1.0546 5 1 2.5598 -0.4094 -1.9164 6 7 1.2788 -2.0522 -1.4308 7 6 1.4201 -2.6399 -2.6355 8 8 2.2671 -2.2438 -3.4078 9 6 0.5262 -3.7899 -3.0222 10 6 0.8926 -4.2702 -4.4278 11 7 0.0233 -5.3878 -4.8041 12 6 -0.7525 -5.4719 -5.8987 13 7 -1.3696 -6.6252 -5.8712 14 6 -1.0212 -7.2983 -4.7753 15 7 -0.1699 -6.5815 -4.0898 16 6 3.1987 -1.2725 -0.0057 17 1 3.5019 -2.3195 -0.0114 18 6 4.3736 -0.2922 -0.0450 19 6 4.9279 -0.1060 1.3691 20 6 3.8695 0.5388 2.2434 21 7 2.6452 -0.2547 2.2370 22 6 1.9312 -0.3634 3.4004 23 1 1.3044 -1.2262 3.5708 24 6 2.0177 0.6327 4.3634 25 7 2.5019 1.8147 4.0459 26 14 1.4469 0.2956 6.1098 27 1 2.5827 -0.2305 6.9088 28 1 0.9533 1.5556 6.7211 29 1 0.3511 -0.7064 6.0876 30 6 2.1462 -0.9293 1.0533 31 1 1.5031 -1.7741 1.2999 32 1 -0.3634 0.3274 0.9741 33 1 -0.3633 0.6800 -0.7707 34 1 -0.3633 -1.0073 -0.2036 35 1 3.1391 1.3755 0.3993 36 1 2.1493 1.7937 -1.0197 37 1 1.5121 2.0629 0.6203 38 1 0.6016 -2.3691 -0.8129 39 1 0.6584 -4.6072 -2.3133 40 1 -0.5134 -3.4623 -3.0093 41 1 0.7606 -3.4529 -5.1370 42 1 1.9321 -4.5978 -4.4404 43 1 -0.8479 -4.7198 -6.6679 44 1 -1.3830 -8.2775 -4.4987 45 1 5.1557 -0.6880 -0.6928 46 1 4.0328 0.6683 -0.4313 47 1 5.1897 -1.0770 1.7893 48 1 5.8144 0.5271 1.3332 49 1 3.6620 1.5279 1.8349 50 1 4.2303 0.6394 3.2670 51 1 2.5620 2.5109 4.7187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692135853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:07 Heat of formation + Delta-G solvation = 102.033842 kcal Electronic energy + Delta-G solvation = -31612.451859 eV Core-core repulsion = 27550.322350 eV Total energy + Delta-G solvation = -4062.129509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.97185 -42.47268 -40.33997 -37.05202 -35.78030 -34.87229 -34.01326 -32.31844 -32.15975 -31.67249 -31.16503 -28.29333 -27.22504 -26.78128 -25.33497 -24.09854 -22.91251 -22.85061 -22.34746 -21.30565 -20.79209 -19.14188 -18.74988 -18.60199 -17.48722 -17.25594 -16.99203 -16.59218 -16.36379 -15.99166 -15.78427 -15.60238 -15.39494 -15.00722 -14.90901 -14.65488 -14.47107 -14.13631 -14.01049 -13.72683 -13.57879 -13.49905 -13.19040 -13.04541 -12.93180 -12.83447 -12.74712 -12.55379 -12.43165 -12.25718 -12.07243 -11.97696 -11.58492 -11.42515 -11.12627 -11.09154 -10.94857 -10.92219 -10.77013 -10.65346 -10.59209 -10.31314 -9.86722 -8.54115 -7.79363 -5.24180 0.70962 1.32732 1.45812 1.48830 1.55176 1.57330 2.03669 2.18821 2.53517 3.32093 3.49052 3.55847 3.56291 3.63080 3.72968 3.76717 3.88640 3.97354 4.04588 4.14188 4.22730 4.28969 4.37393 4.42712 4.48925 4.61549 4.69408 4.71541 4.77344 4.80006 4.82554 4.91888 4.96909 5.02179 5.11216 5.13989 5.17505 5.29890 5.30956 5.32378 5.41472 5.49688 5.51992 5.57398 5.65165 5.71546 5.76852 5.90764 5.98915 6.44396 6.52826 7.14409 7.19451 7.25039 8.03024 8.38954 9.23018 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.002382 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.090417 B =11750.098011 C =12513.693573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.145 3.855 5 H 0.093 0.907 6 N -0.698 5.698 7 C 0.525 3.475 8 O -0.575 6.575 9 C -0.140 4.140 10 C 0.148 3.852 11 N -0.383 5.383 12 C 0.262 3.738 13 N -0.579 5.579 14 C 0.192 3.808 15 N -0.352 5.352 16 C -0.123 4.123 17 H 0.070 0.930 18 C -0.105 4.105 19 C -0.134 4.134 20 C 0.187 3.813 21 N -0.580 5.580 22 C -0.263 4.263 23 H 0.062 0.938 24 C -0.041 4.041 25 N -0.926 5.926 26 Si 0.954 3.046 27 H -0.291 1.291 28 H -0.299 1.299 29 H -0.271 1.271 30 C 0.171 3.829 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.411 0.589 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.258 0.742 44 H 0.238 0.762 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.016 0.984 50 H 0.031 0.969 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -10.333 -18.310 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.188 4.188 4 C 0.038 3.962 5 H 0.111 0.889 6 N -0.348 5.348 7 C 0.312 3.688 8 O -0.455 6.455 9 C -0.181 4.181 10 C 0.027 3.973 11 N -0.173 5.173 12 C -0.034 4.034 13 N -0.307 5.307 14 C -0.111 4.111 15 N -0.180 5.180 16 C -0.145 4.145 17 H 0.088 0.912 18 C -0.142 4.142 19 C -0.172 4.172 20 C 0.062 3.938 21 N -0.299 5.299 22 C -0.394 4.394 23 H 0.080 0.920 24 C -0.237 4.237 25 N -0.571 5.571 26 Si 0.784 3.216 27 H -0.218 1.218 28 H -0.225 1.225 29 H -0.196 1.196 30 C 0.062 3.938 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.107 0.893 43 H 0.274 0.726 44 H 0.254 0.746 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.034 0.966 50 H 0.050 0.950 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.621 -10.207 -18.291 21.257 hybrid contribution -0.513 0.278 1.827 1.918 sum -4.134 -9.929 -16.464 19.665 Atomic orbital electron populations 1.21535 0.94256 1.01523 1.00538 1.22892 0.95869 0.95852 0.96797 1.21983 1.02791 0.94209 0.99847 1.21527 0.91163 0.87593 0.95870 0.88889 1.45697 1.37492 1.34074 1.17584 1.20668 0.83771 0.83395 0.80975 1.90710 1.37250 1.65638 1.51857 1.21774 1.01153 0.96840 0.98321 1.21594 0.93254 0.85484 0.97000 1.50668 1.34616 1.14280 1.17780 1.26925 0.88023 0.96859 0.91579 1.70586 1.29558 1.06639 1.23957 1.26555 0.93818 1.01557 0.89130 1.78000 1.23114 0.95252 1.21618 1.22824 0.95759 0.99241 0.96631 0.91200 1.21579 0.96414 0.99684 0.96559 1.21698 0.98662 1.00668 0.96211 1.20123 0.84702 0.92371 0.96636 1.43355 1.22982 1.57489 1.06070 1.19459 1.23452 1.01527 0.94956 0.91988 1.25574 1.01443 0.94728 1.02002 1.70207 1.51501 1.02495 1.32930 0.85473 0.77911 0.76553 0.81713 1.21803 1.22545 1.19634 1.21527 0.93752 0.93625 0.84892 0.91233 0.94646 0.92703 0.91398 0.89511 0.92560 0.95262 0.75134 0.87389 0.86420 0.84911 0.89289 0.72593 0.74589 0.91272 0.89894 0.93454 0.90945 0.96595 0.95037 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.97 71.98 0.65 -2.92 16 2 C -0.11 -3.56 1.34 -51.81 -0.07 -3.63 16 3 C -0.13 -4.71 7.27 71.98 0.52 -4.18 16 4 C 0.14 4.01 3.31 45.03 0.15 4.16 16 5 H 0.09 2.74 7.30 -2.39 -0.02 2.72 16 6 N -0.70 -15.13 4.70 -442.33 -2.08 -17.21 16 7 C 0.52 10.72 7.83 87.66 0.69 11.41 16 8 O -0.57 -15.50 15.58 -3.02 -0.05 -15.55 16 9 C -0.14 -1.91 5.91 29.85 0.18 -1.73 16 10 C 0.15 1.89 5.84 86.38 0.50 2.39 16 11 N -0.38 -5.79 3.69 -352.06 -1.30 -7.09 16 12 C 0.26 3.32 12.63 180.36 2.28 5.59 16 13 N -0.58 -10.35 11.19 -204.00 -2.28 -12.63 16 14 C 0.19 3.30 13.03 180.77 2.36 5.65 16 15 N -0.35 -6.87 12.57 -61.25 -0.77 -7.64 16 16 C -0.12 -3.88 4.04 -11.00 -0.04 -3.93 16 17 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 18 C -0.10 -3.28 5.13 30.62 0.16 -3.12 16 19 C -0.13 -4.80 5.96 30.17 0.18 -4.62 16 20 C 0.19 8.53 4.01 86.06 0.34 8.87 16 21 N -0.58 -26.80 2.69 -684.26 -1.84 -28.64 16 22 C -0.26 -13.71 9.47 84.03 0.80 -12.91 16 23 H 0.06 3.19 7.85 -2.91 -0.02 3.16 16 24 C -0.04 -2.23 4.84 84.86 0.41 -1.82 16 25 N -0.93 -52.41 11.07 21.65 0.24 -52.17 16 26 Si 0.95 44.00 29.59 68.60 2.03 46.03 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 C 0.17 6.32 3.44 45.45 0.16 6.47 16 31 H 0.07 2.54 7.87 -2.39 -0.02 2.53 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.58 5.91 -2.39 -0.01 1.57 16 35 H 0.09 3.31 1.86 -2.39 0.00 3.31 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 38 H 0.41 7.61 6.81 -92.71 -0.63 6.97 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.13 1.12 8.04 -2.38 -0.02 1.10 16 42 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 43 H 0.26 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.24 2.46 8.06 -2.91 -0.02 2.43 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.08 2.61 4.54 -2.39 -0.01 2.60 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.02 0.80 5.61 -2.38 -0.01 0.79 16 50 H 0.03 1.66 6.53 -2.39 -0.02 1.64 16 51 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 Total: -1.00 -69.85 391.59 3.52 -66.32 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.32 Total: 22.88 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 9.25 Total: 5.69 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -8.03 Total: -125.38 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.05 Total: -15.55 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.85 3.52 -66.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692135853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.358 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds