Wall clock time and date at job start Wed Apr 1 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.29102 * 126.00461 * 2 1 4 4 N 1.29020 * 110.25910 * 180.02562 * 3 2 1 5 5 C 1.32906 * 108.63355 * 0.02562 * 4 3 2 6 6 C 1.34392 * 126.00855 * 179.97438 * 2 1 3 7 7 C 1.50534 * 129.25901 * 359.88593 * 6 2 1 8 8 C 1.53439 * 108.32785 * 196.42736 * 7 6 2 9 9 H 1.08997 * 109.45537 * 70.28671 * 8 7 6 10 10 C 1.50699 * 109.45478 * 190.25666 * 8 7 6 11 11 O 1.21280 * 120.00258 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99746 * 180.02562 * 10 8 7 13 13 C 1.48119 * 127.03423 * 0.03276 * 12 10 8 14 14 C 1.55111 * 103.31528 * 140.73291 * 13 12 10 15 15 C 1.54623 * 102.75764 * 37.26533 * 14 13 12 16 16 C 1.53000 * 110.32398 * 97.20571 * 15 14 13 17 17 C 1.52997 * 110.32816 * 219.31813 * 15 14 13 18 18 N 1.46505 * 109.47212 * 297.16577 * 17 15 14 19 19 C 1.36936 * 119.99992 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99834 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00093 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00176 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00265 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46968 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47299 * 119.99957 * 23 21 19 26 26 H 1.48495 * 109.47075 * 240.00117 * 23 21 19 27 27 C 1.47486 * 127.03677 * 180.02562 * 12 10 8 28 28 C 1.53107 * 109.54665 * 310.27644 * 8 7 6 29 29 C 1.50599 * 129.16057 * 179.77481 * 5 4 3 30 30 H 1.08995 * 109.46858 * 270.04008 * 1 2 3 31 31 H 1.08993 * 109.47556 * 30.04282 * 1 2 3 32 32 H 1.09007 * 109.46614 * 150.04176 * 1 2 3 33 33 H 1.09001 * 109.69707 * 76.71429 * 7 6 2 34 34 H 1.09004 * 109.72589 * 316.15319 * 7 6 2 35 35 H 1.09001 * 110.66823 * 259.12263 * 13 12 10 36 36 H 1.09005 * 110.65695 * 22.07346 * 13 12 10 37 37 H 1.09003 * 110.72776 * 278.98538 * 14 13 12 38 38 H 1.08997 * 110.83166 * 155.60378 * 14 13 12 39 39 H 1.09002 * 109.47079 * 182.83284 * 16 15 14 40 40 H 1.09003 * 109.47498 * 302.83679 * 16 15 14 41 41 H 1.09003 * 109.47219 * 62.83590 * 16 15 14 42 42 H 1.09002 * 109.47153 * 177.16569 * 17 15 14 43 43 H 1.09001 * 109.46832 * 57.16760 * 17 15 14 44 44 H 0.96996 * 119.99606 * 0.02562 * 18 17 15 45 45 H 0.97001 * 120.00803 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.91252 * 86.11579 * 27 12 10 47 47 H 1.09004 * 109.90948 * 324.83822 * 27 12 10 48 48 H 1.08997 * 109.44996 * 190.09650 * 28 8 7 49 49 H 1.08995 * 109.45647 * 310.03151 * 28 8 7 50 50 H 1.09008 * 109.69293 * 316.32730 * 29 5 4 51 51 H 1.08995 * 109.69126 * 76.86279 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6943 -0.0005 5 6 3.5327 -0.6331 -0.0015 6 6 2.2551 -1.0871 0.0005 7 6 1.8723 -2.5430 0.0035 8 6 3.1015 -3.3642 0.4147 9 1 3.3140 -3.1957 1.4704 10 6 2.8267 -4.8281 0.1853 11 8 1.7561 -5.1814 -0.2617 12 7 3.7705 -5.7448 0.4777 13 6 5.1218 -5.4896 1.0279 14 6 5.3213 -6.6500 2.0377 15 6 4.6426 -7.8428 1.3256 16 6 5.6868 -8.6900 0.5956 17 6 3.8767 -8.6992 2.3360 18 7 4.8160 -9.2666 3.3066 19 6 4.3564 -10.0729 4.3134 20 1 3.3015 -10.2910 4.3917 21 6 5.2462 -10.6100 5.2334 22 7 6.5317 -10.3439 5.1384 23 14 4.6194 -11.7107 6.6064 24 1 3.1457 -11.8535 6.4925 25 1 5.2557 -13.0481 6.4983 26 1 4.9586 -11.1058 7.9195 27 6 3.6690 -7.2072 0.3155 28 6 4.3086 -2.9344 -0.4233 29 6 4.7469 -1.5241 -0.0070 30 1 -0.3633 0.0007 1.0276 31 1 -0.3634 0.8895 -0.5144 32 1 -0.3633 -0.8904 -0.5132 33 1 1.5492 -2.8399 -0.9943 34 1 1.0642 -2.7095 0.7158 35 1 5.8730 -5.5343 0.2394 36 1 5.1549 -4.5250 1.5346 37 1 4.8229 -6.4298 2.9818 38 1 6.3814 -6.8476 2.1966 39 1 5.1887 -9.4968 0.0578 40 1 6.2325 -8.0648 -0.1111 41 1 6.3832 -9.1121 1.3202 42 1 3.3631 -9.5060 1.8130 43 1 3.1458 -8.0804 2.8565 44 1 5.7633 -9.0703 3.2365 45 1 7.1536 -10.7189 5.7814 46 1 3.9504 -7.4885 -0.6992 47 1 2.6505 -7.5341 0.5254 48 1 5.1300 -3.6323 -0.2612 49 1 4.0361 -2.9337 -1.4787 50 1 5.4792 -1.1426 -0.7186 51 1 5.1851 -1.5538 0.9905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699849499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:49 Heat of formation + Delta-G solvation = 47.153301 kcal Electronic energy + Delta-G solvation = -31111.787162 eV Core-core repulsion = 27047.277854 eV Total energy + Delta-G solvation = -4064.509308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.44232 -41.48147 -39.54787 -37.59168 -36.46687 -35.87976 -34.35767 -32.24269 -31.54784 -31.35458 -30.45725 -28.75252 -27.84378 -27.37567 -25.45296 -24.71490 -24.06253 -23.61079 -22.39360 -21.05893 -20.22795 -19.84206 -19.13813 -18.32953 -17.97069 -17.61800 -16.95226 -16.64193 -16.43501 -15.79558 -15.53551 -15.46257 -15.05234 -14.93821 -14.83782 -14.80699 -14.64400 -14.23951 -14.10330 -13.95171 -13.69262 -13.56184 -13.28693 -13.12939 -13.03476 -12.99425 -12.86531 -12.74398 -12.58693 -12.55682 -12.15383 -12.11177 -12.03627 -11.93151 -11.59597 -11.55643 -11.44399 -11.29524 -10.95593 -10.93018 -10.79096 -9.88291 -9.68166 -8.95931 -7.93993 -5.20815 0.52413 1.41731 1.47371 1.47499 1.48237 1.57617 1.59829 1.95679 2.56513 3.10273 3.31032 3.39512 3.52611 3.69338 3.72611 3.75168 3.77384 3.87985 3.90803 4.10026 4.21248 4.24673 4.28280 4.35029 4.38953 4.43743 4.47575 4.50352 4.55900 4.66184 4.70353 4.76923 4.84656 4.87338 4.89994 4.95047 4.97648 5.04037 5.05935 5.09748 5.16149 5.21304 5.27624 5.31781 5.33826 5.45146 5.51608 5.58295 5.60536 6.29319 6.57768 7.11744 7.36978 7.44267 8.12353 8.38796 9.29228 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002119 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.360574 B =13209.624768 C =13414.583207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.129 5.129 4 N -0.299 5.299 5 C -0.031 4.031 6 C -0.015 4.015 7 C -0.017 4.017 8 C -0.091 4.091 9 H 0.117 0.883 10 C 0.538 3.462 11 O -0.583 6.583 12 N -0.614 5.614 13 C 0.102 3.898 14 C -0.119 4.119 15 C -0.072 4.072 16 C -0.126 4.126 17 C 0.166 3.834 18 N -0.734 5.734 19 C -0.243 4.243 20 H 0.067 0.933 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.967 3.033 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.123 3.877 28 C -0.108 4.108 29 C -0.027 4.027 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.013 0.987 43 H 0.007 0.993 44 H 0.380 0.620 45 H 0.251 0.749 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.107 0.893 49 H 0.073 0.927 50 H 0.098 0.902 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 19.099 -14.768 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.107 5.107 4 N -0.162 5.162 5 C -0.173 4.173 6 C -0.151 4.151 7 C -0.057 4.057 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.328 3.672 11 O -0.463 6.463 12 N -0.346 5.346 13 C -0.020 4.020 14 C -0.157 4.157 15 C -0.073 4.073 16 C -0.183 4.183 17 C 0.039 3.961 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.085 0.915 21 C -0.263 4.263 22 N -0.614 5.614 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.001 4.001 28 C -0.146 4.146 29 C -0.066 4.066 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.214 0.786 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.116 0.884 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.188 20.514 -14.944 26.379 hybrid contribution -0.420 -1.867 1.151 2.233 sum -7.608 18.648 -13.794 24.411 Atomic orbital electron populations 1.22733 0.70216 1.07647 1.06770 1.47199 1.10652 1.03945 1.45230 1.78503 0.96451 1.12449 1.23284 1.74745 1.10274 1.13457 1.17729 1.22270 0.96524 0.90959 1.07502 1.21989 0.91154 0.92632 1.09279 1.19866 0.97793 0.83729 1.04308 1.21248 0.97201 0.88872 1.03905 0.86500 1.20468 0.82169 0.87933 0.76614 1.90691 1.25717 1.82370 1.47536 1.48829 1.16006 1.06543 1.63251 1.22957 0.82783 0.99501 0.96743 1.22751 1.01520 0.93699 0.97778 1.21515 0.95697 0.95525 0.94564 1.21749 0.97683 0.99234 0.99680 1.20803 0.91775 0.93874 0.89618 1.42465 1.06520 1.57755 1.31067 1.19588 0.92841 1.20776 1.04332 0.91454 1.25435 0.95712 1.03102 1.02015 1.69782 1.01943 1.50445 1.39271 0.85169 0.77670 0.78255 0.79235 1.19619 1.22002 1.21998 1.21996 0.99223 0.79875 0.98984 1.21767 0.96683 0.96434 0.99732 1.20060 0.91637 0.90507 1.04427 0.87311 0.86718 0.86235 0.88706 0.88901 0.87578 0.87396 0.92684 0.89493 0.92910 0.89924 0.93731 0.96901 0.97533 0.78632 0.93968 0.89668 0.92520 0.87489 0.90816 0.88354 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.27 127.77 1.44 1.92 16 2 N -0.28 -4.91 3.73 -356.41 -1.33 -6.24 16 3 N -0.13 -3.16 13.19 37.02 0.49 -2.67 16 4 N -0.30 -7.71 12.40 -48.99 -0.61 -8.32 16 5 C -0.03 -0.62 7.11 41.75 0.30 -0.32 16 6 C -0.02 -0.27 6.76 41.50 0.28 0.01 16 7 C -0.02 -0.26 4.68 29.94 0.14 -0.12 16 8 C -0.09 -1.31 1.81 -11.36 -0.02 -1.33 16 9 H 0.12 1.49 7.88 -2.39 -0.02 1.47 16 10 C 0.54 11.54 7.25 87.66 0.64 12.18 16 11 O -0.58 -16.96 16.16 -3.03 -0.05 -17.01 16 12 N -0.61 -12.58 3.28 -809.01 -2.65 -15.23 16 13 C 0.10 1.55 5.18 86.79 0.45 2.00 16 14 C -0.12 -2.89 5.67 31.87 0.18 -2.71 16 15 C -0.07 -1.99 0.67 -51.29 -0.03 -2.02 16 16 C -0.13 -3.29 8.04 71.98 0.58 -2.71 16 17 C 0.17 6.42 4.83 86.38 0.42 6.83 16 18 N -0.73 -35.47 5.12 -343.45 -1.76 -37.23 16 19 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 20 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 22 N -0.96 -56.93 13.06 21.65 0.28 -56.64 16 23 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 C 0.12 2.98 6.29 86.54 0.54 3.53 16 28 C -0.11 -1.16 4.91 30.78 0.15 -1.01 16 29 C -0.03 -0.34 6.30 29.96 0.19 -0.15 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.12 0.43 7.96 -2.38 -0.02 0.41 16 33 H 0.09 1.48 7.78 -2.39 -0.02 1.46 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.09 7.87 -2.39 -0.02 1.07 16 36 H 0.11 1.14 6.65 -2.38 -0.02 1.12 16 37 H 0.05 1.63 7.86 -2.39 -0.02 1.61 16 38 H 0.09 2.11 7.85 -2.39 -0.02 2.09 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.43 6.87 -2.39 -0.02 1.41 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 44 H 0.38 18.96 6.22 -92.71 -0.58 18.38 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.09 1.81 7.68 -2.39 -0.02 1.79 16 47 H 0.06 1.63 7.59 -2.39 -0.02 1.62 16 48 H 0.11 0.79 5.21 -2.39 -0.01 0.78 16 49 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 50 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 51 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.23 399.02 3.32 -73.91 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.36 Total: 21.70 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.55 Total: 0.13 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.58 Total: -126.33 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.05 Total: -17.01 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.23 3.32 -73.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699849499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.068 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds