Wall clock time and date at job start Wed Apr 1 2020 04:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29108 * 126.00885 * 2 1 4 4 N 1.29018 * 110.25650 * 179.97438 * 3 2 1 5 5 C 1.32906 * 108.64129 * 359.97438 * 4 3 2 6 6 C 1.34406 * 126.00666 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25092 * 0.25037 * 6 2 1 8 8 C 1.53432 * 108.32126 * 163.48027 * 7 6 2 9 9 H 1.08999 * 109.44244 * 289.69451 * 8 7 6 10 10 C 1.50707 * 109.45803 * 169.73947 * 8 7 6 11 11 O 1.21272 * 119.99952 * 333.21704 * 10 8 7 12 12 N 1.34778 * 119.99824 * 153.21337 * 10 8 7 13 13 C 1.48144 * 127.83946 * 354.66486 * 12 10 8 14 14 C 1.54391 * 104.61752 * 140.41481 * 13 12 10 15 15 C 1.54283 * 104.95902 * 23.86497 * 14 13 12 16 16 C 1.53006 * 110.34396 * 241.02700 * 15 14 13 17 17 C 1.52996 * 110.34300 * 118.87734 * 15 14 13 18 18 N 1.46499 * 109.47464 * 62.86992 * 17 15 14 19 19 C 1.36936 * 120.00402 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99798 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00622 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99430 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00478 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47081 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47331 * 239.99986 * 23 21 19 26 26 H 1.48503 * 109.46963 * 119.99680 * 23 21 19 27 27 C 1.48310 * 127.76893 * 174.59074 * 12 10 8 28 28 C 1.53103 * 109.55555 * 49.71478 * 8 7 6 29 29 C 1.50599 * 129.16859 * 180.13826 * 5 4 3 30 30 H 1.08999 * 109.47432 * 89.96951 * 1 2 3 31 31 H 1.09000 * 109.47155 * 209.97155 * 1 2 3 32 32 H 1.08996 * 109.47071 * 329.97030 * 1 2 3 33 33 H 1.08994 * 109.69765 * 43.76884 * 7 6 2 34 34 H 1.09005 * 109.69198 * 283.18522 * 7 6 2 35 35 H 1.09002 * 110.40973 * 21.62982 * 13 12 10 36 36 H 1.09007 * 110.40968 * 259.19692 * 13 12 10 37 37 H 1.09008 * 110.34124 * 264.99641 * 14 13 12 38 38 H 1.09000 * 110.43352 * 142.78394 * 14 13 12 39 39 H 1.09010 * 109.46928 * 297.12646 * 16 15 14 40 40 H 1.08994 * 109.46945 * 57.12244 * 16 15 14 41 41 H 1.08996 * 109.47116 * 177.13008 * 16 15 14 42 42 H 1.09006 * 109.46611 * 302.87360 * 17 15 14 43 43 H 1.08996 * 109.47651 * 182.87801 * 17 15 14 44 44 H 0.97006 * 119.99882 * 0.02562 * 18 17 15 45 45 H 0.96995 * 120.00050 * 359.97438 * 22 21 19 46 46 H 1.09005 * 110.38316 * 100.79358 * 27 12 10 47 47 H 1.09002 * 110.50794 * 338.31391 * 27 12 10 48 48 H 1.09007 * 109.45485 * 49.96478 * 28 8 7 49 49 H 1.09000 * 109.46002 * 169.89807 * 28 8 7 50 50 H 1.09005 * 109.68961 * 43.77558 * 29 5 4 51 51 H 1.09003 * 109.72038 * 283.22331 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6941 0.0005 5 6 3.5328 -0.6332 0.0015 6 6 2.2552 -1.0873 0.0005 7 6 1.8721 -2.5430 -0.0040 8 6 3.1013 -3.3639 -0.4155 9 1 3.3139 -3.1946 -1.4711 10 6 2.8265 -4.8281 -0.1875 11 8 2.0303 -5.1707 0.6608 12 7 3.4655 -5.7567 -0.9263 13 6 4.3805 -5.5359 -2.0703 14 6 5.4998 -6.5824 -1.8815 15 6 4.8613 -7.6992 -1.0298 16 6 5.6107 -7.8518 0.2954 17 6 4.8663 -9.0225 -1.7978 18 7 6.2488 -9.4306 -2.0587 19 6 6.5034 -10.5922 -2.7378 20 1 5.6848 -11.2072 -3.0815 21 6 7.8134 -10.9792 -2.9847 22 7 8.8110 -10.2298 -2.5654 23 14 8.1605 -12.5640 -3.9104 24 1 6.8769 -13.2189 -4.2695 25 1 8.9580 -13.4750 -3.0506 26 1 8.9225 -12.2578 -5.1477 27 6 3.4122 -7.2312 -0.7761 28 6 4.3083 -2.9350 0.4231 29 6 4.7468 -1.5244 0.0052 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 1.0645 -2.7082 -0.7170 34 1 1.5487 -2.8408 0.9935 35 1 4.7934 -4.5277 -2.0377 36 1 3.8585 -5.7035 -3.0124 37 1 6.3462 -6.1412 -1.3550 38 1 5.8185 -6.9769 -2.8463 39 1 6.6385 -8.1570 0.0986 40 1 5.6097 -6.8992 0.8251 41 1 5.1179 -8.6079 0.9065 42 1 4.3402 -8.8953 -2.7440 43 1 4.3670 -9.7887 -1.2048 44 1 6.9841 -8.8780 -1.7504 45 1 8.6307 -9.4071 -2.0844 46 1 2.7381 -7.6640 -1.5153 47 1 3.0965 -7.5013 0.2316 48 1 4.0356 -2.9351 1.4785 49 1 5.1297 -3.6328 0.2607 50 1 5.4795 -1.1439 0.7170 51 1 5.1849 -1.5534 -0.9925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699849500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:55 Heat of formation + Delta-G solvation = 69.841707 kcal Electronic energy + Delta-G solvation = -31128.249145 eV Core-core repulsion = 27064.723680 eV Total energy + Delta-G solvation = -4063.525465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.74343 -40.53751 -38.60531 -36.80815 -35.26341 -35.09472 -32.95777 -31.01506 -30.86269 -30.02836 -29.56490 -28.25662 -26.97152 -25.52572 -24.47666 -23.59744 -23.01680 -22.59717 -21.77270 -20.37466 -19.26581 -18.67507 -17.62622 -17.39806 -17.32536 -16.92203 -16.12496 -15.60990 -15.04383 -14.99833 -14.47420 -14.30485 -14.22223 -14.10430 -13.92843 -13.71801 -13.64983 -13.48391 -13.28573 -13.12702 -12.87630 -12.58457 -12.55373 -12.45354 -12.17501 -11.86172 -11.75739 -11.54619 -11.41756 -11.28793 -10.93855 -10.90383 -10.76146 -10.53210 -10.41446 -10.31225 -10.22650 -10.06758 -9.92641 -9.21450 -9.17463 -8.91174 -8.81568 -7.03043 -6.13524 -3.13331 1.20419 1.93503 2.21799 2.40223 2.74488 3.49921 3.56074 3.65513 3.73737 3.97363 4.18305 4.26051 4.39620 4.42012 4.47063 4.56315 4.64379 4.66586 4.75747 4.78971 4.84458 4.95736 5.01163 5.05603 5.17477 5.19999 5.33027 5.39286 5.43219 5.44977 5.57626 5.60495 5.64989 5.66122 5.76027 5.78250 5.81060 5.82147 5.91577 5.92515 6.06573 6.12581 6.19532 6.29084 6.44454 6.51684 6.64754 6.70341 7.42033 7.79034 7.95633 8.18246 8.73008 9.19721 10.05999 10.20973 11.35053 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.227292 B =13828.691420 C =14315.713297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.019 4.019 6 C -0.016 4.016 7 C -0.028 4.028 8 C -0.097 4.097 9 H 0.099 0.901 10 C 0.541 3.459 11 O -0.544 6.544 12 N -0.617 5.617 13 C 0.098 3.902 14 C -0.125 4.125 15 C -0.081 4.081 16 C -0.129 4.129 17 C 0.173 3.827 18 N -0.740 5.740 19 C -0.331 4.331 20 H 0.065 0.935 21 C -0.045 4.045 22 N -0.945 5.945 23 Si 1.085 2.915 24 H -0.295 1.295 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.117 3.883 28 C -0.108 4.108 29 C -0.030 4.030 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.368 0.632 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.108 18.996 4.590 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.068 4.068 8 C -0.119 4.119 9 H 0.117 0.883 10 C 0.330 3.670 11 O -0.421 6.421 12 N -0.350 5.350 13 C -0.025 4.025 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.187 4.187 17 C 0.045 3.955 18 N -0.386 5.386 19 C -0.462 4.462 20 H 0.083 0.917 21 C -0.243 4.243 22 N -0.590 5.590 23 Si 0.916 3.084 24 H -0.222 1.222 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.006 4.006 28 C -0.146 4.146 29 C -0.069 4.069 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.597 19.359 4.428 25.251 hybrid contribution -1.327 0.046 0.537 1.433 sum -16.924 19.405 4.965 26.223 Atomic orbital electron populations 1.22302 0.72682 1.06099 1.05166 1.46830 1.09208 1.04560 1.46998 1.78594 0.96130 1.11234 1.21610 1.74807 1.09576 1.11924 1.16190 1.21698 0.94973 0.91368 1.07860 1.21753 0.91284 0.92101 1.09821 1.19972 0.97436 0.84962 1.04421 1.21264 0.96571 0.91323 1.02734 0.88325 1.19924 0.79898 0.86768 0.80440 1.90699 1.34908 1.82094 1.34441 1.49029 1.46372 1.07123 1.32486 1.22548 0.90910 1.00154 0.88844 1.22649 0.96913 0.94743 1.01999 1.21700 0.93678 0.96329 0.96515 1.21775 1.01134 1.00549 0.95226 1.20585 0.88459 0.91091 0.95410 1.42365 1.00911 1.26423 1.68911 1.20083 0.94493 0.99824 1.31761 0.91743 1.25748 0.91165 1.05233 1.02139 1.70832 1.32091 1.15167 1.40951 0.83154 0.74719 0.74603 0.75929 1.22156 1.22039 1.22041 1.22460 0.96804 0.78699 1.02634 1.21607 0.96545 0.96220 1.00273 1.19970 0.92578 0.90980 1.03411 0.88901 0.88160 0.87845 0.89788 0.88002 0.90300 0.90753 0.90928 0.89016 0.91568 0.93515 0.92722 0.96045 0.96074 0.79795 0.93408 0.90854 0.89930 0.90382 0.89652 0.89092 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.27 59.85 0.67 0.98 16 2 N -0.28 -2.55 3.73 -64.00 -0.24 -2.79 16 3 N -0.10 -1.18 13.19 60.35 0.80 -0.39 16 4 N -0.26 -3.40 12.40 33.16 0.41 -2.99 16 5 C -0.02 -0.20 7.11 -83.12 -0.59 -0.79 16 6 C -0.02 -0.14 6.76 -82.49 -0.56 -0.70 16 7 C -0.03 -0.22 4.98 -27.74 -0.14 -0.36 16 8 C -0.10 -0.80 1.90 -91.49 -0.17 -0.98 16 9 H 0.10 0.70 6.98 -51.93 -0.36 0.34 16 10 C 0.54 6.17 6.98 -10.98 -0.08 6.09 16 11 O -0.54 -7.98 16.23 5.56 0.09 -7.89 16 12 N -0.62 -6.98 3.32 -169.17 -0.56 -7.54 16 13 C 0.10 0.97 6.75 -2.41 -0.02 0.95 16 14 C -0.12 -1.59 5.84 -25.33 -0.15 -1.74 16 15 C -0.08 -1.16 0.73 -153.11 -0.11 -1.27 16 16 C -0.13 -1.92 8.06 37.16 0.30 -1.62 16 17 C 0.17 3.21 4.89 -4.04 -0.02 3.19 16 18 N -0.74 -17.38 4.95 -59.91 -0.30 -17.68 16 19 C -0.33 -9.00 9.99 -15.06 -0.15 -9.15 16 20 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 21 C -0.05 -1.28 5.50 -17.43 -0.10 -1.38 16 22 N -0.94 -28.34 13.70 55.49 0.76 -27.58 16 23 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 24 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.12 1.50 6.13 -2.32 -0.01 1.49 16 28 C -0.11 -0.84 5.19 -26.41 -0.14 -0.98 16 29 C -0.03 -0.24 6.30 -27.67 -0.17 -0.41 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.22 7.96 -51.93 -0.41 -0.19 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.87 7.50 -51.93 -0.39 0.48 16 35 H 0.08 0.60 6.93 -51.93 -0.36 0.24 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.90 7.71 -51.92 -0.40 0.50 16 38 H 0.09 1.37 7.53 -51.93 -0.39 0.98 16 39 H 0.07 1.11 6.87 -51.92 -0.36 0.76 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.37 8.77 5.06 -40.82 -0.21 8.56 16 45 H 0.25 7.46 6.77 -40.82 -0.28 7.19 16 46 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 47 H 0.08 1.13 7.65 -51.93 -0.40 0.73 16 48 H 0.08 0.66 8.12 -51.92 -0.42 0.24 16 49 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -35.44 401.47 -7.75 -43.19 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.24 Total: 3.90 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.43 Total: -6.68 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.87 Total: -58.97 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.44 -7.75 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699849500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.027 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds