Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29108 * 126.00885 * 2 1 4 4 N 1.29018 * 110.25650 * 179.97438 * 3 2 1 5 5 C 1.32906 * 108.64129 * 359.97438 * 4 3 2 6 6 C 1.34406 * 126.00666 * 179.97438 * 2 1 3 7 7 C 1.50532 * 129.25092 * 0.25037 * 6 2 1 8 8 C 1.53432 * 108.32126 * 163.48027 * 7 6 2 9 9 H 1.08999 * 109.44244 * 289.69451 * 8 7 6 10 10 C 1.50707 * 109.45803 * 169.73947 * 8 7 6 11 11 O 1.21272 * 119.99952 * 333.21704 * 10 8 7 12 12 N 1.34778 * 119.99824 * 153.21337 * 10 8 7 13 13 C 1.48144 * 127.83946 * 354.66486 * 12 10 8 14 14 C 1.54391 * 104.61752 * 140.41481 * 13 12 10 15 15 C 1.54283 * 104.95902 * 23.86497 * 14 13 12 16 16 C 1.53006 * 110.34396 * 241.02700 * 15 14 13 17 17 C 1.52996 * 110.34300 * 118.87734 * 15 14 13 18 18 N 1.46499 * 109.47464 * 62.86992 * 17 15 14 19 19 C 1.36936 * 120.00402 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99798 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00622 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99430 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00478 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47081 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47331 * 239.99986 * 23 21 19 26 26 H 1.48503 * 109.46963 * 119.99680 * 23 21 19 27 27 C 1.48310 * 127.76893 * 174.59074 * 12 10 8 28 28 C 1.53103 * 109.55555 * 49.71478 * 8 7 6 29 29 C 1.50599 * 129.16859 * 180.13826 * 5 4 3 30 30 H 1.08999 * 109.47432 * 89.96951 * 1 2 3 31 31 H 1.09000 * 109.47155 * 209.97155 * 1 2 3 32 32 H 1.08996 * 109.47071 * 329.97030 * 1 2 3 33 33 H 1.08994 * 109.69765 * 43.76884 * 7 6 2 34 34 H 1.09005 * 109.69198 * 283.18522 * 7 6 2 35 35 H 1.09002 * 110.40973 * 21.62982 * 13 12 10 36 36 H 1.09007 * 110.40968 * 259.19692 * 13 12 10 37 37 H 1.09008 * 110.34124 * 264.99641 * 14 13 12 38 38 H 1.09000 * 110.43352 * 142.78394 * 14 13 12 39 39 H 1.09010 * 109.46928 * 297.12646 * 16 15 14 40 40 H 1.08994 * 109.46945 * 57.12244 * 16 15 14 41 41 H 1.08996 * 109.47116 * 177.13008 * 16 15 14 42 42 H 1.09006 * 109.46611 * 302.87360 * 17 15 14 43 43 H 1.08996 * 109.47651 * 182.87801 * 17 15 14 44 44 H 0.97006 * 119.99882 * 0.02562 * 18 17 15 45 45 H 0.96995 * 120.00050 * 359.97438 * 22 21 19 46 46 H 1.09005 * 110.38316 * 100.79358 * 27 12 10 47 47 H 1.09002 * 110.50794 * 338.31391 * 27 12 10 48 48 H 1.09007 * 109.45485 * 49.96478 * 28 8 7 49 49 H 1.09000 * 109.46002 * 169.89807 * 28 8 7 50 50 H 1.09005 * 109.68961 * 43.77558 * 29 5 4 51 51 H 1.09003 * 109.72038 * 283.22331 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6941 0.0005 5 6 3.5328 -0.6332 0.0015 6 6 2.2552 -1.0873 0.0005 7 6 1.8721 -2.5430 -0.0040 8 6 3.1013 -3.3639 -0.4155 9 1 3.3139 -3.1946 -1.4711 10 6 2.8265 -4.8281 -0.1875 11 8 2.0303 -5.1707 0.6608 12 7 3.4655 -5.7567 -0.9263 13 6 4.3805 -5.5359 -2.0703 14 6 5.4998 -6.5824 -1.8815 15 6 4.8613 -7.6992 -1.0298 16 6 5.6107 -7.8518 0.2954 17 6 4.8663 -9.0225 -1.7978 18 7 6.2488 -9.4306 -2.0587 19 6 6.5034 -10.5922 -2.7378 20 1 5.6848 -11.2072 -3.0815 21 6 7.8134 -10.9792 -2.9847 22 7 8.8110 -10.2298 -2.5654 23 14 8.1605 -12.5640 -3.9104 24 1 6.8769 -13.2189 -4.2695 25 1 8.9580 -13.4750 -3.0506 26 1 8.9225 -12.2578 -5.1477 27 6 3.4122 -7.2312 -0.7761 28 6 4.3083 -2.9350 0.4231 29 6 4.7468 -1.5244 0.0052 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 1.0645 -2.7082 -0.7170 34 1 1.5487 -2.8408 0.9935 35 1 4.7934 -4.5277 -2.0377 36 1 3.8585 -5.7035 -3.0124 37 1 6.3462 -6.1412 -1.3550 38 1 5.8185 -6.9769 -2.8463 39 1 6.6385 -8.1570 0.0986 40 1 5.6097 -6.8992 0.8251 41 1 5.1179 -8.6079 0.9065 42 1 4.3402 -8.8953 -2.7440 43 1 4.3670 -9.7887 -1.2048 44 1 6.9841 -8.8780 -1.7504 45 1 8.6307 -9.4071 -2.0844 46 1 2.7381 -7.6640 -1.5153 47 1 3.0965 -7.5013 0.2316 48 1 4.0356 -2.9351 1.4785 49 1 5.1297 -3.6328 0.2607 50 1 5.4795 -1.1439 0.7170 51 1 5.1849 -1.5534 -0.9925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699849500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = 46.647446 kcal Electronic energy + Delta-G solvation = -31129.254924 eV Core-core repulsion = 27064.723680 eV Total energy + Delta-G solvation = -4064.531244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.45930 -41.47872 -39.65480 -37.58791 -36.71011 -35.90086 -34.46777 -32.05034 -31.59922 -31.33623 -30.61729 -28.77157 -28.04441 -27.05325 -25.52015 -24.64676 -24.19771 -23.81014 -22.41898 -21.12292 -20.27343 -19.67893 -19.36428 -18.43646 -18.00534 -17.64642 -17.30546 -16.56022 -16.24108 -15.85674 -15.71543 -15.57669 -15.25336 -14.94322 -14.87846 -14.78321 -14.72770 -14.28701 -14.18201 -14.09767 -13.76246 -13.70169 -13.53360 -13.19992 -13.05221 -12.81407 -12.76330 -12.66819 -12.59325 -12.38909 -12.18791 -12.04158 -11.90127 -11.79749 -11.70777 -11.60041 -11.49981 -11.18343 -10.97330 -10.90515 -10.82643 -9.89932 -9.76896 -9.04639 -8.35144 -5.28346 0.50892 1.38868 1.44220 1.53953 1.60905 1.71445 1.83122 1.87878 2.73306 3.06807 3.29323 3.43180 3.47968 3.63024 3.64158 3.71365 3.74878 3.80356 3.85898 4.06071 4.13617 4.17644 4.24708 4.27186 4.29276 4.36746 4.39419 4.45455 4.55660 4.60792 4.62213 4.68821 4.71590 4.79592 4.85442 4.85610 4.91968 4.95683 4.99965 5.01622 5.04175 5.10098 5.16244 5.28226 5.30596 5.35403 5.40846 5.59583 5.63632 6.53790 6.55452 7.06560 7.14772 7.42571 8.06001 8.16460 9.17217 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.227292 B =13828.691420 C =14315.713297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.128 5.128 4 N -0.300 5.300 5 C -0.032 4.032 6 C -0.012 4.012 7 C -0.021 4.021 8 C -0.089 4.089 9 H 0.120 0.880 10 C 0.544 3.456 11 O -0.578 6.578 12 N -0.615 5.615 13 C 0.106 3.894 14 C -0.122 4.122 15 C -0.073 4.073 16 C -0.123 4.123 17 C 0.172 3.828 18 N -0.748 5.748 19 C -0.330 4.330 20 H 0.063 0.937 21 C -0.103 4.103 22 N -0.976 5.976 23 Si 1.129 2.871 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.123 3.877 28 C -0.102 4.102 29 C -0.026 4.026 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.025 0.975 43 H 0.013 0.987 44 H 0.365 0.635 45 H 0.246 0.754 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 19.467 3.818 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.106 5.106 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.061 4.061 8 C -0.111 4.111 9 H 0.138 0.862 10 C 0.334 3.666 11 O -0.458 6.458 12 N -0.347 5.347 13 C -0.016 4.016 14 C -0.161 4.161 15 C -0.074 4.074 16 C -0.181 4.181 17 C 0.045 3.955 18 N -0.394 5.394 19 C -0.462 4.462 20 H 0.081 0.919 21 C -0.295 4.295 22 N -0.624 5.624 23 Si 0.955 3.045 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.218 1.218 27 C -0.001 4.001 28 C -0.140 4.140 29 C -0.065 4.065 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.198 0.802 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.074 19.871 3.655 26.452 hybrid contribution -1.002 -0.117 0.824 1.303 sum -18.076 19.754 4.479 27.148 Atomic orbital electron populations 1.22758 0.70059 1.07664 1.06937 1.47214 1.10689 1.03843 1.45163 1.78508 0.96379 1.12472 1.23222 1.74750 1.10378 1.13426 1.17739 1.22182 0.96474 0.90963 1.07747 1.21940 0.90997 0.92657 1.09163 1.19954 0.97773 0.83757 1.04601 1.21263 0.96902 0.88884 1.04056 0.86245 1.20401 0.79022 0.87710 0.79475 1.90692 1.36483 1.82773 1.35849 1.49039 1.46538 1.06266 1.32877 1.22609 0.89608 1.00754 0.88651 1.22568 0.98186 0.94932 1.00377 1.21533 0.95195 0.94794 0.95894 1.21701 0.99496 1.01264 0.95609 1.20700 0.85796 0.93112 0.95894 1.42506 1.02823 1.25559 1.68481 1.20405 0.94415 1.00601 1.30730 0.91870 1.27064 0.91436 1.07744 1.03239 1.70934 1.32896 1.15720 1.42843 0.82574 0.75480 0.71607 0.74818 1.19867 1.22101 1.21793 1.22261 0.95365 0.80121 1.02335 1.21557 0.96566 0.96253 0.99648 1.20026 0.91786 0.90355 1.04334 0.86966 0.86146 0.86869 0.87974 0.88674 0.87093 0.89537 0.90461 0.91252 0.94045 0.91651 0.93316 0.95740 0.96920 0.80211 0.94372 0.90316 0.90756 0.91322 0.88807 0.88926 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 11.27 127.77 1.44 1.81 16 2 N -0.28 -4.54 3.73 -356.41 -1.33 -5.87 16 3 N -0.13 -3.04 13.19 37.02 0.49 -2.55 16 4 N -0.30 -7.70 12.40 -48.99 -0.61 -8.31 16 5 C -0.03 -0.64 7.11 41.75 0.30 -0.34 16 6 C -0.01 -0.20 6.76 41.50 0.28 0.08 16 7 C -0.02 -0.28 4.98 29.94 0.15 -0.13 16 8 C -0.09 -1.20 1.90 -11.36 -0.02 -1.22 16 9 H 0.12 1.16 6.98 -2.39 -0.02 1.14 16 10 C 0.54 10.91 6.98 87.66 0.61 11.52 16 11 O -0.58 -15.88 16.23 -3.00 -0.05 -15.93 16 12 N -0.61 -12.19 3.32 -807.52 -2.68 -14.87 16 13 C 0.11 1.73 6.75 86.54 0.58 2.31 16 14 C -0.12 -2.92 5.84 31.50 0.18 -2.74 16 15 C -0.07 -2.02 0.73 -51.28 -0.04 -2.06 16 16 C -0.12 -3.60 8.06 71.98 0.58 -3.02 16 17 C 0.17 6.35 4.89 86.38 0.42 6.77 16 18 N -0.75 -35.48 4.95 -343.46 -1.70 -37.18 16 19 C -0.33 -17.98 9.99 84.03 0.84 -17.14 16 20 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 21 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 22 N -0.98 -59.31 13.70 21.65 0.30 -59.01 16 23 Si 1.13 51.14 29.92 68.60 2.05 53.19 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 C 0.12 2.95 6.13 86.50 0.53 3.48 16 28 C -0.10 -1.32 5.19 30.80 0.16 -1.16 16 29 C -0.03 -0.36 6.30 29.99 0.19 -0.17 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.12 0.19 7.96 -2.39 -0.02 0.18 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.41 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.43 7.50 -2.38 -0.02 1.41 16 35 H 0.11 1.16 6.93 -2.39 -0.02 1.15 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.78 7.71 -2.38 -0.02 1.76 16 38 H 0.07 2.01 7.53 -2.39 -0.02 1.99 16 39 H 0.04 1.41 6.87 -2.38 -0.02 1.39 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.36 17.74 5.06 -92.70 -0.47 17.27 16 45 H 0.25 14.76 6.77 -92.71 -0.63 14.13 16 46 H 0.08 1.83 7.86 -2.38 -0.02 1.81 16 47 H 0.07 1.94 7.65 -2.39 -0.02 1.92 16 48 H 0.07 1.04 8.12 -2.38 -0.02 1.02 16 49 H 0.09 1.09 8.11 -2.39 -0.02 1.07 16 50 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.87 401.47 3.76 -74.12 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.61 Total: 23.81 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 6.68 Total: -7.39 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.53 Total: -127.80 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.05 Total: -15.93 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -77.87 3.76 -74.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699849500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.763 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds