Wall clock time and date at job start Wed Apr 1 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 126.46594 * 2 1 4 4 N 1.28908 * 109.74193 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47841 * 359.97438 * 4 3 2 6 6 N 1.34698 * 126.46076 * 179.97438 * 2 1 3 7 7 C 1.46248 * 128.84911 * 0.16054 * 6 2 1 8 8 C 1.53321 * 108.72844 * 162.87378 * 7 6 2 9 9 H 1.09004 * 109.45228 * 290.26290 * 8 7 6 10 10 C 1.50703 * 109.45425 * 170.33083 * 8 7 6 11 11 O 1.21281 * 119.99900 * 359.88739 * 10 8 7 12 12 N 1.34771 * 119.99905 * 179.88396 * 10 8 7 13 13 C 1.47425 * 125.65075 * 355.04869 * 12 10 8 14 14 C 1.54911 * 104.83219 * 204.08852 * 13 12 10 15 15 C 1.55152 * 101.57800 * 322.98631 * 14 13 12 16 16 C 1.47029 * 125.64666 * 174.73250 * 12 10 8 17 17 H 1.08995 * 109.87822 * 59.56479 * 16 12 10 18 18 C 1.53001 * 109.87828 * 298.39575 * 16 12 10 19 19 N 1.46511 * 109.46564 * 174.80294 * 18 16 12 20 20 C 1.46497 * 119.99827 * 274.71539 * 19 18 16 21 21 C 1.36936 * 119.99739 * 94.71556 * 19 18 16 22 22 H 1.07995 * 120.00214 * 352.47348 * 21 19 18 23 23 C 1.38810 * 119.99774 * 172.47109 * 21 19 18 24 24 N 1.31620 * 119.99990 * 5.71483 * 23 21 19 25 25 Si 1.86802 * 119.99889 * 185.71037 * 23 21 19 26 26 H 1.48503 * 109.47042 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47124 * 120.00357 * 25 23 21 28 28 H 1.48499 * 109.47105 * 240.00008 * 25 23 21 29 29 C 1.53142 * 109.58133 * 50.29684 * 8 7 6 30 30 C 1.50796 * 128.52475 * 180.09723 * 5 4 3 31 31 H 1.08997 * 109.47006 * 270.02581 * 1 2 3 32 32 H 1.09000 * 109.47022 * 30.01999 * 1 2 3 33 33 H 1.08997 * 109.47744 * 150.01674 * 1 2 3 34 34 H 1.09007 * 109.59664 * 43.10212 * 7 6 2 35 35 H 1.09003 * 109.59983 * 282.65126 * 7 6 2 36 36 H 1.09005 * 110.36310 * 322.91953 * 13 12 10 37 37 H 1.08998 * 110.37055 * 85.24937 * 13 12 10 38 38 H 1.09002 * 111.00347 * 81.06144 * 14 13 12 39 39 H 1.09003 * 111.00339 * 204.91263 * 14 13 12 40 40 H 1.09004 * 110.72081 * 153.86492 * 15 14 13 41 41 H 1.08995 * 110.72298 * 277.13610 * 15 14 13 42 42 H 1.08997 * 109.47716 * 294.79944 * 18 16 12 43 43 H 1.08995 * 109.46972 * 54.80927 * 18 16 12 44 44 H 1.08993 * 109.47373 * 4.10591 * 20 19 18 45 45 H 1.09004 * 109.46724 * 124.10982 * 20 19 18 46 46 H 1.08998 * 109.47190 * 244.10299 * 20 19 18 47 47 H 0.97004 * 119.99836 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.49805 * 50.52067 * 29 8 7 49 49 H 1.08997 * 109.50062 * 170.62002 * 29 8 7 50 50 H 1.09000 * 109.73041 * 44.44575 * 30 5 4 51 51 H 1.09000 * 109.72877 * 283.76232 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5816 -0.6157 0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9366 -2.4980 -0.0021 8 6 3.1550 -3.3256 -0.4279 9 1 3.3621 -3.1499 -1.4836 10 6 2.8688 -4.7890 -0.2098 11 8 1.7988 -5.1367 0.2430 12 7 3.8020 -5.7113 -0.5179 13 6 5.0973 -5.4394 -1.1672 14 6 5.4906 -6.7767 -1.8430 15 6 4.9842 -7.8115 -0.8038 16 6 3.6995 -7.1545 -0.2563 17 1 2.8288 -7.5632 -0.7691 18 6 3.5852 -7.4036 1.2489 19 7 3.3593 -8.8306 1.4919 20 6 2.0000 -9.3751 1.4468 21 6 4.4187 -9.6554 1.7612 22 1 5.4287 -9.2826 1.6754 23 6 4.1945 -10.9705 2.1446 24 7 2.9718 -11.4577 2.1408 25 14 5.6280 -12.0488 2.6658 26 1 6.8893 -11.2693 2.5835 27 1 5.4203 -12.5073 4.0629 28 1 5.7140 -13.2269 1.7658 29 6 4.3718 -2.9140 0.4059 30 6 4.8051 -1.4971 0.0044 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.1202 -2.6607 -0.7058 35 1 1.6241 -2.7959 0.9988 36 1 4.9892 -4.6539 -1.9152 37 1 5.8425 -5.1566 -0.4237 38 1 4.9777 -6.8980 -2.7971 39 1 6.5709 -6.8473 -1.9702 40 1 4.7583 -8.7629 -1.2855 41 1 5.7144 -7.9459 -0.0059 42 1 4.5076 -7.0930 1.7397 43 1 2.7494 -6.8300 1.6496 44 1 1.3041 -8.5908 1.1492 45 1 1.9591 -10.1905 0.7246 46 1 1.7255 -9.7492 2.4331 47 1 2.8150 -12.3767 2.4091 48 1 4.1100 -2.9295 1.4639 49 1 5.1905 -3.6100 0.2230 50 1 5.5304 -1.1175 0.7240 51 1 5.2482 -1.5148 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700363089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:42 Heat of formation + Delta-G solvation = 75.686028 kcal Electronic energy + Delta-G solvation = -31843.503082 eV Core-core repulsion = 27780.231046 eV Total energy + Delta-G solvation = -4063.272036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.54895 -40.50459 -38.01497 -36.78464 -35.41495 -34.42330 -32.32816 -31.52243 -31.22888 -30.63671 -29.04196 -27.61741 -25.98625 -25.55982 -25.19639 -23.70448 -22.62014 -21.62768 -21.35081 -20.54191 -19.89977 -18.73038 -17.67259 -17.00261 -16.88528 -16.43277 -15.96631 -15.54560 -15.33434 -14.84221 -14.73823 -14.38858 -14.18579 -13.91603 -13.75832 -13.52869 -13.38882 -13.19276 -12.96399 -12.93555 -12.74980 -12.55041 -12.46408 -12.12690 -11.88393 -11.73531 -11.59706 -11.37948 -11.24057 -11.06705 -10.97026 -10.81035 -10.55045 -10.51419 -10.39226 -10.34250 -10.14660 -9.94933 -9.81679 -9.66400 -9.18949 -8.72646 -8.46867 -6.91510 -5.66818 -3.10245 1.57552 2.12602 2.48867 2.64299 2.94152 3.34535 3.40357 3.43069 3.75375 3.94490 4.02581 4.18084 4.21843 4.46151 4.53121 4.58724 4.62885 4.70424 4.82099 4.90018 4.95918 5.05312 5.11597 5.18102 5.25795 5.25967 5.37470 5.40143 5.44836 5.53039 5.55584 5.58584 5.63843 5.69118 5.74826 5.83899 5.94038 5.96192 6.18682 6.21958 6.43511 6.52236 6.60825 6.68640 6.84840 6.85478 7.55350 7.63822 7.70388 7.93727 8.09737 8.35606 8.53227 9.24255 9.87212 10.31697 11.32454 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002507 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.795910 B =11167.187718 C =11766.910092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.302 5.302 4 N -0.292 5.292 5 C 0.172 3.828 6 N -0.468 5.468 7 C 0.124 3.876 8 C -0.118 4.118 9 H 0.107 0.893 10 C 0.536 3.464 11 O -0.532 6.532 12 N -0.605 5.605 13 C 0.096 3.904 14 C -0.138 4.138 15 C -0.109 4.109 16 C 0.113 3.887 17 H 0.070 0.930 18 C 0.151 3.849 19 N -0.605 5.605 20 C 0.169 3.831 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 C -0.125 4.125 30 C -0.030 4.030 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.046 0.954 44 H -0.007 1.007 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.249 0.751 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.105 0.895 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 17.745 -8.768 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.143 5.143 4 N -0.131 5.131 5 C -0.095 4.095 6 N -0.159 5.159 7 C 0.001 3.999 8 C -0.140 4.140 9 H 0.125 0.875 10 C 0.322 3.678 11 O -0.409 6.409 12 N -0.339 5.339 13 C -0.027 4.027 14 C -0.176 4.176 15 C -0.147 4.147 16 C 0.008 3.992 17 H 0.088 0.912 18 C 0.022 3.978 19 N -0.329 5.329 20 C 0.025 3.975 21 C -0.373 4.373 22 H 0.092 0.908 23 C -0.201 4.201 24 N -0.563 5.563 25 Si 0.736 3.264 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.163 4.163 30 C -0.069 4.069 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.012 0.988 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.117 0.883 50 H 0.123 0.877 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.431 18.850 -8.434 20.700 hybrid contribution 0.348 -2.085 0.154 2.119 sum 1.779 16.765 -8.281 18.783 Atomic orbital electron populations 1.20231 0.83665 1.04547 1.04235 1.24675 0.97134 0.82715 1.04272 1.74477 0.96120 1.23690 1.19979 1.74035 1.12335 1.08050 1.18701 1.24713 0.87107 0.92563 1.05135 1.46012 1.07000 1.08536 1.54364 1.21786 0.97626 0.75104 1.05412 1.21565 0.96207 0.93220 1.02999 0.87541 1.19546 0.83588 0.86053 0.78631 1.90762 1.23520 1.81454 1.45146 1.48674 1.17486 1.08671 1.59090 1.22448 0.85539 0.98521 0.96215 1.22847 1.01457 0.94348 0.98941 1.22556 0.96395 0.97854 0.97860 1.22810 0.98584 0.76865 1.00903 0.91182 1.20975 0.99288 0.86603 0.90960 1.43993 1.04606 1.02134 1.82120 1.21030 0.82007 0.93360 1.01059 1.19315 0.86891 0.92255 1.38799 0.90804 1.24899 0.96479 0.97523 1.01230 1.70247 1.18054 1.14627 1.53393 0.86157 0.81468 0.80548 0.78218 1.20544 1.21734 1.21848 1.21878 0.97359 0.96400 1.00709 1.20227 0.91212 0.90986 1.04495 0.89448 0.88686 0.90286 0.87929 0.87708 0.91106 0.90976 0.91063 0.90073 0.89928 0.90106 0.93606 0.93600 0.98849 0.93903 0.94110 0.94006 0.90054 0.88306 0.87667 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.29 36.01 0.37 -0.10 16 2 C 0.18 2.00 8.07 -155.45 -1.25 0.74 16 3 N -0.30 -4.29 12.23 32.70 0.40 -3.89 16 4 N -0.29 -4.14 12.21 32.76 0.40 -3.74 16 5 C 0.17 1.91 7.75 -155.29 -1.20 0.71 16 6 N -0.47 -4.87 3.11 -110.86 -0.35 -5.22 16 7 C 0.12 1.13 5.48 -4.01 -0.02 1.11 16 8 C -0.12 -1.03 1.92 -91.53 -0.18 -1.20 16 9 H 0.11 0.77 7.74 -51.93 -0.40 0.37 16 10 C 0.54 6.80 6.91 -10.99 -0.08 6.72 16 11 O -0.53 -8.90 15.01 5.56 0.08 -8.81 16 12 N -0.61 -7.63 3.04 -163.01 -0.50 -8.12 16 13 C 0.10 0.85 5.34 -2.53 -0.01 0.83 16 14 C -0.14 -1.36 7.09 -24.58 -0.17 -1.54 16 15 C -0.11 -1.58 5.76 -24.89 -0.14 -1.72 16 16 C 0.11 1.86 3.09 -66.94 -0.21 1.65 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.15 3.00 5.07 -4.04 -0.02 2.98 16 19 N -0.61 -14.71 2.84 -181.12 -0.51 -15.23 16 20 C 0.17 4.29 8.99 59.85 0.54 4.82 16 21 C -0.24 -6.29 8.99 -15.06 -0.14 -6.43 16 22 H 0.07 1.82 7.05 -52.49 -0.37 1.45 16 23 C -0.01 -0.14 5.46 -17.43 -0.10 -0.23 16 24 N -0.92 -26.12 9.46 55.49 0.53 -25.59 16 25 Si 0.91 21.22 29.56 -169.99 -5.02 16.20 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 C -0.13 -0.92 5.14 -26.39 -0.14 -1.06 16 30 C -0.03 -0.21 6.34 -27.57 -0.17 -0.39 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.43 7.76 -51.93 -0.40 0.03 16 34 H 0.10 0.84 7.85 -51.93 -0.41 0.43 16 35 H 0.10 1.04 7.79 -51.93 -0.40 0.64 16 36 H 0.07 0.46 7.51 -51.93 -0.39 0.07 16 37 H 0.07 0.55 6.79 -51.93 -0.35 0.20 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.27 6.79 -51.93 -0.35 0.92 16 42 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 43 H 0.05 0.97 6.80 -51.93 -0.35 0.62 16 44 H -0.01 -0.17 7.89 -51.93 -0.41 -0.58 16 45 H 0.04 1.16 7.09 -51.93 -0.37 0.79 16 46 H 0.04 1.12 7.01 -51.93 -0.36 0.76 16 47 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 49 H 0.10 0.62 5.04 -51.93 -0.26 0.36 16 50 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -34.06 392.99 -10.16 -44.21 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.19 Total: -2.64 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.92 Total: 6.91 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.03 Total: -61.78 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.06 -10.16 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700363089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.899 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds