Wall clock time and date at job start Wed Apr 1 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31807 * 119.12089 * 2 1 4 4 C 1.32326 * 120.81625 * 179.72591 * 3 2 1 5 5 C 1.38625 * 119.09900 * 0.57509 * 4 3 2 6 6 C 1.38570 * 118.40151 * 359.44150 * 5 4 3 7 7 C 1.50697 * 120.44898 * 180.29900 * 6 5 4 8 8 C 1.52996 * 109.47473 * 124.99742 * 7 6 5 9 9 C 1.50697 * 109.47473 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99812 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99955 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99688 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46887 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47027 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00113 * 294.29885 * 14 13 12 16 16 C 1.53234 * 109.34240 * 172.74907 * 15 14 13 17 17 N 1.47077 * 108.52533 * 53.82954 * 16 15 14 18 18 C 1.36933 * 120.88242 * 128.83889 * 17 16 15 19 19 H 1.08003 * 119.99847 * 333.49076 * 18 17 16 20 20 C 1.38810 * 119.99999 * 153.49228 * 18 17 16 21 21 N 1.31622 * 119.99653 * 159.44213 * 20 18 17 22 22 Si 1.86793 * 120.00104 * 339.43879 * 20 18 17 23 23 H 1.48495 * 109.47258 * 91.97734 * 22 20 18 24 24 H 1.48501 * 109.47453 * 211.98064 * 22 20 18 25 25 H 1.48505 * 109.47247 * 331.97848 * 22 20 18 26 26 C 1.47080 * 118.23674 * 308.82092 * 17 16 15 27 27 C 1.46905 * 111.00083 * 169.99916 * 14 13 12 28 28 N 1.31778 * 119.12296 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47191 * 269.97528 * 1 2 3 30 30 H 1.09001 * 109.47146 * 29.97690 * 1 2 3 31 31 H 1.09001 * 109.47191 * 149.97937 * 1 2 3 32 32 H 1.07998 * 120.44515 * 180.31550 * 4 3 2 33 33 H 1.07996 * 120.79378 * 179.71484 * 5 4 3 34 34 H 1.08998 * 109.47205 * 244.99870 * 7 6 5 35 35 H 1.09000 * 109.47167 * 4.99786 * 7 6 5 36 36 H 1.09008 * 109.47244 * 300.00756 * 8 7 6 37 37 H 1.09000 * 109.46888 * 59.99873 * 8 7 6 38 38 H 0.97000 * 120.00393 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47147 * 299.99863 * 12 11 9 40 40 H 1.09003 * 109.47389 * 60.00472 * 12 11 9 41 41 H 1.09004 * 109.47662 * 299.99705 * 13 12 11 42 42 H 1.08996 * 109.47644 * 60.00234 * 13 12 11 43 43 H 1.09002 * 109.49587 * 292.71337 * 15 14 13 44 44 H 1.09005 * 109.49060 * 52.78307 * 15 14 13 45 45 H 1.09006 * 109.62881 * 294.11988 * 16 15 14 46 46 H 1.09003 * 109.62918 * 173.54369 * 16 15 14 47 47 H 0.97005 * 119.99214 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.62512 * 291.47085 * 26 17 16 49 49 H 1.09000 * 109.79032 * 170.98708 * 26 17 16 50 50 H 1.09004 * 109.49297 * 307.21079 * 27 14 13 51 51 H 1.08998 * 109.49237 * 67.29364 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 0.0054 5 6 4.1809 -0.0002 -0.0010 6 6 3.4713 -1.1904 -0.0010 7 6 4.1961 -2.5116 -0.0011 8 6 3.7162 -3.3568 1.1805 9 6 4.4415 -4.6777 1.1808 10 8 5.2619 -4.9192 0.3208 11 7 4.1784 -5.5907 2.1366 12 6 4.8839 -6.8747 2.1372 13 6 4.4029 -7.7203 3.3180 14 7 5.1108 -9.0075 3.3190 15 6 4.7527 -9.8061 2.1392 16 6 5.6412 -11.0533 2.0818 17 7 5.5366 -11.7610 3.3668 18 6 5.2509 -13.0995 3.4108 19 1 4.6953 -13.5598 2.6072 20 6 5.6755 -13.8648 4.4883 21 7 5.0887 -15.0131 4.7517 22 14 7.0796 -13.2649 5.5644 23 1 6.5319 -12.4876 6.7050 24 1 7.8411 -14.4308 6.0801 25 1 7.9822 -12.3993 4.7634 26 6 5.7474 -10.9931 4.6034 27 6 4.8547 -9.7483 4.5615 28 7 2.1484 -1.1512 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1375 0.0105 33 1 5.2609 -0.0001 -0.0014 34 1 3.9901 -3.0390 -0.9325 35 1 5.2685 -2.3378 0.0884 36 1 3.9221 -2.8293 2.1120 37 1 2.6439 -3.5306 1.0910 38 1 3.5219 -5.3977 2.8242 39 1 4.6791 -7.4022 1.2057 40 1 5.9561 -6.7001 2.2278 41 1 4.6074 -7.1930 4.2499 42 1 3.3308 -7.8950 3.2271 43 1 3.7073 -10.1071 2.2072 44 1 4.9023 -9.2111 1.2382 45 1 6.6762 -10.7579 1.9097 46 1 5.3048 -11.7057 1.2760 47 1 5.3857 -15.5480 5.5045 48 1 6.7926 -10.6919 4.6736 49 1 5.4836 -11.6040 5.4667 50 1 5.0783 -9.1113 5.4173 51 1 3.8079 -10.0501 4.5958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713076016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:15 Heat of formation + Delta-G solvation = 41.633438 kcal Electronic energy + Delta-G solvation = -29145.720326 eV Core-core repulsion = 25080.971658 eV Total energy + Delta-G solvation = -4064.748668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.58765 -39.97202 -38.50572 -35.88850 -35.38721 -34.10170 -33.89050 -32.11608 -31.57428 -30.53562 -29.34568 -28.92425 -26.72061 -25.51039 -23.73938 -23.56058 -22.63234 -22.17120 -21.58501 -20.56246 -19.44599 -18.10287 -17.54712 -16.93401 -16.51719 -16.26275 -16.05510 -15.68152 -15.64866 -15.40600 -15.11156 -14.51176 -14.33709 -14.12574 -14.03994 -13.85644 -13.74254 -13.54715 -13.19791 -13.03228 -12.85096 -12.80730 -12.54490 -12.47231 -12.11823 -11.80985 -11.73002 -11.65623 -11.38691 -11.32495 -10.99273 -10.90345 -10.61352 -10.33070 -10.16648 -10.07939 -9.88096 -9.81521 -9.69414 -9.46664 -9.23943 -8.65985 -8.09889 -6.97077 -5.94938 -3.30219 0.40640 0.56976 2.40731 2.83398 3.23592 3.31611 3.39960 3.49447 3.54063 3.60007 3.93451 4.21580 4.32902 4.53435 4.54641 4.58708 4.64387 4.69790 4.84686 4.88150 4.95210 4.98874 5.03675 5.06960 5.14116 5.31030 5.31629 5.39357 5.42074 5.52385 5.58966 5.60859 5.68192 5.77234 5.89131 5.91619 5.94875 6.00057 6.05314 6.18060 6.22125 6.36589 6.54446 6.56064 6.64044 6.87005 7.21501 7.32751 7.38205 7.62906 7.93869 7.97831 8.32274 8.92787 9.71597 10.10817 11.21083 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.001456 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.510110 B =19229.898759 C =19414.791521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.320 3.680 3 N -0.526 5.526 4 C 0.153 3.847 5 C -0.233 4.233 6 C 0.184 3.816 7 C -0.056 4.056 8 C -0.131 4.131 9 C 0.513 3.487 10 O -0.540 6.540 11 N -0.729 5.729 12 C 0.121 3.879 13 C 0.044 3.956 14 N -0.531 5.531 15 C 0.037 3.963 16 C 0.151 3.849 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.022 3.978 21 N -0.910 5.910 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.269 1.269 26 C 0.130 3.870 27 C 0.045 3.955 28 N -0.518 5.518 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.066 0.934 47 H 0.262 0.738 48 H 0.033 0.967 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 33.455 -6.794 34.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.241 5.241 4 C -0.012 4.012 5 C -0.254 4.254 6 C 0.038 3.962 7 C -0.095 4.095 8 C -0.172 4.172 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.381 5.381 12 C -0.003 4.003 13 C -0.085 4.085 14 N -0.256 5.256 15 C -0.092 4.092 16 C 0.025 3.975 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.004 3.996 27 C -0.084 4.084 28 N -0.233 5.233 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.054 33.165 -7.363 34.508 hybrid contribution 0.590 0.226 1.179 1.338 sum -5.465 33.391 -6.184 34.396 Atomic orbital electron populations 1.20591 0.85593 1.04305 1.04014 1.23309 0.98260 0.83296 0.89857 1.68281 1.10238 1.30533 1.15086 1.23265 0.89668 0.98715 0.89575 1.22810 1.03144 0.94120 1.05369 1.21746 0.89588 0.95876 0.89027 1.20360 0.99394 0.89723 0.99987 1.21540 1.02387 0.93230 1.00021 1.20549 0.82745 0.85622 0.81125 1.90735 1.34462 1.79348 1.37095 1.45967 1.44044 1.17360 1.30754 1.21380 0.97411 0.82465 0.99035 1.22209 0.96253 0.91900 0.98094 1.61844 1.57065 1.03137 1.03597 1.22746 0.98643 0.95789 0.92006 1.21010 0.96500 0.90966 0.89002 1.44412 1.83094 1.06186 0.99563 1.18938 1.29221 0.82319 1.08266 0.89666 1.25262 0.98719 0.95470 0.98255 1.69842 1.41158 1.14542 1.29732 0.86946 0.84535 0.76851 0.80216 1.21673 1.23164 1.19437 1.21434 0.96541 0.90892 0.90770 1.22649 0.99314 0.96038 0.90411 1.68091 1.09557 1.30606 1.15039 0.89498 0.89585 0.89473 0.81367 0.83302 0.88292 0.88762 0.88989 0.87648 0.76653 0.91105 0.90446 0.90633 0.94630 0.94762 0.91207 0.95063 0.91575 0.92792 0.94889 0.90666 0.91585 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.32 36.01 0.37 -0.09 16 2 C 0.32 2.65 7.64 -157.20 -1.20 1.45 16 3 N -0.53 -4.41 10.33 -10.72 -0.11 -4.52 16 4 C 0.15 0.95 11.31 -17.20 -0.19 0.76 16 5 C -0.23 -1.39 9.80 -39.32 -0.39 -1.77 16 6 C 0.18 1.39 6.20 -82.25 -0.51 0.88 16 7 C -0.06 -0.40 4.94 -27.89 -0.14 -0.54 16 8 C -0.13 -0.89 5.57 -27.89 -0.16 -1.04 16 9 C 0.51 5.11 7.83 -10.99 -0.09 5.02 16 10 O -0.54 -7.55 15.98 5.56 0.09 -7.46 16 11 N -0.73 -6.47 5.56 -60.29 -0.33 -6.81 16 12 C 0.12 1.37 5.61 -4.04 -0.02 1.35 16 13 C 0.04 0.52 5.08 -3.82 -0.02 0.50 16 14 N -0.53 -8.41 4.63 -234.32 -1.08 -9.50 16 15 C 0.04 0.62 5.46 -3.71 -0.02 0.60 16 16 C 0.15 3.03 6.69 -3.61 -0.02 3.00 16 17 N -0.61 -14.60 2.82 -172.01 -0.48 -15.08 16 18 C -0.26 -7.28 10.08 -15.06 -0.15 -7.43 16 19 H 0.09 2.55 8.05 -52.48 -0.42 2.12 16 20 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 21 N -0.91 -27.91 13.97 55.49 0.78 -27.13 16 22 Si 0.88 22.45 24.31 -169.99 -4.13 18.32 16 23 H -0.29 -7.00 6.58 56.52 0.37 -6.63 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.27 -6.81 6.61 56.52 0.37 -6.43 16 26 C 0.13 2.84 4.35 -3.60 -0.02 2.82 16 27 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 28 N -0.52 -4.53 9.94 -6.99 -0.07 -4.60 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.15 0.51 8.01 -52.49 -0.42 0.09 16 34 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 36 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.11 0.67 7.98 -51.93 -0.41 0.26 16 38 H 0.40 2.42 8.47 -40.82 -0.35 2.08 16 39 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 42 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.30 7.95 -51.93 -0.41 0.88 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.03 0.74 6.94 -51.92 -0.36 0.38 16 49 H 0.08 1.78 4.61 -51.93 -0.24 1.54 16 50 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 51 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -35.42 405.73 -10.25 -45.67 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.35 Total: -1.82 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -2.66 Total: 6.82 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -1.31 Total: -67.65 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.13 Total: 18.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.42 -10.25 -45.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713076016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.303 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds