Wall clock time and date at job start Wed Apr 1 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31807 * 119.12089 * 2 1 4 4 C 1.32326 * 120.81625 * 179.72591 * 3 2 1 5 5 C 1.38625 * 119.09900 * 0.57509 * 4 3 2 6 6 C 1.38570 * 118.40151 * 359.44150 * 5 4 3 7 7 C 1.50697 * 120.44898 * 180.29900 * 6 5 4 8 8 C 1.52996 * 109.47473 * 124.99742 * 7 6 5 9 9 C 1.50697 * 109.47473 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99812 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99955 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99688 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46887 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47027 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00113 * 294.29885 * 14 13 12 16 16 C 1.53234 * 109.34240 * 172.74907 * 15 14 13 17 17 N 1.47077 * 108.52533 * 53.82954 * 16 15 14 18 18 C 1.36933 * 120.88242 * 128.83889 * 17 16 15 19 19 H 1.08003 * 119.99847 * 333.49076 * 18 17 16 20 20 C 1.38810 * 119.99999 * 153.49228 * 18 17 16 21 21 N 1.31622 * 119.99653 * 159.44213 * 20 18 17 22 22 Si 1.86793 * 120.00104 * 339.43879 * 20 18 17 23 23 H 1.48495 * 109.47258 * 91.97734 * 22 20 18 24 24 H 1.48501 * 109.47453 * 211.98064 * 22 20 18 25 25 H 1.48505 * 109.47247 * 331.97848 * 22 20 18 26 26 C 1.47080 * 118.23674 * 308.82092 * 17 16 15 27 27 C 1.46905 * 111.00083 * 169.99916 * 14 13 12 28 28 N 1.31778 * 119.12296 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47191 * 269.97528 * 1 2 3 30 30 H 1.09001 * 109.47146 * 29.97690 * 1 2 3 31 31 H 1.09001 * 109.47191 * 149.97937 * 1 2 3 32 32 H 1.07998 * 120.44515 * 180.31550 * 4 3 2 33 33 H 1.07996 * 120.79378 * 179.71484 * 5 4 3 34 34 H 1.08998 * 109.47205 * 244.99870 * 7 6 5 35 35 H 1.09000 * 109.47167 * 4.99786 * 7 6 5 36 36 H 1.09008 * 109.47244 * 300.00756 * 8 7 6 37 37 H 1.09000 * 109.46888 * 59.99873 * 8 7 6 38 38 H 0.97000 * 120.00393 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.47147 * 299.99863 * 12 11 9 40 40 H 1.09003 * 109.47389 * 60.00472 * 12 11 9 41 41 H 1.09004 * 109.47662 * 299.99705 * 13 12 11 42 42 H 1.08996 * 109.47644 * 60.00234 * 13 12 11 43 43 H 1.09002 * 109.49587 * 292.71337 * 15 14 13 44 44 H 1.09005 * 109.49060 * 52.78307 * 15 14 13 45 45 H 1.09006 * 109.62881 * 294.11988 * 16 15 14 46 46 H 1.09003 * 109.62918 * 173.54369 * 16 15 14 47 47 H 0.97005 * 119.99214 * 179.97438 * 21 20 18 48 48 H 1.09008 * 109.62512 * 291.47085 * 26 17 16 49 49 H 1.09000 * 109.79032 * 170.98708 * 26 17 16 50 50 H 1.09004 * 109.49297 * 307.21079 * 27 14 13 51 51 H 1.08998 * 109.49237 * 67.29364 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 0.0054 5 6 4.1809 -0.0002 -0.0010 6 6 3.4713 -1.1904 -0.0010 7 6 4.1961 -2.5116 -0.0011 8 6 3.7162 -3.3568 1.1805 9 6 4.4415 -4.6777 1.1808 10 8 5.2619 -4.9192 0.3208 11 7 4.1784 -5.5907 2.1366 12 6 4.8839 -6.8747 2.1372 13 6 4.4029 -7.7203 3.3180 14 7 5.1108 -9.0075 3.3190 15 6 4.7527 -9.8061 2.1392 16 6 5.6412 -11.0533 2.0818 17 7 5.5366 -11.7610 3.3668 18 6 5.2509 -13.0995 3.4108 19 1 4.6953 -13.5598 2.6072 20 6 5.6755 -13.8648 4.4883 21 7 5.0887 -15.0131 4.7517 22 14 7.0796 -13.2649 5.5644 23 1 6.5319 -12.4876 6.7050 24 1 7.8411 -14.4308 6.0801 25 1 7.9822 -12.3993 4.7634 26 6 5.7474 -10.9931 4.6034 27 6 4.8547 -9.7483 4.5615 28 7 2.1484 -1.1512 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9906 2.1375 0.0105 33 1 5.2609 -0.0001 -0.0014 34 1 3.9901 -3.0390 -0.9325 35 1 5.2685 -2.3378 0.0884 36 1 3.9221 -2.8293 2.1120 37 1 2.6439 -3.5306 1.0910 38 1 3.5219 -5.3977 2.8242 39 1 4.6791 -7.4022 1.2057 40 1 5.9561 -6.7001 2.2278 41 1 4.6074 -7.1930 4.2499 42 1 3.3308 -7.8950 3.2271 43 1 3.7073 -10.1071 2.2072 44 1 4.9023 -9.2111 1.2382 45 1 6.6762 -10.7579 1.9097 46 1 5.3048 -11.7057 1.2760 47 1 5.3857 -15.5480 5.5045 48 1 6.7926 -10.6919 4.6736 49 1 5.4836 -11.6040 5.4667 50 1 5.0783 -9.1113 5.4173 51 1 3.8079 -10.0501 4.5958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713076016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:13 Heat of formation + Delta-G solvation = 14.944749 kcal Electronic energy + Delta-G solvation = -29146.877634 eV Core-core repulsion = 25080.971658 eV Total energy + Delta-G solvation = -4065.905976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08662 -40.80945 -39.89025 -37.04119 -36.11224 -35.40120 -34.35947 -33.63639 -32.64247 -32.04658 -30.49485 -29.43525 -27.94465 -26.49745 -25.23783 -24.31890 -23.99108 -22.99039 -22.57391 -21.39044 -20.97816 -18.84494 -18.61723 -18.23727 -17.36096 -17.18370 -16.98298 -16.83706 -16.31551 -16.09643 -16.08409 -15.90040 -15.68646 -15.55873 -15.41475 -14.78255 -14.69995 -14.44503 -14.27722 -14.05781 -13.84970 -13.65241 -13.54310 -13.39966 -13.21403 -13.07529 -12.97948 -12.57909 -12.51474 -12.28844 -12.20365 -12.09635 -11.80793 -11.77371 -11.65132 -11.54963 -11.44413 -10.96345 -10.72951 -10.34010 -10.22709 -10.08123 -9.41667 -8.91431 -8.17553 -5.49283 -0.08322 0.07931 1.29167 1.42478 1.52117 1.64033 2.05336 2.41061 2.72593 2.90210 2.99023 3.08345 3.16920 3.34801 3.50471 3.74678 3.84324 4.03991 4.07356 4.13395 4.13788 4.18479 4.21578 4.23801 4.42653 4.44805 4.48761 4.50244 4.56816 4.60051 4.64150 4.69721 4.71773 4.79282 4.84620 4.89774 4.94991 4.97316 5.00802 5.04162 5.08476 5.09292 5.27385 5.40984 5.49952 5.81374 6.04013 6.06101 6.06684 6.17180 6.54464 6.88648 7.12003 7.25307 7.59883 8.02306 9.02315 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.001456 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.510110 B =19229.898759 C =19414.791521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.547 5.547 4 C 0.148 3.852 5 C -0.229 4.229 6 C 0.170 3.830 7 C -0.052 4.052 8 C -0.119 4.119 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.717 5.717 12 C 0.130 3.870 13 C 0.052 3.948 14 N -0.539 5.539 15 C 0.050 3.950 16 C 0.145 3.855 17 N -0.623 5.623 18 C -0.251 4.251 19 H 0.051 0.949 20 C -0.035 4.035 21 N -0.957 5.957 22 Si 0.950 3.050 23 H -0.268 1.268 24 H -0.311 1.311 25 H -0.266 1.266 26 C 0.122 3.878 27 C 0.056 3.944 28 N -0.536 5.536 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.199 0.801 33 H 0.175 0.825 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.025 0.975 44 H 0.094 0.906 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.262 0.738 48 H 0.034 0.966 49 H 0.055 0.945 50 H 0.100 0.900 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 36.993 -5.776 37.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.263 5.263 4 C -0.018 4.018 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.090 4.090 8 C -0.159 4.159 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.370 5.370 12 C 0.005 3.995 13 C -0.076 4.076 14 N -0.264 5.264 15 C -0.079 4.079 16 C 0.020 3.980 17 N -0.348 5.348 18 C -0.381 4.381 19 H 0.069 0.931 20 C -0.230 4.230 21 N -0.603 5.603 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.240 1.240 25 H -0.191 1.191 26 C -0.003 4.003 27 C -0.073 4.073 28 N -0.252 5.252 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.216 0.784 33 H 0.192 0.808 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.112 0.888 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.118 0.882 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.752 36.769 -6.330 37.751 hybrid contribution 0.466 -0.819 0.754 1.207 sum -5.286 35.949 -5.577 36.762 Atomic orbital electron populations 1.20651 0.84211 1.04671 1.04736 1.23773 0.99384 0.83307 0.90061 1.68332 1.11431 1.30681 1.15829 1.23841 0.89215 1.00168 0.88530 1.23097 1.04428 0.93387 1.04134 1.21879 0.89551 0.96502 0.89599 1.20296 0.99728 0.89607 0.99405 1.21483 1.02079 0.91443 1.00898 1.21069 0.82080 0.86440 0.80313 1.90721 1.36544 1.80280 1.38819 1.45821 1.43913 1.16275 1.31004 1.21119 0.96862 0.83318 0.98166 1.22210 0.96344 0.89741 0.99299 1.61767 1.58142 1.04130 1.02406 1.22535 0.97002 0.94677 0.93699 1.21174 0.97500 0.92136 0.87201 1.44545 1.83369 1.05082 1.01840 1.18881 1.27807 0.84462 1.06923 0.93087 1.25884 1.00960 0.95849 1.00266 1.69971 1.42906 1.16363 1.31086 0.85880 0.81021 0.76146 0.79098 1.19466 1.23972 1.19114 1.21485 0.97540 0.92259 0.88995 1.22443 0.97540 0.94864 0.92478 1.68090 1.10268 1.31019 1.15860 0.88522 0.89036 0.89239 0.78382 0.80764 0.89920 0.88186 0.86798 0.87031 0.74665 0.92612 0.91833 0.88283 0.93568 0.95661 0.88807 0.94729 0.92211 0.92915 0.94764 0.92642 0.88204 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.32 71.24 0.74 -0.09 16 2 C 0.30 4.72 7.64 138.75 1.06 5.78 16 3 N -0.55 -8.47 10.33 -187.83 -1.94 -10.41 16 4 C 0.15 1.53 11.31 84.71 0.96 2.49 16 5 C -0.23 -2.24 9.80 22.44 0.22 -2.02 16 6 C 0.17 2.32 6.20 42.56 0.26 2.59 16 7 C -0.05 -0.67 4.94 29.85 0.15 -0.53 16 8 C -0.12 -1.35 5.57 29.85 0.17 -1.18 16 9 C 0.51 9.22 7.83 87.66 0.69 9.90 16 10 O -0.58 -15.80 15.98 -3.04 -0.05 -15.85 16 11 N -0.72 -10.71 5.56 -463.06 -2.57 -13.28 16 12 C 0.13 2.61 5.61 86.38 0.48 3.10 16 13 C 0.05 1.03 5.08 86.30 0.44 1.47 16 14 N -0.54 -15.50 4.63 -895.25 -4.15 -19.65 16 15 C 0.05 1.57 5.46 86.38 0.47 2.04 16 16 C 0.14 5.73 6.69 86.35 0.58 6.31 16 17 N -0.62 -29.81 2.82 -698.13 -1.97 -31.78 16 18 C -0.25 -14.47 10.08 84.03 0.85 -13.62 16 19 H 0.05 3.21 8.05 -2.91 -0.02 3.19 16 20 C -0.03 -2.05 5.24 84.86 0.44 -1.61 16 21 N -0.96 -60.45 13.97 21.65 0.30 -60.15 16 22 Si 0.95 46.86 24.31 68.60 1.67 48.53 16 23 H -0.27 -12.22 6.58 99.48 0.65 -11.57 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 25 H -0.27 -12.85 6.61 99.48 0.66 -12.19 16 26 C 0.12 5.15 4.35 86.35 0.38 5.53 16 27 C 0.06 1.80 5.62 86.38 0.49 2.29 16 28 N -0.54 -8.83 9.94 -176.03 -1.75 -10.58 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.17 0.68 8.01 -2.91 -0.02 0.66 16 34 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.10 1.15 7.90 -2.39 -0.02 1.13 16 36 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.11 1.18 7.98 -2.39 -0.02 1.16 16 38 H 0.42 3.50 8.47 -92.71 -0.79 2.72 16 39 H 0.06 1.31 6.40 -2.39 -0.02 1.29 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.57 7.97 -2.38 -0.02 1.55 16 42 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 43 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 2.52 6.16 -2.38 -0.01 2.51 16 45 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 47 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 48 H 0.03 1.45 6.94 -2.38 -0.02 1.43 16 49 H 0.06 2.55 4.61 -2.39 -0.01 2.53 16 50 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -78.97 405.73 -2.05 -81.01 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.05 Total: 9.70 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 8.36 Total: 22.46 kcal Atomic # 7 Polarization: -133.77 SS G_CDS: -12.07 Total: -145.85 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -78.97 -2.05 -81.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713076016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.958 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds