Wall clock time and date at job start Wed Apr 1 2020 04:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31890 * 118.95327 * 2 1 4 4 C 1.32127 * 120.96163 * 179.68311 * 3 2 1 5 5 C 1.39972 * 118.92794 * 0.61397 * 4 3 2 6 6 C 1.47831 * 120.93724 * 179.69506 * 5 4 3 7 7 O 1.21559 * 119.99722 * 174.78172 * 6 5 4 8 8 N 1.34775 * 120.00555 * 354.78570 * 6 5 4 9 9 C 1.46497 * 119.99959 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46893 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47215 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.46893 * 111.00067 * 169.99690 * 12 11 10 14 14 C 1.53239 * 109.34437 * 187.25688 * 13 12 11 15 15 N 1.47088 * 108.51650 * 306.17410 * 14 13 12 16 16 C 1.36937 * 120.87715 * 231.18231 * 15 14 13 17 17 H 1.07996 * 119.99896 * 30.79878 * 16 15 14 18 18 C 1.38809 * 119.99722 * 210.51904 * 16 15 14 19 19 N 1.31623 * 120.00173 * 18.47291 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 198.47050 * 18 16 15 21 21 H 1.48501 * 109.47242 * 89.99770 * 20 18 16 22 22 H 1.48499 * 109.47151 * 210.00255 * 20 18 16 23 23 H 1.48499 * 109.47063 * 329.99966 * 20 18 16 24 24 C 1.47079 * 118.23752 * 51.45599 * 15 14 13 25 25 C 1.46895 * 111.00119 * 294.30400 * 12 11 10 26 26 C 1.39923 * 118.11761 * 359.42584 * 5 4 3 27 27 C 1.50703 * 120.53744 * 180.24919 * 26 5 4 28 28 N 1.31854 * 118.95114 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46664 * 269.97402 * 1 2 3 30 30 H 1.08998 * 109.47163 * 29.96819 * 1 2 3 31 31 H 1.08999 * 109.47321 * 149.97561 * 1 2 3 32 32 H 1.08007 * 120.53454 * 180.31297 * 4 3 2 33 33 H 0.97004 * 119.99398 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47480 * 59.99883 * 9 8 6 35 35 H 1.08996 * 109.47367 * 299.99291 * 9 8 6 36 36 H 1.08995 * 109.47318 * 59.99355 * 10 9 8 37 37 H 1.09006 * 109.46836 * 299.99971 * 10 9 8 38 38 H 1.09005 * 109.47025 * 59.99901 * 11 10 9 39 39 H 1.08993 * 109.46767 * 300.00178 * 11 10 9 40 40 H 1.09002 * 109.49162 * 67.29555 * 13 12 11 41 41 H 1.08997 * 109.51588 * 307.23401 * 13 12 11 42 42 H 1.08998 * 109.63337 * 186.46394 * 14 13 12 43 43 H 1.08993 * 109.62718 * 65.87808 * 14 13 12 44 44 H 0.96995 * 119.99965 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.62843 * 68.25278 * 24 15 14 46 46 H 1.09002 * 109.62620 * 188.83035 * 24 15 14 47 47 H 1.09000 * 109.49398 * 292.70304 * 25 12 11 48 48 H 1.09001 * 109.49638 * 52.78586 * 25 12 11 49 49 H 1.09003 * 109.46628 * 83.12439 * 27 26 5 50 50 H 1.08994 * 109.47273 * 203.12657 * 27 26 5 51 51 H 1.09003 * 109.46818 * 323.12734 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1541 0.0000 4 6 3.4659 1.2004 0.0063 5 6 4.1855 -0.0002 -0.0002 6 6 5.6638 -0.0001 -0.0003 7 8 6.2716 -1.0490 0.0898 8 7 6.3378 1.1627 -0.1003 9 6 7.8028 1.1625 -0.1010 10 6 8.3128 2.5997 -0.2251 11 6 9.8428 2.5997 -0.2252 12 7 10.3325 3.9795 -0.3449 13 6 11.7813 4.0460 -0.1116 14 6 12.2212 5.5132 -0.0654 15 7 11.7575 6.1787 -1.2924 16 6 12.6212 6.9069 -2.0663 17 1 13.6647 6.6329 -2.1148 18 6 12.1544 7.9936 -2.7928 19 7 11.0041 8.5506 -2.4779 20 14 13.1585 8.6656 -4.2174 21 1 12.7639 7.9741 -5.4709 22 1 12.9079 10.1228 -4.3558 23 1 14.6022 8.4342 -3.9579 24 6 10.3402 6.0465 -1.6627 25 6 9.9758 4.5534 -1.6492 26 6 3.4661 -1.2003 -0.0006 27 6 4.1856 -2.5244 -0.0018 28 7 2.1452 -1.1538 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 3.9817 2.1493 0.0113 33 1 5.8527 1.9997 -0.1725 34 1 8.1657 0.5746 -0.9440 35 1 8.1665 0.7267 0.8294 36 1 7.9499 3.1881 0.6176 37 1 7.9490 3.0353 -1.1557 38 1 10.2061 2.0112 -1.0677 39 1 10.2061 2.1643 0.7056 40 1 12.3037 3.5349 -0.9204 41 1 12.0199 3.5647 0.8367 42 1 13.3082 5.5679 -0.0076 43 1 11.7804 6.0003 0.8043 44 1 10.6781 9.3102 -2.9854 45 1 9.7222 6.5839 -0.9435 46 1 10.1832 6.4540 -2.6614 47 1 10.5234 4.0354 -2.4365 48 1 8.9046 4.4403 -1.8157 49 1 4.4675 -2.7855 1.0183 50 1 3.5286 -3.2946 -0.4056 51 1 5.0812 -2.4507 -0.6188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713802788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:36 Heat of formation + Delta-G solvation = 39.273838 kcal Electronic energy + Delta-G solvation = -29571.799316 eV Core-core repulsion = 25506.948328 eV Total energy + Delta-G solvation = -4064.850987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.80977 -39.77090 -38.30190 -36.11053 -34.93713 -34.41249 -33.95899 -32.11306 -30.66703 -29.96438 -29.63583 -28.90189 -26.81178 -24.79067 -24.28846 -23.10669 -22.73077 -22.33914 -21.39810 -20.76286 -19.14180 -18.40424 -18.07346 -16.82777 -16.41691 -16.29224 -16.06513 -15.71691 -15.23390 -14.81324 -14.66038 -14.31012 -14.19077 -14.01258 -13.79563 -13.60454 -13.49401 -13.44950 -13.06921 -12.99675 -12.86359 -12.83063 -12.62676 -12.19526 -12.03835 -11.89324 -11.61985 -11.34038 -11.10621 -11.03721 -10.92238 -10.76760 -10.43419 -10.31930 -10.12058 -10.07429 -9.95213 -9.77817 -9.77331 -9.59621 -9.39159 -8.51910 -7.87105 -6.64412 -5.81201 -3.24760 -0.04827 0.54608 2.40598 2.66410 3.26370 3.34817 3.35864 3.43136 3.44269 3.51309 3.86281 4.18768 4.25942 4.40945 4.48429 4.62036 4.84528 4.89474 4.99188 5.04060 5.10374 5.14921 5.30339 5.33066 5.35090 5.40619 5.43220 5.44847 5.53402 5.65731 5.69093 5.85263 5.90958 5.91565 5.99675 6.07444 6.13267 6.15352 6.20750 6.31248 6.43390 6.52240 6.65813 6.92282 7.03250 7.17629 7.54051 7.55186 7.58608 7.66542 7.74615 7.80417 8.43241 9.18932 9.81840 10.43035 11.27427 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.001689 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.012987 B =16578.237262 C =17607.497803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.341 3.659 3 N -0.526 5.526 4 C 0.192 3.808 5 C -0.257 4.257 6 C 0.570 3.430 7 O -0.527 6.527 8 N -0.721 5.721 9 C 0.122 3.878 10 C -0.130 4.130 11 C 0.059 3.941 12 N -0.533 5.533 13 C 0.045 3.955 14 C 0.148 3.852 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.181 3.819 25 C 0.033 3.967 26 C 0.240 3.760 27 C -0.112 4.112 28 N -0.526 5.526 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.254 0.746 45 H 0.028 0.972 46 H 0.078 0.922 47 H 0.025 0.975 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.076 0.924 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.786 -19.162 6.062 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 N -0.241 5.241 4 C 0.025 3.975 5 C -0.265 4.265 6 C 0.355 3.645 7 O -0.405 6.405 8 N -0.372 5.372 9 C -0.002 4.002 10 C -0.168 4.168 11 C -0.070 4.070 12 N -0.258 5.258 13 C -0.084 4.084 14 C 0.021 3.979 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.055 3.945 25 C -0.096 4.096 26 C 0.094 3.906 27 C -0.169 4.169 28 N -0.241 5.241 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.236 0.764 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.095 0.905 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.610 -19.465 6.401 27.680 hybrid contribution 1.526 0.529 -1.397 2.136 sum -17.084 -18.936 5.004 25.990 Atomic orbital electron populations 1.20671 0.85155 1.04646 1.04317 1.23578 0.98574 0.83289 0.86974 1.68324 1.09604 1.30099 1.16066 1.23504 0.89775 0.97638 0.86601 1.21571 0.95957 0.96491 1.12433 1.17705 0.85852 0.84117 0.76792 1.90755 1.69526 1.30665 1.49505 1.45917 1.08168 1.08654 1.74490 1.21418 0.77972 0.98099 1.02687 1.21821 0.96705 0.94564 1.03697 1.21929 0.93614 0.90875 1.00603 1.61931 1.14514 1.16686 1.32648 1.22615 0.86835 1.00052 0.98927 1.20993 0.97148 0.89519 0.90202 1.44093 1.06313 1.58437 1.22877 1.19149 0.92106 1.06257 1.21138 0.91845 1.25100 0.97638 0.95701 1.00918 1.70054 1.21545 1.22987 1.39691 0.86324 0.79857 0.77871 0.82912 1.21459 1.21726 1.20389 1.20861 0.84760 0.88398 1.00514 1.23021 0.98727 0.99909 0.87987 1.22025 0.88774 0.95729 0.84091 1.21110 1.00538 0.90425 1.04842 1.68295 1.09155 1.30121 1.16545 0.89071 0.89127 0.89236 0.80997 0.76435 0.91174 0.90979 0.90239 0.90901 0.95275 0.91113 0.95444 0.92015 0.92593 0.95672 0.93614 0.95378 0.90368 0.95697 0.92029 0.89025 0.90516 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.31 36.01 0.37 -0.12 16 2 C 0.34 3.11 7.64 -157.06 -1.20 1.91 16 3 N -0.53 -4.97 10.32 -10.39 -0.11 -5.07 16 4 C 0.19 1.57 10.80 -16.78 -0.18 1.39 16 5 C -0.26 -2.40 5.91 -104.69 -0.62 -3.02 16 6 C 0.57 5.72 7.74 -12.34 -0.10 5.63 16 7 O -0.53 -6.59 13.52 5.31 0.07 -6.51 16 8 N -0.72 -5.96 5.51 -61.25 -0.34 -6.30 16 9 C 0.12 1.11 5.67 -4.04 -0.02 1.09 16 10 C -0.13 -1.31 5.26 -26.73 -0.14 -1.45 16 11 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 12 N -0.53 -8.88 4.63 -234.04 -1.08 -9.96 16 13 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 14 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16 15 N -0.59 -14.88 3.01 -171.73 -0.52 -15.40 16 16 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.01 0.16 4.86 -17.43 -0.08 0.07 16 19 N -0.90 -25.96 11.53 55.49 0.64 -25.32 16 20 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.18 4.25 5.43 -3.36 -0.02 4.23 16 25 C 0.03 0.60 5.48 -3.47 -0.02 0.58 16 26 C 0.24 2.39 6.86 -81.82 -0.56 1.83 16 27 C -0.11 -0.96 8.98 36.01 0.32 -0.64 16 28 N -0.53 -5.29 10.26 -6.67 -0.07 -5.36 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 0.86 6.57 -52.48 -0.34 0.51 16 33 H 0.40 2.40 6.64 -40.82 -0.27 2.13 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 38 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 42 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 2.03 6.46 -51.93 -0.34 1.70 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.99 6.16 -51.93 -0.32 0.67 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 1.03 5.96 -51.93 -0.31 0.72 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -32.97 405.62 -10.97 -43.94 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.20 Total: -1.54 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.46 Total: 8.91 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -1.47 Total: -67.41 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.07 Total: -6.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.97 -10.97 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713802788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.215 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds