Wall clock time and date at job start Wed Apr 1 2020 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31890 * 118.95327 * 2 1 4 4 C 1.32127 * 120.96163 * 179.68311 * 3 2 1 5 5 C 1.39972 * 118.92794 * 0.61397 * 4 3 2 6 6 C 1.47831 * 120.93724 * 179.69506 * 5 4 3 7 7 O 1.21559 * 119.99722 * 174.78172 * 6 5 4 8 8 N 1.34775 * 120.00555 * 354.78570 * 6 5 4 9 9 C 1.46497 * 119.99959 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46893 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47215 * 179.97438 * 10 9 8 12 12 N 1.46897 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.46893 * 111.00067 * 169.99690 * 12 11 10 14 14 C 1.53239 * 109.34437 * 187.25688 * 13 12 11 15 15 N 1.47088 * 108.51650 * 306.17410 * 14 13 12 16 16 C 1.36937 * 120.87715 * 231.18231 * 15 14 13 17 17 H 1.07996 * 119.99896 * 30.79878 * 16 15 14 18 18 C 1.38809 * 119.99722 * 210.51904 * 16 15 14 19 19 N 1.31623 * 120.00173 * 18.47291 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 198.47050 * 18 16 15 21 21 H 1.48501 * 109.47242 * 89.99770 * 20 18 16 22 22 H 1.48499 * 109.47151 * 210.00255 * 20 18 16 23 23 H 1.48499 * 109.47063 * 329.99966 * 20 18 16 24 24 C 1.47079 * 118.23752 * 51.45599 * 15 14 13 25 25 C 1.46895 * 111.00119 * 294.30400 * 12 11 10 26 26 C 1.39923 * 118.11761 * 359.42584 * 5 4 3 27 27 C 1.50703 * 120.53744 * 180.24919 * 26 5 4 28 28 N 1.31854 * 118.95114 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46664 * 269.97402 * 1 2 3 30 30 H 1.08998 * 109.47163 * 29.96819 * 1 2 3 31 31 H 1.08999 * 109.47321 * 149.97561 * 1 2 3 32 32 H 1.08007 * 120.53454 * 180.31297 * 4 3 2 33 33 H 0.97004 * 119.99398 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47480 * 59.99883 * 9 8 6 35 35 H 1.08996 * 109.47367 * 299.99291 * 9 8 6 36 36 H 1.08995 * 109.47318 * 59.99355 * 10 9 8 37 37 H 1.09006 * 109.46836 * 299.99971 * 10 9 8 38 38 H 1.09005 * 109.47025 * 59.99901 * 11 10 9 39 39 H 1.08993 * 109.46767 * 300.00178 * 11 10 9 40 40 H 1.09002 * 109.49162 * 67.29555 * 13 12 11 41 41 H 1.08997 * 109.51588 * 307.23401 * 13 12 11 42 42 H 1.08998 * 109.63337 * 186.46394 * 14 13 12 43 43 H 1.08993 * 109.62718 * 65.87808 * 14 13 12 44 44 H 0.96995 * 119.99965 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.62843 * 68.25278 * 24 15 14 46 46 H 1.09002 * 109.62620 * 188.83035 * 24 15 14 47 47 H 1.09000 * 109.49398 * 292.70304 * 25 12 11 48 48 H 1.09001 * 109.49638 * 52.78586 * 25 12 11 49 49 H 1.09003 * 109.46628 * 83.12439 * 27 26 5 50 50 H 1.08994 * 109.47273 * 203.12657 * 27 26 5 51 51 H 1.09003 * 109.46818 * 323.12734 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1541 0.0000 4 6 3.4659 1.2004 0.0063 5 6 4.1855 -0.0002 -0.0002 6 6 5.6638 -0.0001 -0.0003 7 8 6.2716 -1.0490 0.0898 8 7 6.3378 1.1627 -0.1003 9 6 7.8028 1.1625 -0.1010 10 6 8.3128 2.5997 -0.2251 11 6 9.8428 2.5997 -0.2252 12 7 10.3325 3.9795 -0.3449 13 6 11.7813 4.0460 -0.1116 14 6 12.2212 5.5132 -0.0654 15 7 11.7575 6.1787 -1.2924 16 6 12.6212 6.9069 -2.0663 17 1 13.6647 6.6329 -2.1148 18 6 12.1544 7.9936 -2.7928 19 7 11.0041 8.5506 -2.4779 20 14 13.1585 8.6656 -4.2174 21 1 12.7639 7.9741 -5.4709 22 1 12.9079 10.1228 -4.3558 23 1 14.6022 8.4342 -3.9579 24 6 10.3402 6.0465 -1.6627 25 6 9.9758 4.5534 -1.6492 26 6 3.4661 -1.2003 -0.0006 27 6 4.1856 -2.5244 -0.0018 28 7 2.1452 -1.1538 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 3.9817 2.1493 0.0113 33 1 5.8527 1.9997 -0.1725 34 1 8.1657 0.5746 -0.9440 35 1 8.1665 0.7267 0.8294 36 1 7.9499 3.1881 0.6176 37 1 7.9490 3.0353 -1.1557 38 1 10.2061 2.0112 -1.0677 39 1 10.2061 2.1643 0.7056 40 1 12.3037 3.5349 -0.9204 41 1 12.0199 3.5647 0.8367 42 1 13.3082 5.5679 -0.0076 43 1 11.7804 6.0003 0.8043 44 1 10.6781 9.3102 -2.9854 45 1 9.7222 6.5839 -0.9435 46 1 10.1832 6.4540 -2.6614 47 1 10.5234 4.0354 -2.4365 48 1 8.9046 4.4403 -1.8157 49 1 4.4675 -2.7855 1.0183 50 1 3.5286 -3.2946 -0.4056 51 1 5.0812 -2.4507 -0.6188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713802788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:35 Heat of formation + Delta-G solvation = 16.529392 kcal Electronic energy + Delta-G solvation = -29572.785589 eV Core-core repulsion = 25506.948328 eV Total energy + Delta-G solvation = -4065.837261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.48132 -40.54162 -39.72666 -37.14526 -36.06570 -35.39060 -34.68933 -33.61381 -32.03495 -31.61757 -30.21215 -29.70344 -28.29613 -26.01809 -25.06802 -24.50992 -24.13951 -23.31374 -22.26355 -21.70051 -20.81280 -19.09700 -18.82235 -18.66386 -17.16736 -17.07312 -16.95657 -16.73305 -16.48254 -16.17437 -15.81929 -15.40662 -15.35296 -15.24328 -15.21014 -14.77034 -14.61539 -14.50240 -14.18477 -14.09556 -13.41316 -13.37549 -13.34383 -13.28284 -13.17378 -12.95461 -12.79664 -12.73854 -12.62523 -12.51791 -12.29961 -12.07539 -11.94750 -11.78082 -11.71380 -11.46670 -11.29568 -10.86902 -10.64540 -10.58913 -10.45729 -10.10962 -9.23855 -8.63882 -7.89038 -5.36207 -0.72216 -0.12567 1.45820 1.47015 1.56088 1.66825 1.93773 2.49887 2.58617 2.77856 2.89503 3.02185 3.23997 3.25601 3.54416 3.70062 3.74770 3.96733 4.03121 4.11339 4.19154 4.33749 4.37060 4.39725 4.50463 4.61729 4.63653 4.65273 4.67212 4.68512 4.69101 4.72208 4.79816 4.83638 4.89176 4.91380 5.04048 5.09872 5.17781 5.23582 5.26440 5.33503 5.35106 5.40198 5.62902 5.65932 5.77281 6.20585 6.31378 6.36765 6.38664 6.87775 7.03352 7.13461 7.83421 8.39716 9.17133 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.001689 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.012987 B =16578.237262 C =17607.497803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.331 3.669 3 N -0.541 5.541 4 C 0.197 3.803 5 C -0.266 4.266 6 C 0.571 3.429 7 O -0.555 6.555 8 N -0.710 5.710 9 C 0.131 3.869 10 C -0.118 4.118 11 C 0.059 3.941 12 N -0.541 5.541 13 C 0.056 3.944 14 C 0.142 3.858 15 N -0.614 5.614 16 C -0.269 4.269 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.269 1.269 24 C 0.187 3.813 25 C 0.050 3.950 26 C 0.226 3.774 27 C -0.106 4.106 28 N -0.541 5.541 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.202 0.798 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.088 0.912 40 H 0.022 0.978 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.251 0.749 45 H 0.002 0.998 46 H 0.045 0.955 47 H 0.016 0.984 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.085 0.915 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 -20.205 6.367 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 N -0.256 5.256 4 C 0.029 3.971 5 C -0.274 4.274 6 C 0.358 3.642 7 O -0.435 6.435 8 N -0.362 5.362 9 C 0.007 3.993 10 C -0.156 4.156 11 C -0.069 4.069 12 N -0.266 5.266 13 C -0.074 4.074 14 C 0.017 3.983 15 N -0.338 5.338 16 C -0.399 4.399 17 H 0.081 0.919 18 C -0.242 4.242 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.194 1.194 24 C 0.061 3.939 25 C -0.079 4.079 26 C 0.080 3.920 27 C -0.163 4.163 28 N -0.257 5.257 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.219 0.781 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.106 0.894 49 H 0.111 0.889 50 H 0.104 0.896 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.097 -20.520 6.723 28.827 hybrid contribution 1.663 0.853 -1.417 2.346 sum -17.434 -19.667 5.306 26.812 Atomic orbital electron populations 1.20802 0.82946 1.05486 1.05360 1.24254 1.00043 0.83052 0.86012 1.68426 1.10116 1.30235 1.16784 1.23979 0.89586 0.98400 0.85109 1.21533 0.95561 0.96863 1.13420 1.17781 0.86068 0.84036 0.76345 1.90745 1.70062 1.31720 1.50979 1.45792 1.07925 1.08825 1.73689 1.21260 0.78287 0.97243 1.02537 1.21676 0.94974 0.95124 1.03808 1.22020 0.95074 0.88194 1.01593 1.61873 1.14072 1.19501 1.31114 1.22448 0.87312 0.97121 1.00480 1.21145 0.97309 0.91632 0.88230 1.44388 1.06575 1.58613 1.24208 1.19462 0.92566 1.06380 1.21521 0.91938 1.25847 0.98859 0.96230 1.03254 1.70194 1.23181 1.23512 1.40762 0.85303 0.78849 0.76752 0.79751 1.21149 1.22030 1.19366 1.20658 0.83972 0.91543 0.97749 1.22686 1.00140 0.96119 0.88949 1.22284 0.89135 0.96452 0.84135 1.21044 1.00139 0.90373 1.04733 1.68352 1.09217 1.30707 1.17412 0.87751 0.88209 0.88427 0.78100 0.74986 0.91699 0.90900 0.89817 0.91032 0.95057 0.89329 0.95999 0.88668 0.92423 0.96631 0.94000 0.97966 0.93626 0.96589 0.89384 0.88882 0.89612 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.31 71.24 0.73 -0.09 16 2 C 0.33 5.66 7.64 138.70 1.06 6.72 16 3 N -0.54 -9.41 10.32 -186.78 -1.93 -11.33 16 4 C 0.20 2.88 10.80 85.07 0.92 3.80 16 5 C -0.27 -4.69 5.91 -19.91 -0.12 -4.81 16 6 C 0.57 10.74 7.74 86.78 0.67 11.41 16 7 O -0.56 -13.47 13.52 -3.90 -0.05 -13.53 16 8 N -0.71 -10.18 5.51 -465.99 -2.57 -12.75 16 9 C 0.13 2.06 5.67 86.38 0.49 2.55 16 10 C -0.12 -2.03 5.26 30.60 0.16 -1.87 16 11 C 0.06 1.31 4.96 86.30 0.43 1.74 16 12 N -0.54 -16.85 4.63 -894.35 -4.14 -20.99 16 13 C 0.06 1.82 5.62 86.38 0.49 2.30 16 14 C 0.14 5.94 6.69 86.35 0.58 6.52 16 15 N -0.61 -31.13 3.01 -697.24 -2.10 -33.22 16 16 C -0.27 -14.93 9.58 84.03 0.80 -14.13 16 17 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 18 C -0.05 -2.56 4.86 84.86 0.41 -2.15 16 19 N -0.93 -55.12 11.53 21.65 0.25 -54.87 16 20 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C 0.19 8.94 5.43 86.50 0.47 9.41 16 25 C 0.05 1.81 5.48 86.54 0.47 2.28 16 26 C 0.23 4.38 6.86 42.92 0.29 4.67 16 27 C -0.11 -1.79 8.98 71.24 0.64 -1.15 16 28 N -0.54 -10.50 10.26 -175.03 -1.79 -12.30 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.20 1.48 6.57 -2.91 -0.02 1.46 16 33 H 0.41 3.82 6.64 -92.71 -0.62 3.20 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.28 6.40 -2.38 -0.02 1.26 16 38 H 0.03 0.71 8.12 -2.38 -0.02 0.69 16 39 H 0.09 1.69 7.97 -2.39 -0.02 1.67 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 42 H 0.06 2.32 7.95 -2.39 -0.02 2.31 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.05 2.45 6.46 -2.39 -0.02 2.43 16 47 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.09 2.68 6.16 -2.39 -0.01 2.66 16 49 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.10 1.87 5.96 -2.39 -0.01 1.85 16 Total: -1.00 -72.37 405.62 -1.47 -73.84 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.32 Total: 11.16 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 8.50 Total: 27.21 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -12.28 Total: -145.46 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.05 Total: -13.53 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.37 -1.47 -73.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713802788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.370 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds