Wall clock time and date at job start Wed Apr 1 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30843 * 126.46310 * 2 1 4 4 N 1.28907 * 109.73694 * 179.89383 * 3 2 1 5 5 C 1.29834 * 109.48252 * 0.43830 * 4 3 2 6 6 N 1.34689 * 126.46556 * 180.31434 * 2 1 3 7 7 C 1.46260 * 128.84648 * 359.84859 * 6 2 1 8 8 C 1.53319 * 108.72935 * 197.09599 * 7 6 2 9 9 H 1.08999 * 109.45402 * 69.72151 * 8 7 6 10 10 C 1.50697 * 109.44930 * 189.67909 * 8 7 6 11 11 O 1.21281 * 120.00243 * 359.97438 * 10 8 7 12 12 N 1.34782 * 119.99772 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99626 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46791 * 175.53014 * 13 12 10 15 15 N 1.46509 * 110.01673 * 55.26855 * 14 13 12 16 16 C 1.36933 * 119.99403 * 61.55642 * 15 14 13 17 17 H 1.07993 * 120.00437 * 354.36870 * 16 15 14 18 18 C 1.38816 * 119.99641 * 174.37984 * 16 15 14 19 19 N 1.31619 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47126 * 59.99905 * 20 18 16 22 22 H 1.48507 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47074 * 299.99323 * 20 18 16 24 24 C 1.54270 * 110.03146 * 293.88249 * 14 13 12 25 25 C 1.54966 * 104.15419 * 217.13682 * 24 14 13 26 26 C 1.54888 * 102.78017 * 37.88789 * 25 24 14 27 27 C 1.53872 * 110.03207 * 176.66154 * 14 13 12 28 28 C 1.53143 * 109.57895 * 309.70646 * 8 7 6 29 29 C 1.50803 * 128.52742 * 179.61994 * 5 4 3 30 30 H 1.09005 * 109.46857 * 269.68703 * 1 2 3 31 31 H 1.09000 * 109.47077 * 149.68619 * 1 2 3 32 32 H 1.09002 * 109.47227 * 29.68581 * 1 2 3 33 33 H 1.09000 * 109.59140 * 316.86624 * 7 6 2 34 34 H 1.09000 * 109.59271 * 77.16714 * 7 6 2 35 35 H 0.96991 * 119.99822 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47313 * 295.52649 * 13 12 10 37 37 H 1.08995 * 109.47236 * 55.53540 * 13 12 10 38 38 H 0.96994 * 120.00174 * 241.54680 * 15 14 13 39 39 H 0.97003 * 120.00342 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.48276 * 335.78369 * 24 14 13 41 41 H 1.08994 * 110.48667 * 98.42586 * 24 14 13 42 42 H 1.09002 * 110.72160 * 279.56700 * 25 24 14 43 43 H 1.09005 * 110.91917 * 156.29504 * 25 24 14 44 44 H 1.09001 * 110.48167 * 203.40491 * 26 25 24 45 45 H 1.08994 * 110.59818 * 80.81622 * 26 25 24 46 46 H 1.08999 * 110.03186 * 238.56445 * 27 14 13 47 47 H 1.09002 * 110.03296 * 359.97438 * 27 14 13 48 48 H 1.09001 * 109.49662 * 189.38241 * 28 8 7 49 49 H 1.08994 * 109.50243 * 309.45326 * 28 8 7 50 50 H 1.09005 * 109.72621 * 76.27091 * 29 5 4 51 51 H 1.08996 * 109.76891 * 315.61091 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0022 5 6 3.5816 -0.6155 -0.0056 6 7 2.3075 -1.0832 -0.0059 7 6 1.9367 -2.4980 -0.0107 8 6 3.1553 -3.3277 0.4103 9 1 3.3629 -3.1575 1.4667 10 6 2.8690 -4.7899 0.1843 11 8 1.7979 -5.1354 -0.2677 12 7 3.8034 -5.7137 0.4845 13 6 3.5249 -7.1352 0.2653 14 6 4.7784 -7.9547 0.5789 15 7 5.2397 -7.6650 1.9389 16 6 4.4308 -7.9393 3.0092 17 1 3.4199 -8.2835 2.8479 18 6 4.9101 -7.7748 4.3016 19 7 6.1421 -7.3557 4.4981 20 14 3.8064 -8.1484 5.7617 21 1 3.3864 -9.5719 5.7133 22 1 4.5500 -7.8947 7.0219 23 1 2.6058 -7.2759 5.7106 24 6 5.8917 -7.6274 -0.4376 25 6 6.5957 -8.9866 -0.6793 26 6 5.4162 -9.9904 -0.6672 27 6 4.4763 -9.4565 0.4334 28 6 4.3717 -2.9117 -0.4218 29 6 4.8052 -1.4970 -0.0144 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3634 0.8928 -0.5089 33 1 1.1206 -2.6643 0.6925 34 1 1.6212 -2.7898 -1.0124 35 1 4.6598 -5.4374 0.8464 36 1 2.7115 -7.4511 0.9186 37 1 3.2383 -7.2932 -0.7743 38 1 6.1181 -7.2790 2.0812 39 1 6.4772 -7.2410 5.4012 40 1 5.4620 -7.2501 -1.3656 41 1 6.5907 -6.9040 -0.0181 42 1 7.2977 -9.2057 0.1252 43 1 7.1016 -8.9966 -1.6448 44 1 5.7690 -10.9905 -0.4155 45 1 4.9087 -9.9974 -1.6318 46 1 4.6739 -9.9699 1.3744 47 1 3.4367 -9.6015 0.1399 48 1 5.1905 -3.6087 -0.2429 49 1 4.1097 -2.9220 -1.4797 50 1 5.2490 -1.5203 0.9810 51 1 5.5306 -1.1135 -0.7318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714513255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:05 Heat of formation + Delta-G solvation = 34.501972 kcal Electronic energy + Delta-G solvation = -31653.982113 eV Core-core repulsion = 27588.924202 eV Total energy + Delta-G solvation = -4065.057911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.43036 -40.04358 -38.48722 -36.81272 -34.50675 -34.12531 -33.43253 -31.81610 -30.80356 -30.51224 -28.40259 -28.00193 -27.50130 -25.49429 -24.12496 -23.44548 -23.04918 -21.51479 -20.71187 -20.18216 -19.58666 -18.67690 -17.53725 -17.16403 -16.74587 -16.25116 -15.97788 -15.56180 -15.14372 -14.98918 -14.68799 -14.36368 -14.16254 -14.11141 -14.05036 -13.62484 -13.32044 -13.29168 -13.08416 -12.87972 -12.67903 -12.44992 -12.28860 -12.08928 -11.68043 -11.62963 -11.42951 -11.28642 -11.11690 -10.90029 -10.78461 -10.68463 -10.61725 -10.48902 -10.42420 -10.23103 -10.17284 -9.97736 -9.76796 -9.68756 -9.07422 -9.03399 -8.67807 -7.14309 -5.92126 -3.22158 1.68729 2.25966 2.69952 2.75443 3.33615 3.34906 3.39579 3.40724 3.89443 4.10490 4.26417 4.33797 4.41256 4.46828 4.71637 4.82877 4.96084 4.98678 4.99366 5.08818 5.12634 5.13619 5.18431 5.34454 5.37732 5.46079 5.47331 5.53299 5.54807 5.64503 5.67728 5.73732 5.84720 5.85455 5.87036 6.00160 6.04199 6.07698 6.14448 6.21204 6.31573 6.45931 6.49007 6.63027 6.70553 6.72587 6.80450 7.01336 7.60297 7.77449 8.26359 8.37535 8.64280 9.38242 9.91340 10.26921 11.29429 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003084 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.170174 B = 9077.023337 C =10231.515893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.302 5.302 4 N -0.293 5.293 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.125 3.875 8 C -0.124 4.124 9 H 0.113 0.887 10 C 0.521 3.479 11 O -0.555 6.555 12 N -0.692 5.692 13 C 0.118 3.882 14 C 0.189 3.811 15 N -0.712 5.712 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.929 5.929 20 Si 0.901 3.099 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.287 1.287 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.130 4.130 28 C -0.117 4.117 29 C -0.032 4.032 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 5.700 -12.399 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.092 4.092 6 N -0.159 5.159 7 C 0.002 3.998 8 C -0.146 4.146 9 H 0.131 0.869 10 C 0.305 3.695 11 O -0.434 6.434 12 N -0.341 5.341 13 C -0.008 4.008 14 C 0.096 3.904 15 N -0.354 5.354 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.732 3.268 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.214 1.214 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.170 4.170 28 C -0.155 4.155 29 C -0.072 4.072 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.241 0.759 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.113 0.887 49 H 0.096 0.904 50 H 0.119 0.881 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.364 6.814 -12.556 14.937 hybrid contribution -0.409 -1.408 1.357 1.998 sum -4.772 5.406 -11.198 13.319 Atomic orbital electron populations 1.20219 0.83762 1.04541 1.04111 1.24650 0.97093 0.82793 1.04493 1.74465 0.96159 1.23730 1.19960 1.74026 1.12279 1.08096 1.18833 1.24731 0.87132 0.92545 1.04824 1.46022 1.06990 1.08575 1.54328 1.21761 0.97893 0.75059 1.05046 1.21616 0.95907 0.93472 1.03634 0.86933 1.19870 0.84462 0.86803 0.78390 1.90689 1.24333 1.82121 1.46272 1.45744 1.18139 1.06921 1.63304 1.22010 0.99940 0.79521 0.99369 1.20452 0.90872 0.92340 0.86709 1.42548 1.19085 1.74914 0.98833 1.19029 0.94752 1.38134 0.85003 0.91330 1.24701 0.96194 1.02022 0.97290 1.69630 1.15012 1.52240 1.20789 0.86375 0.79650 0.78217 0.82567 1.21213 1.21710 1.21378 1.22590 0.97626 0.97485 0.98348 1.22422 0.97530 0.95069 1.00664 1.22305 0.96602 0.98455 0.98496 1.22662 0.97920 0.97010 0.99424 1.21729 0.97084 0.96468 1.00227 1.20248 0.91120 0.90965 1.04854 0.89562 0.90286 0.88724 0.87971 0.88020 0.75854 0.91750 0.92494 0.78122 0.93395 0.91830 0.91528 0.91249 0.92569 0.92426 0.92587 0.89880 0.93042 0.88682 0.90361 0.88100 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.29 36.01 0.37 -0.16 16 2 C 0.18 2.19 8.07 -155.45 -1.25 0.94 16 3 N -0.30 -4.68 12.23 32.70 0.40 -4.28 16 4 N -0.29 -4.59 12.21 32.76 0.40 -4.19 16 5 C 0.18 2.23 7.75 -155.30 -1.20 1.03 16 6 N -0.47 -5.54 3.11 -110.86 -0.35 -5.89 16 7 C 0.13 1.31 5.46 -4.01 -0.02 1.29 16 8 C -0.12 -1.33 2.54 -91.53 -0.23 -1.56 16 9 H 0.11 1.23 8.12 -51.93 -0.42 0.80 16 10 C 0.52 7.23 7.15 -10.98 -0.08 7.15 16 11 O -0.55 -9.32 15.83 5.56 0.09 -9.23 16 12 N -0.69 -9.94 5.05 -60.29 -0.30 -10.24 16 13 C 0.12 1.88 4.04 -4.04 -0.02 1.86 16 14 C 0.19 3.05 0.68 -130.69 -0.09 2.96 16 15 N -0.71 -14.60 4.53 -46.19 -0.21 -14.81 16 16 C -0.24 -5.74 8.52 -15.06 -0.13 -5.87 16 17 H 0.07 1.67 7.27 -52.49 -0.38 1.29 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.93 -25.37 13.07 55.49 0.73 -24.64 16 20 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.12 -1.65 5.72 -25.03 -0.14 -1.79 16 25 C -0.12 -1.56 6.91 -24.70 -0.17 -1.73 16 26 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 27 C -0.13 -2.09 5.93 -25.62 -0.15 -2.24 16 28 C -0.12 -1.01 5.22 -26.42 -0.14 -1.15 16 29 C -0.03 -0.30 6.34 -27.59 -0.17 -0.47 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.05 7.80 -51.93 -0.40 0.65 16 35 H 0.41 5.62 7.32 -40.82 -0.30 5.32 16 36 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 37 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.38 8.49 7.44 -40.82 -0.30 8.19 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 0.77 7.79 -51.93 -0.40 0.36 16 41 H 0.07 0.90 7.71 -51.93 -0.40 0.49 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.58 7.36 -51.93 -0.38 1.20 16 47 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 48 H 0.09 0.73 7.32 -51.93 -0.38 0.35 16 49 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -31.37 402.89 -10.26 -41.63 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -8.36 Total: 11.28 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.70 Total: -1.76 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 0.67 Total: -64.06 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.37 -10.26 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714513255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.128 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds