Wall clock time and date at job start Wed Apr 1 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30843 * 126.46310 * 2 1 4 4 N 1.28907 * 109.73694 * 179.89383 * 3 2 1 5 5 C 1.29834 * 109.48252 * 0.43830 * 4 3 2 6 6 N 1.34689 * 126.46556 * 180.31434 * 2 1 3 7 7 C 1.46260 * 128.84648 * 359.84859 * 6 2 1 8 8 C 1.53319 * 108.72935 * 197.09599 * 7 6 2 9 9 H 1.08999 * 109.45402 * 69.72151 * 8 7 6 10 10 C 1.50697 * 109.44930 * 189.67909 * 8 7 6 11 11 O 1.21281 * 120.00243 * 359.97438 * 10 8 7 12 12 N 1.34782 * 119.99772 * 179.97438 * 10 8 7 13 13 C 1.46502 * 119.99626 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46791 * 175.53014 * 13 12 10 15 15 N 1.46509 * 110.01673 * 55.26855 * 14 13 12 16 16 C 1.36933 * 119.99403 * 61.55642 * 15 14 13 17 17 H 1.07993 * 120.00437 * 354.36870 * 16 15 14 18 18 C 1.38816 * 119.99641 * 174.37984 * 16 15 14 19 19 N 1.31619 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47126 * 59.99905 * 20 18 16 22 22 H 1.48507 * 109.46804 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47074 * 299.99323 * 20 18 16 24 24 C 1.54270 * 110.03146 * 293.88249 * 14 13 12 25 25 C 1.54966 * 104.15419 * 217.13682 * 24 14 13 26 26 C 1.54888 * 102.78017 * 37.88789 * 25 24 14 27 27 C 1.53872 * 110.03207 * 176.66154 * 14 13 12 28 28 C 1.53143 * 109.57895 * 309.70646 * 8 7 6 29 29 C 1.50803 * 128.52742 * 179.61994 * 5 4 3 30 30 H 1.09005 * 109.46857 * 269.68703 * 1 2 3 31 31 H 1.09000 * 109.47077 * 149.68619 * 1 2 3 32 32 H 1.09002 * 109.47227 * 29.68581 * 1 2 3 33 33 H 1.09000 * 109.59140 * 316.86624 * 7 6 2 34 34 H 1.09000 * 109.59271 * 77.16714 * 7 6 2 35 35 H 0.96991 * 119.99822 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47313 * 295.52649 * 13 12 10 37 37 H 1.08995 * 109.47236 * 55.53540 * 13 12 10 38 38 H 0.96994 * 120.00174 * 241.54680 * 15 14 13 39 39 H 0.97003 * 120.00342 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.48276 * 335.78369 * 24 14 13 41 41 H 1.08994 * 110.48667 * 98.42586 * 24 14 13 42 42 H 1.09002 * 110.72160 * 279.56700 * 25 24 14 43 43 H 1.09005 * 110.91917 * 156.29504 * 25 24 14 44 44 H 1.09001 * 110.48167 * 203.40491 * 26 25 24 45 45 H 1.08994 * 110.59818 * 80.81622 * 26 25 24 46 46 H 1.08999 * 110.03186 * 238.56445 * 27 14 13 47 47 H 1.09002 * 110.03296 * 359.97438 * 27 14 13 48 48 H 1.09001 * 109.49662 * 189.38241 * 28 8 7 49 49 H 1.08994 * 109.50243 * 309.45326 * 28 8 7 50 50 H 1.09005 * 109.72621 * 76.27091 * 29 5 4 51 51 H 1.08996 * 109.76891 * 315.61091 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0022 5 6 3.5816 -0.6155 -0.0056 6 7 2.3075 -1.0832 -0.0059 7 6 1.9367 -2.4980 -0.0107 8 6 3.1553 -3.3277 0.4103 9 1 3.3629 -3.1575 1.4667 10 6 2.8690 -4.7899 0.1843 11 8 1.7979 -5.1354 -0.2677 12 7 3.8034 -5.7137 0.4845 13 6 3.5249 -7.1352 0.2653 14 6 4.7784 -7.9547 0.5789 15 7 5.2397 -7.6650 1.9389 16 6 4.4308 -7.9393 3.0092 17 1 3.4199 -8.2835 2.8479 18 6 4.9101 -7.7748 4.3016 19 7 6.1421 -7.3557 4.4981 20 14 3.8064 -8.1484 5.7617 21 1 3.3864 -9.5719 5.7133 22 1 4.5500 -7.8947 7.0219 23 1 2.6058 -7.2759 5.7106 24 6 5.8917 -7.6274 -0.4376 25 6 6.5957 -8.9866 -0.6793 26 6 5.4162 -9.9904 -0.6672 27 6 4.4763 -9.4565 0.4334 28 6 4.3717 -2.9117 -0.4218 29 6 4.8052 -1.4970 -0.0144 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3634 0.8928 -0.5089 33 1 1.1206 -2.6643 0.6925 34 1 1.6212 -2.7898 -1.0124 35 1 4.6598 -5.4374 0.8464 36 1 2.7115 -7.4511 0.9186 37 1 3.2383 -7.2932 -0.7743 38 1 6.1181 -7.2790 2.0812 39 1 6.4772 -7.2410 5.4012 40 1 5.4620 -7.2501 -1.3656 41 1 6.5907 -6.9040 -0.0181 42 1 7.2977 -9.2057 0.1252 43 1 7.1016 -8.9966 -1.6448 44 1 5.7690 -10.9905 -0.4155 45 1 4.9087 -9.9974 -1.6318 46 1 4.6739 -9.9699 1.3744 47 1 3.4367 -9.6015 0.1399 48 1 5.1905 -3.6087 -0.2429 49 1 4.1097 -2.9220 -1.4797 50 1 5.2490 -1.5203 0.9810 51 1 5.5306 -1.1135 -0.7318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714513255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:04 Heat of formation + Delta-G solvation = 15.992149 kcal Electronic energy + Delta-G solvation = -31654.784759 eV Core-core repulsion = 27588.924202 eV Total energy + Delta-G solvation = -4065.860557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.38262 -41.18624 -39.72637 -37.78684 -35.63366 -35.26480 -34.95249 -32.81212 -32.23696 -31.43725 -29.58709 -29.40147 -28.34252 -26.64759 -25.54548 -24.64242 -24.12137 -22.42939 -21.81028 -21.25631 -20.59375 -19.97364 -18.99583 -18.48960 -17.70204 -17.40328 -17.10694 -16.73026 -16.38742 -15.99011 -15.87419 -15.70291 -15.20744 -15.15536 -15.00672 -14.88523 -14.66176 -14.31938 -13.98784 -13.93987 -13.50812 -13.44931 -13.23925 -13.21320 -13.15449 -12.85475 -12.65733 -12.58143 -12.32994 -12.25384 -12.08122 -12.01875 -11.81096 -11.76853 -11.51641 -11.40741 -11.39345 -11.29257 -11.16319 -10.94354 -10.79090 -10.03794 -9.92303 -8.94037 -7.90079 -5.15219 0.77827 1.35772 1.45299 1.48024 1.51587 1.59604 1.75206 2.27241 2.57425 3.05796 3.25847 3.39749 3.43303 3.54292 3.58669 3.78653 3.88117 3.91571 3.97943 4.01484 4.13405 4.20334 4.25540 4.31827 4.45932 4.55172 4.60513 4.61101 4.64671 4.72355 4.81078 4.81649 4.84938 4.89836 4.94979 4.97809 5.00622 5.02343 5.05833 5.18329 5.21614 5.22650 5.31162 5.43662 5.47541 5.57181 5.66305 5.72311 5.85899 6.33959 6.62049 7.23557 7.41899 7.65375 8.16172 8.40580 9.31803 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003084 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.170174 B = 9077.023337 C =10231.515893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.345 5.345 4 N -0.334 5.334 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.129 3.871 8 C -0.116 4.116 9 H 0.113 0.887 10 C 0.524 3.476 11 O -0.583 6.583 12 N -0.691 5.691 13 C 0.126 3.874 14 C 0.185 3.815 15 N -0.714 5.714 16 C -0.214 4.214 17 H 0.063 0.937 18 C -0.060 4.060 19 N -0.959 5.959 20 Si 0.946 3.054 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.287 1.287 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.108 4.108 29 C -0.029 4.029 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.377 0.623 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.110 0.890 49 H 0.084 0.916 50 H 0.109 0.891 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 5.337 -14.391 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.185 5.185 4 N -0.173 5.173 5 C -0.094 4.094 6 N -0.160 5.160 7 C 0.006 3.994 8 C -0.138 4.138 9 H 0.131 0.869 10 C 0.309 3.691 11 O -0.464 6.464 12 N -0.340 5.340 13 C 0.000 4.000 14 C 0.094 3.906 15 N -0.355 5.355 16 C -0.346 4.346 17 H 0.081 0.919 18 C -0.253 4.253 19 N -0.609 5.609 20 Si 0.777 3.223 21 H -0.212 1.212 22 H -0.226 1.226 23 H -0.214 1.214 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.172 4.172 28 C -0.146 4.146 29 C -0.068 4.068 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.246 0.754 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.210 0.790 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.129 0.871 49 H 0.102 0.898 50 H 0.127 0.873 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.588 6.449 -14.581 16.591 hybrid contribution -0.433 -1.349 1.897 2.368 sum -5.021 5.099 -12.684 14.564 Atomic orbital electron populations 1.20431 0.80926 1.05879 1.05320 1.25398 0.98630 0.82280 1.02619 1.74373 0.96649 1.25428 1.22059 1.73928 1.12829 1.09792 1.20747 1.25340 0.88427 0.92260 1.03407 1.46129 1.06768 1.08909 1.54209 1.21789 0.97886 0.74241 1.05443 1.21541 0.97030 0.91128 1.04086 0.86940 1.20288 0.83662 0.87816 0.77299 1.90679 1.25419 1.82813 1.47504 1.45716 1.18503 1.06402 1.63413 1.21804 0.98428 0.80358 0.99406 1.20697 0.92121 0.92516 0.85273 1.42616 1.18285 1.74648 0.99947 1.19179 0.94591 1.34976 0.85873 0.91871 1.25176 0.97155 1.03872 0.99141 1.69733 1.16193 1.54770 1.20240 0.85638 0.78314 0.77841 0.80471 1.21242 1.22641 1.21419 1.22555 0.96519 0.97931 0.98194 1.22415 0.97104 0.94475 1.01449 1.22292 0.96093 0.98488 0.98359 1.22616 0.99196 0.96487 0.98919 1.21714 0.96491 0.96349 1.00055 1.20411 0.90063 0.90430 1.05908 0.88290 0.88487 0.87819 0.87502 0.87593 0.75398 0.94948 0.90985 0.78974 0.94352 0.89423 0.91353 0.93306 0.89718 0.92230 0.90192 0.93507 0.92450 0.87131 0.89755 0.87291 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.29 71.24 0.73 -0.21 16 2 C 0.18 4.27 8.07 138.14 1.11 5.39 16 3 N -0.34 -10.69 12.23 -50.46 -0.62 -11.31 16 4 N -0.33 -10.45 12.21 -50.27 -0.61 -11.07 16 5 C 0.17 4.26 7.75 138.14 1.07 5.33 16 6 N -0.47 -10.49 3.11 -504.64 -1.57 -12.06 16 7 C 0.13 2.46 5.46 86.53 0.47 2.93 16 8 C -0.12 -2.25 2.54 -11.39 -0.03 -2.28 16 9 H 0.11 2.25 8.12 -2.39 -0.02 2.23 16 10 C 0.52 13.55 7.15 87.66 0.63 14.18 16 11 O -0.58 -18.64 15.83 -3.03 -0.05 -18.69 16 12 N -0.69 -18.59 5.05 -463.05 -2.34 -20.92 16 13 C 0.13 3.84 4.04 86.38 0.35 4.19 16 14 C 0.18 5.70 0.68 4.33 0.00 5.71 16 15 N -0.71 -29.01 4.53 -300.05 -1.36 -30.37 16 16 C -0.21 -10.33 8.52 84.04 0.72 -9.61 16 17 H 0.06 3.10 7.27 -2.91 -0.02 3.08 16 18 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 19 N -0.96 -53.02 13.07 21.65 0.28 -52.74 16 20 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 C -0.11 -2.73 5.72 31.70 0.18 -2.55 16 25 C -0.12 -2.72 6.91 31.91 0.22 -2.50 16 26 C -0.11 -2.75 6.83 31.67 0.22 -2.53 16 27 C -0.13 -4.09 5.93 31.32 0.19 -3.91 16 28 C -0.11 -1.58 5.22 30.80 0.16 -1.41 16 29 C -0.03 -0.47 6.34 30.04 0.19 -0.28 16 30 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 31 H 0.10 1.02 8.04 -2.39 -0.02 1.00 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 1.97 7.80 -2.39 -0.02 1.95 16 35 H 0.41 10.54 7.32 -92.71 -0.68 9.86 16 36 H 0.03 1.19 7.46 -2.39 -0.02 1.17 16 37 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 38 H 0.38 16.54 7.44 -92.71 -0.69 15.85 16 39 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 40 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 41 H 0.07 1.65 7.71 -2.39 -0.02 1.63 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.05 1.78 7.36 -2.39 -0.02 1.77 16 47 H 0.06 1.68 7.67 -2.39 -0.02 1.66 16 48 H 0.11 1.32 7.32 -2.39 -0.02 1.31 16 49 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 50 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.33 402.89 2.02 -67.31 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.42 Total: 34.22 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.68 Total: 9.76 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -6.22 Total: -138.47 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.33 2.02 -67.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714513255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.302 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds