Wall clock time and date at job start Wed Apr 1 2020 04:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99959 * 2 1 4 4 C 1.38405 * 120.00209 * 179.97438 * 2 1 3 5 5 C 1.39901 * 119.99547 * 5.00608 * 4 2 1 6 6 N 1.31450 * 120.01100 * 180.02562 * 5 4 2 7 7 C 1.33281 * 120.01404 * 359.97438 * 6 5 4 8 8 C 1.47814 * 120.00134 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99769 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00446 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00186 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47043 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.45519 * 60.03155 * 12 11 10 14 14 C 1.53033 * 109.46218 * 300.07479 * 12 11 10 15 15 C 1.53198 * 109.31098 * 178.61331 * 14 12 11 16 16 N 1.46924 * 108.77418 * 54.63473 * 15 14 12 17 17 C 1.36940 * 120.63427 * 126.41736 * 16 15 14 18 18 H 1.08003 * 119.99864 * 207.66059 * 17 16 15 19 19 C 1.38807 * 119.99856 * 27.65491 * 17 16 15 20 20 N 1.31621 * 120.00124 * 17.37078 * 19 17 16 21 21 Si 1.86797 * 120.00011 * 197.37275 * 19 17 16 22 22 H 1.48501 * 109.47486 * 90.00038 * 21 19 17 23 23 H 1.48504 * 109.47470 * 209.99902 * 21 19 17 24 24 H 1.48501 * 109.47528 * 330.00073 * 21 19 17 25 25 C 1.46928 * 118.73900 * 306.38748 * 16 15 14 26 26 C 1.53044 * 109.45722 * 179.97438 * 12 11 10 27 27 C 1.39408 * 119.99199 * 0.27992 * 7 6 5 28 28 N 1.32054 * 119.98389 * 359.45450 * 27 7 6 29 29 H 1.09001 * 109.47251 * 270.00062 * 1 2 3 30 30 H 1.08996 * 109.47170 * 30.00832 * 1 2 3 31 31 H 1.09003 * 109.46909 * 150.00598 * 1 2 3 32 32 H 1.09001 * 109.46515 * 269.99592 * 3 2 1 33 33 H 1.09000 * 109.47259 * 29.99401 * 3 2 1 34 34 H 1.09002 * 109.47307 * 150.00190 * 3 2 1 35 35 H 1.08002 * 119.99023 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99811 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47035 * 60.00234 * 11 10 8 38 38 H 1.08992 * 109.46933 * 300.00626 * 11 10 8 39 39 H 1.09004 * 109.47417 * 60.00018 * 13 12 11 40 40 H 1.09002 * 109.46731 * 179.97438 * 13 12 11 41 41 H 1.08996 * 109.47240 * 299.99530 * 13 12 11 42 42 H 1.09007 * 109.49745 * 298.56077 * 14 12 11 43 43 H 1.08994 * 109.50065 * 58.66102 * 14 12 11 44 44 H 1.09000 * 109.58632 * 294.84427 * 15 14 12 45 45 H 1.09004 * 109.58741 * 174.41714 * 15 14 12 46 46 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58990 * 293.82806 * 25 16 15 48 48 H 1.08996 * 109.70639 * 173.46986 * 25 16 15 49 49 H 1.08999 * 109.49767 * 301.34044 * 26 12 11 50 50 H 1.09002 * 109.49257 * 61.44224 * 26 12 11 51 51 H 1.07997 * 120.00827 * 179.72389 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4079 -0.1047 6 7 2.1184 -3.5464 -0.1037 7 6 3.4474 -3.5492 -0.0030 8 6 4.1859 -4.8297 -0.0025 9 8 5.3980 -4.8322 0.0898 10 7 3.5154 -5.9944 -0.1033 11 6 4.2475 -7.2635 -0.1034 12 6 3.2574 -8.4233 -0.2273 13 6 2.4738 -8.2870 -1.5344 14 6 2.2859 -8.3930 0.9547 15 6 1.2748 -9.5347 0.8090 16 7 2.0079 -10.7996 0.6626 17 6 1.7421 -11.8596 1.4879 18 1 2.5136 -12.5848 1.7009 19 6 0.4812 -12.0020 2.0506 20 7 -0.5423 -11.3457 1.5466 21 14 0.2371 -13.1248 3.5233 22 1 0.4356 -12.3504 4.7747 23 1 -1.1396 -13.6813 3.4988 24 1 1.2210 -14.2357 3.4674 25 6 3.0310 -10.9059 -0.3865 26 6 4.0224 -9.7488 -0.2280 27 6 4.1405 -2.3447 0.1072 28 7 3.4808 -1.2007 0.1009 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 2.3791 1.5832 -1.0277 33 1 1.6083 2.0284 0.5137 34 1 3.1499 1.1384 0.5138 35 1 0.3846 -2.4059 -0.1867 36 1 2.5482 -5.9925 -0.1766 37 1 4.8058 -7.3608 0.8277 38 1 4.9390 -7.2839 -0.9455 39 1 3.1655 -8.3080 -2.3766 40 1 1.7687 -9.1135 -1.6231 41 1 1.9293 -7.3428 -1.5348 42 1 2.8408 -8.5150 1.8850 43 1 1.7583 -7.4393 0.9677 44 1 0.6576 -9.3658 -0.0734 45 1 0.6432 -9.5790 1.6963 46 1 -1.4236 -11.4455 1.9396 47 1 2.5571 -10.8488 -1.3664 48 1 3.5586 -11.8548 -0.2906 49 1 4.7305 -9.7598 -1.0566 50 1 4.5613 -9.8582 0.7132 51 1 5.2170 -2.3468 0.1933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716884395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:38 Heat of formation + Delta-G solvation = 46.626815 kcal Electronic energy + Delta-G solvation = -30730.888183 eV Core-core repulsion = 26666.356045 eV Total energy + Delta-G solvation = -4064.532138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.47700 -39.66961 -38.38232 -37.29750 -35.07403 -34.41812 -33.01039 -31.33061 -30.70879 -29.87020 -28.96297 -27.33806 -26.97117 -26.06932 -24.48639 -23.98845 -22.89180 -22.21958 -20.92354 -20.42070 -18.45799 -18.07782 -17.91779 -17.53029 -16.34794 -16.12660 -15.72574 -15.38962 -15.27256 -14.91606 -14.82699 -14.52398 -14.34329 -13.88782 -13.84080 -13.44480 -13.39003 -13.30867 -13.12155 -12.88083 -12.75256 -12.57958 -12.50817 -11.97279 -11.76370 -11.59050 -11.43110 -11.21856 -11.13471 -10.72410 -10.67855 -10.50421 -10.45114 -10.28124 -10.13128 -10.12317 -9.76086 -9.49792 -9.36873 -9.30112 -8.89329 -8.40769 -8.15526 -6.61406 -5.75269 -3.16498 0.40137 0.87177 2.25262 2.73222 3.22116 3.40160 3.47196 3.48089 3.68479 3.90332 3.94594 4.07464 4.52928 4.55138 4.68163 4.74076 4.81880 4.94586 5.09279 5.09866 5.13877 5.24022 5.27346 5.31820 5.35962 5.44738 5.57485 5.80523 5.84660 5.91729 6.01494 6.16360 6.17434 6.18313 6.21384 6.38228 6.50581 6.55914 6.58137 6.64202 6.67805 6.76279 6.84394 6.93998 7.05244 7.05779 7.41866 7.45063 7.70392 7.72206 7.83686 8.26318 8.49208 9.25773 9.89621 10.46292 11.33024 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002238 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.008136 B =12505.569142 C =13665.570956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.092 3.908 4 C 0.370 3.630 5 C -0.005 4.005 6 N -0.372 5.372 7 C -0.047 4.047 8 C 0.579 3.421 9 O -0.545 6.545 10 N -0.702 5.702 11 C 0.128 3.872 12 C -0.063 4.063 13 C -0.142 4.142 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.146 3.854 26 C -0.120 4.120 27 C 0.170 3.830 28 N -0.509 5.509 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.021 0.979 45 H 0.085 0.915 46 H 0.253 0.747 47 H 0.020 0.980 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 24.656 -5.496 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.312 5.312 3 C -0.051 4.051 4 C 0.130 3.870 5 C -0.177 4.177 6 N -0.088 5.088 7 C -0.187 4.187 8 C 0.363 3.637 9 O -0.423 6.423 10 N -0.353 5.353 11 C 0.005 3.995 12 C -0.064 4.064 13 C -0.200 4.200 14 C -0.169 4.169 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.020 3.980 26 C -0.160 4.160 27 C 0.008 3.992 28 N -0.232 5.232 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.432 24.736 -5.383 25.546 hybrid contribution -0.775 -0.371 0.769 1.153 sum 2.656 24.365 -4.614 24.940 Atomic orbital electron populations 1.21897 0.77477 1.03802 1.02448 1.46218 1.05750 1.03044 1.76138 1.21715 0.97928 0.83579 1.01868 1.19630 0.89875 0.87600 0.89876 1.23223 1.01448 0.86533 1.06541 1.68140 1.07752 1.28852 1.04032 1.21732 0.90635 0.95728 1.10624 1.17487 0.86432 0.82799 0.76955 1.90779 1.13030 1.87198 1.51298 1.45940 1.11790 1.05311 1.72247 1.21606 0.94447 0.81651 1.01811 1.20690 0.95309 0.93652 0.96738 1.21945 1.00223 1.01965 0.95834 1.22250 0.98454 0.99828 0.96412 1.20794 0.91240 0.82281 1.01104 1.44037 1.42061 1.10281 1.35030 1.19201 0.94313 1.03735 1.20621 0.91749 1.25013 0.95145 0.99244 1.00366 1.70035 0.98913 1.45584 1.40253 0.86309 0.76972 0.80367 0.83243 1.21537 1.21853 1.20487 1.20905 0.90233 0.95118 0.91778 1.22000 0.98078 0.94996 1.00885 1.23494 1.01611 0.85920 0.88132 1.68111 1.06262 1.29539 1.19249 0.92006 0.90276 0.90429 0.92816 0.91243 0.89874 0.81092 0.75165 0.91503 0.91725 0.93467 0.90751 0.93520 0.92604 0.93492 0.96076 0.89672 0.93739 0.96171 0.92955 0.92923 0.92119 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 10.28 59.85 0.62 0.92 16 2 N -0.60 -4.09 3.37 -189.51 -0.64 -4.73 16 3 C 0.09 0.49 10.50 59.85 0.63 1.12 16 4 C 0.37 3.60 7.37 -155.01 -1.14 2.45 16 5 C 0.00 -0.05 10.42 -17.09 -0.18 -0.22 16 6 N -0.37 -4.58 9.69 -9.44 -0.09 -4.67 16 7 C -0.05 -0.61 6.74 -82.89 -0.56 -1.17 16 8 C 0.58 8.69 7.80 -12.34 -0.10 8.59 16 9 O -0.55 -9.37 16.33 5.31 0.09 -9.29 16 10 N -0.70 -10.16 4.94 -61.26 -0.30 -10.47 16 11 C 0.13 1.92 4.56 -4.04 -0.02 1.91 16 12 C -0.06 -1.02 0.53 -154.47 -0.08 -1.11 16 13 C -0.14 -2.20 7.54 37.16 0.28 -1.92 16 14 C -0.13 -2.43 4.75 -26.61 -0.13 -2.56 16 15 C 0.17 3.98 4.84 -3.71 -0.02 3.96 16 16 N -0.59 -14.54 3.00 -172.32 -0.52 -15.06 16 17 C -0.25 -6.80 9.59 -15.06 -0.14 -6.95 16 18 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 21 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 3.00 6.04 -3.71 -0.02 2.98 16 26 C -0.12 -2.04 4.91 -26.61 -0.13 -2.17 16 27 C 0.17 2.00 10.76 -17.02 -0.18 1.82 16 28 N -0.51 -5.66 9.22 -11.95 -0.11 -5.77 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 31 H 0.08 0.23 5.98 -51.93 -0.31 -0.08 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 34 H 0.08 0.56 7.30 -51.93 -0.38 0.18 16 35 H 0.17 1.15 6.02 -52.49 -0.32 0.83 16 36 H 0.41 5.78 5.49 -40.82 -0.22 5.55 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.32 4.98 -51.93 -0.26 1.06 16 41 H 0.05 0.67 6.86 -51.93 -0.36 0.31 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.80 6.82 -51.93 -0.35 0.45 16 44 H 0.02 0.51 6.69 -51.93 -0.35 0.16 16 45 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 48 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.18 1.91 7.63 -52.49 -0.40 1.51 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -32.61 396.11 -9.06 -41.67 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.79 Total: 3.41 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.26 Total: 7.59 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -1.04 Total: -66.12 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.61 -9.06 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716884395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.302 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds