Wall clock time and date at job start Wed Apr 1 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99959 * 2 1 4 4 C 1.38405 * 120.00209 * 179.97438 * 2 1 3 5 5 C 1.39901 * 119.99547 * 5.00608 * 4 2 1 6 6 N 1.31450 * 120.01100 * 180.02562 * 5 4 2 7 7 C 1.33281 * 120.01404 * 359.97438 * 6 5 4 8 8 C 1.47814 * 120.00134 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99769 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00446 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00186 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47043 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.45519 * 60.03155 * 12 11 10 14 14 C 1.53033 * 109.46218 * 300.07479 * 12 11 10 15 15 C 1.53198 * 109.31098 * 178.61331 * 14 12 11 16 16 N 1.46924 * 108.77418 * 54.63473 * 15 14 12 17 17 C 1.36940 * 120.63427 * 126.41736 * 16 15 14 18 18 H 1.08003 * 119.99864 * 207.66059 * 17 16 15 19 19 C 1.38807 * 119.99856 * 27.65491 * 17 16 15 20 20 N 1.31621 * 120.00124 * 17.37078 * 19 17 16 21 21 Si 1.86797 * 120.00011 * 197.37275 * 19 17 16 22 22 H 1.48501 * 109.47486 * 90.00038 * 21 19 17 23 23 H 1.48504 * 109.47470 * 209.99902 * 21 19 17 24 24 H 1.48501 * 109.47528 * 330.00073 * 21 19 17 25 25 C 1.46928 * 118.73900 * 306.38748 * 16 15 14 26 26 C 1.53044 * 109.45722 * 179.97438 * 12 11 10 27 27 C 1.39408 * 119.99199 * 0.27992 * 7 6 5 28 28 N 1.32054 * 119.98389 * 359.45450 * 27 7 6 29 29 H 1.09001 * 109.47251 * 270.00062 * 1 2 3 30 30 H 1.08996 * 109.47170 * 30.00832 * 1 2 3 31 31 H 1.09003 * 109.46909 * 150.00598 * 1 2 3 32 32 H 1.09001 * 109.46515 * 269.99592 * 3 2 1 33 33 H 1.09000 * 109.47259 * 29.99401 * 3 2 1 34 34 H 1.09002 * 109.47307 * 150.00190 * 3 2 1 35 35 H 1.08002 * 119.99023 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99811 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47035 * 60.00234 * 11 10 8 38 38 H 1.08992 * 109.46933 * 300.00626 * 11 10 8 39 39 H 1.09004 * 109.47417 * 60.00018 * 13 12 11 40 40 H 1.09002 * 109.46731 * 179.97438 * 13 12 11 41 41 H 1.08996 * 109.47240 * 299.99530 * 13 12 11 42 42 H 1.09007 * 109.49745 * 298.56077 * 14 12 11 43 43 H 1.08994 * 109.50065 * 58.66102 * 14 12 11 44 44 H 1.09000 * 109.58632 * 294.84427 * 15 14 12 45 45 H 1.09004 * 109.58741 * 174.41714 * 15 14 12 46 46 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58990 * 293.82806 * 25 16 15 48 48 H 1.08996 * 109.70639 * 173.46986 * 25 16 15 49 49 H 1.08999 * 109.49767 * 301.34044 * 26 12 11 50 50 H 1.09002 * 109.49257 * 61.44224 * 26 12 11 51 51 H 1.07997 * 120.00827 * 179.72389 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1986 0.0005 5 6 1.4615 -2.4079 -0.1047 6 7 2.1184 -3.5464 -0.1037 7 6 3.4474 -3.5492 -0.0030 8 6 4.1859 -4.8297 -0.0025 9 8 5.3980 -4.8322 0.0898 10 7 3.5154 -5.9944 -0.1033 11 6 4.2475 -7.2635 -0.1034 12 6 3.2574 -8.4233 -0.2273 13 6 2.4738 -8.2870 -1.5344 14 6 2.2859 -8.3930 0.9547 15 6 1.2748 -9.5347 0.8090 16 7 2.0079 -10.7996 0.6626 17 6 1.7421 -11.8596 1.4879 18 1 2.5136 -12.5848 1.7009 19 6 0.4812 -12.0020 2.0506 20 7 -0.5423 -11.3457 1.5466 21 14 0.2371 -13.1248 3.5233 22 1 0.4356 -12.3504 4.7747 23 1 -1.1396 -13.6813 3.4988 24 1 1.2210 -14.2357 3.4674 25 6 3.0310 -10.9059 -0.3865 26 6 4.0224 -9.7488 -0.2280 27 6 4.1405 -2.3447 0.1072 28 7 3.4808 -1.2007 0.1009 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 2.3791 1.5832 -1.0277 33 1 1.6083 2.0284 0.5137 34 1 3.1499 1.1384 0.5138 35 1 0.3846 -2.4059 -0.1867 36 1 2.5482 -5.9925 -0.1766 37 1 4.8058 -7.3608 0.8277 38 1 4.9390 -7.2839 -0.9455 39 1 3.1655 -8.3080 -2.3766 40 1 1.7687 -9.1135 -1.6231 41 1 1.9293 -7.3428 -1.5348 42 1 2.8408 -8.5150 1.8850 43 1 1.7583 -7.4393 0.9677 44 1 0.6576 -9.3658 -0.0734 45 1 0.6432 -9.5790 1.6963 46 1 -1.4236 -11.4455 1.9396 47 1 2.5571 -10.8488 -1.3664 48 1 3.5586 -11.8548 -0.2906 49 1 4.7305 -9.7598 -1.0566 50 1 4.5613 -9.8582 0.7132 51 1 5.2170 -2.3468 0.1933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716884395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:37 Heat of formation + Delta-G solvation = 25.581799 kcal Electronic energy + Delta-G solvation = -30731.800764 eV Core-core repulsion = 26666.356045 eV Total energy + Delta-G solvation = -4065.444719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.29370 -40.89125 -39.73321 -37.95650 -36.60424 -35.32678 -34.51433 -32.72169 -31.90699 -31.55540 -29.36948 -28.77499 -28.18573 -27.08126 -25.72374 -25.17275 -24.00788 -23.56325 -22.42637 -21.60150 -19.70599 -19.32491 -18.80770 -18.37987 -18.05166 -16.86882 -16.83465 -16.75929 -16.35352 -16.15417 -15.80595 -15.49660 -15.44637 -15.30802 -15.17653 -15.00141 -14.63594 -14.41604 -14.40556 -13.99104 -13.43924 -13.42133 -13.30861 -13.14608 -12.94783 -12.93007 -12.66088 -12.56232 -12.51898 -12.42425 -12.31860 -12.21760 -11.87725 -11.78043 -11.45175 -11.41846 -11.15320 -11.06808 -11.02426 -10.47210 -10.18835 -10.07342 -8.79844 -8.61245 -7.84047 -5.27607 -0.44848 0.07275 1.46623 1.48504 1.56606 1.69474 1.71980 2.15534 2.53023 2.79335 3.07259 3.22767 3.29331 3.35660 3.74526 3.80327 3.89042 3.90241 3.97939 4.02631 4.22828 4.37277 4.44403 4.48682 4.55177 4.56199 4.63566 4.73555 4.75590 4.79016 4.86710 4.87422 4.91236 4.92976 4.98598 5.08776 5.10981 5.15576 5.29035 5.33996 5.42679 5.43158 5.51649 5.58827 5.64232 5.69492 5.86826 5.94566 6.26911 6.43060 6.49828 6.76830 7.14391 7.19383 7.92203 8.42911 9.21687 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002238 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.008136 B =12505.569142 C =13665.570956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.087 3.913 4 C 0.369 3.631 5 C -0.001 4.001 6 N -0.388 5.388 7 C -0.075 4.075 8 C 0.580 3.420 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.138 3.862 12 C -0.054 4.054 13 C -0.136 4.136 14 C -0.116 4.116 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.142 3.858 26 C -0.111 4.111 27 C 0.172 3.828 28 N -0.524 5.524 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.202 0.798 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.047 0.953 46 H 0.249 0.751 47 H 0.022 0.978 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 26.688 -6.029 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.055 4.055 4 C 0.127 3.873 5 C -0.176 4.176 6 N -0.103 5.103 7 C -0.214 4.214 8 C 0.366 3.634 9 O -0.454 6.454 10 N -0.351 5.351 11 C 0.015 3.985 12 C -0.054 4.054 13 C -0.193 4.193 14 C -0.155 4.155 15 C 0.055 3.945 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.081 0.919 19 C -0.247 4.247 20 N -0.579 5.579 21 Si 0.791 3.209 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.017 3.983 26 C -0.151 4.151 27 C 0.011 3.989 28 N -0.248 5.248 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.025 0.975 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.040 0.960 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.294 26.789 -5.929 27.635 hybrid contribution -0.845 -0.825 0.893 1.480 sum 2.449 25.965 -5.036 26.562 Atomic orbital electron populations 1.22210 0.75288 1.05433 1.03572 1.46636 1.07169 1.02529 1.73747 1.21857 0.97753 0.83465 1.02464 1.19930 0.89658 0.88837 0.88923 1.23730 1.02681 0.85882 1.05260 1.68080 1.07457 1.30135 1.04648 1.21408 0.91150 0.94998 1.13853 1.17737 0.86186 0.83405 0.76061 1.90750 1.14215 1.87689 1.52730 1.45879 1.11802 1.05097 1.72304 1.21414 0.93936 0.81286 1.01864 1.20563 0.94927 0.93977 0.95955 1.21860 1.00031 1.01468 0.95913 1.22036 0.97831 0.98535 0.97128 1.20569 0.91788 0.83556 0.98588 1.44294 1.42877 1.10149 1.35966 1.19501 0.94269 1.04206 1.20954 0.91895 1.25725 0.95014 1.01123 1.02821 1.70177 0.99023 1.47233 1.41455 0.85333 0.76663 0.78850 0.80016 1.21517 1.22135 1.19479 1.21053 0.89911 0.96675 0.90662 1.21888 0.97550 0.93729 1.01892 1.23518 1.01847 0.85876 0.87681 1.68162 1.07120 1.29036 1.20449 0.91039 0.87979 0.89573 0.92163 0.88552 0.91436 0.78123 0.74900 0.92332 0.90663 0.91435 0.93290 0.92429 0.93884 0.91940 0.97489 0.93475 0.94218 0.95972 0.93192 0.89715 0.92761 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 10.28 127.77 1.31 1.58 16 2 N -0.59 -6.44 3.37 -753.49 -2.54 -8.99 16 3 C 0.09 0.72 10.50 127.77 1.34 2.06 16 4 C 0.37 6.50 7.37 133.35 0.98 7.48 16 5 C 0.00 -0.01 10.42 85.15 0.89 0.88 16 6 N -0.39 -9.13 9.69 -183.79 -1.78 -10.91 16 7 C -0.08 -1.95 6.74 41.74 0.28 -1.67 16 8 C 0.58 17.23 7.80 86.78 0.68 17.91 16 9 O -0.57 -19.71 16.33 -3.91 -0.06 -19.77 16 10 N -0.70 -19.62 4.94 -466.00 -2.30 -21.92 16 11 C 0.14 3.96 4.56 86.38 0.39 4.36 16 12 C -0.05 -1.67 0.53 -52.15 -0.03 -1.70 16 13 C -0.14 -3.97 7.54 71.98 0.54 -3.43 16 14 C -0.12 -4.34 4.75 30.67 0.15 -4.19 16 15 C 0.18 8.61 4.84 86.36 0.42 9.03 16 16 N -0.61 -30.47 3.00 -699.08 -2.09 -32.57 16 17 C -0.26 -14.38 9.59 84.03 0.81 -13.58 16 18 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 19 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 20 N -0.93 -55.32 11.19 21.65 0.24 -55.08 16 21 Si 0.96 45.54 29.59 68.60 2.03 47.57 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.14 5.79 6.04 86.36 0.52 6.32 16 26 C -0.11 -3.63 4.91 30.67 0.15 -3.48 16 27 C 0.17 4.04 10.76 84.94 0.91 4.95 16 28 N -0.52 -11.21 9.22 -191.73 -1.77 -12.98 16 29 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.10 -0.04 8.07 -2.39 -0.02 -0.06 16 31 H 0.09 0.19 5.98 -2.39 -0.01 0.18 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.30 8.07 -2.39 -0.02 0.28 16 34 H 0.07 0.81 7.30 -2.39 -0.02 0.79 16 35 H 0.20 2.09 6.02 -2.91 -0.02 2.07 16 36 H 0.41 11.17 5.49 -92.71 -0.51 10.66 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 40 H 0.05 1.70 4.98 -2.39 -0.01 1.69 16 41 H 0.06 1.55 6.86 -2.39 -0.02 1.54 16 42 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 2.12 6.82 -2.39 -0.02 2.10 16 44 H 0.01 0.35 6.69 -2.39 -0.02 0.34 16 45 H 0.05 2.60 6.04 -2.38 -0.01 2.58 16 46 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.02 0.91 6.69 -2.39 -0.02 0.89 16 48 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 49 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.18 3.97 7.63 -2.91 -0.02 3.95 16 Total: -1.00 -72.30 396.11 1.93 -70.37 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.44 Total: 20.26 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 9.77 Total: 24.02 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -10.24 Total: -142.45 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.30 1.93 -70.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716884395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.953 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds