Wall clock time and date at job start Wed Apr 1 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30841 * 126.46568 * 2 1 4 4 N 1.28909 * 109.73886 * 179.78959 * 3 2 1 5 5 C 1.29836 * 109.47817 * 0.25843 * 4 3 2 6 6 N 1.34692 * 126.46526 * 180.13777 * 2 1 3 7 7 C 1.46254 * 128.84309 * 359.88869 * 6 2 1 8 8 C 1.53321 * 108.72678 * 197.34903 * 7 6 2 9 9 H 1.09006 * 109.45355 * 69.73349 * 8 7 6 10 10 C 1.50698 * 109.45596 * 189.66600 * 8 7 6 11 11 O 1.21281 * 120.00208 * 85.19511 * 10 8 7 12 12 N 1.34777 * 120.00239 * 265.19968 * 10 8 7 13 13 C 1.47032 * 125.64550 * 4.76805 * 12 10 8 14 14 C 1.54334 * 107.26481 * 178.85218 * 13 12 10 15 15 C 1.55163 * 103.01998 * 338.13721 * 14 13 12 16 16 H 1.08994 * 111.03462 * 277.22217 * 15 14 13 17 17 C 1.52997 * 111.00316 * 153.37881 * 15 14 13 18 18 C 1.53008 * 109.46792 * 72.80453 * 17 15 14 19 19 N 1.46498 * 109.47158 * 179.97438 * 18 17 15 20 20 C 1.36934 * 120.00080 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99999 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99910 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00257 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46864 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47261 * 119.99705 * 24 22 20 27 27 H 1.48496 * 109.46878 * 239.99597 * 24 22 20 28 28 C 1.47418 * 125.65205 * 185.07749 * 12 10 8 29 29 C 1.53142 * 109.57771 * 309.70097 * 8 7 6 30 30 C 1.50804 * 128.52054 * 179.85485 * 5 4 3 31 31 H 1.09002 * 109.47193 * 269.86306 * 1 2 3 32 32 H 1.09002 * 109.47194 * 29.85868 * 1 2 3 33 33 H 1.08995 * 109.47603 * 149.86123 * 1 2 3 34 34 H 1.09001 * 109.59567 * 317.11732 * 7 6 2 35 35 H 1.08995 * 109.60160 * 77.42636 * 7 6 2 36 36 H 1.09005 * 109.87868 * 298.39300 * 13 12 10 37 37 H 1.08995 * 109.88111 * 59.56078 * 13 12 10 38 38 H 1.08998 * 110.85046 * 219.67109 * 14 13 12 39 39 H 1.09000 * 110.51539 * 96.44744 * 14 13 12 40 40 H 1.08997 * 109.47085 * 192.80079 * 17 15 14 41 41 H 1.08999 * 109.47556 * 312.80760 * 17 15 14 42 42 H 1.08999 * 109.47333 * 300.00100 * 18 17 15 43 43 H 1.08999 * 109.46820 * 59.99856 * 18 17 15 44 44 H 0.97006 * 120.00068 * 0.02562 * 19 18 17 45 45 H 0.96998 * 120.00044 * 180.02562 * 23 22 20 46 46 H 1.09004 * 110.36581 * 322.92631 * 28 12 10 47 47 H 1.08999 * 110.37110 * 85.25210 * 28 12 10 48 48 H 1.09003 * 109.49699 * 189.38700 * 29 8 7 49 49 H 1.08997 * 109.49576 * 309.44988 * 29 8 7 50 50 H 1.09002 * 109.73025 * 76.27380 * 30 5 4 51 51 H 1.08999 * 109.77386 * 315.60907 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 0.0045 5 6 3.5815 -0.6156 0.0019 6 7 2.3075 -1.0832 -0.0026 7 6 1.9366 -2.4979 -0.0038 8 6 3.1531 -3.3261 0.4263 9 1 3.3555 -3.1520 1.4831 10 6 2.8679 -4.7892 0.2048 11 8 3.0636 -5.2873 -0.8836 12 7 2.3953 -5.5443 1.2162 13 6 2.0209 -5.0525 2.5503 14 6 1.5098 -6.2641 3.3583 15 6 1.1007 -7.2737 2.2534 16 1 0.1013 -7.0572 1.8763 17 6 1.1910 -8.7128 2.7649 18 6 0.0414 -8.9811 3.7383 19 7 0.1274 -10.3593 4.2277 20 6 -0.8024 -10.8297 5.1161 21 1 -1.5989 -10.1846 5.4563 22 6 -0.7205 -12.1354 5.5801 23 7 0.2505 -12.9214 5.1659 24 14 -1.9894 -12.7773 6.7916 25 1 -2.9696 -11.7043 7.0967 26 1 -2.6966 -13.9403 6.1979 27 1 -1.3102 -13.1974 8.0435 28 6 2.1741 -7.0011 1.1702 29 6 4.3735 -2.9134 -0.4016 30 6 4.8051 -1.4971 0.0023 31 1 -0.3634 -0.0025 1.0277 32 1 -0.3634 0.8913 -0.5116 33 1 -0.3634 -0.8887 -0.5159 34 1 1.1171 -2.6616 0.6961 35 1 1.6260 -2.7937 -1.0058 36 1 2.8905 -4.6166 3.0421 37 1 1.2300 -4.3077 2.4622 38 1 0.6487 -5.9889 3.9673 39 1 2.3073 -6.6733 3.9786 40 1 1.1231 -9.4024 1.9236 41 1 2.1421 -8.8573 3.2774 42 1 0.1092 -8.2915 4.5797 43 1 -0.9097 -8.8366 3.2258 44 1 0.8431 -10.9386 3.9223 45 1 0.3075 -13.8339 5.4899 46 1 1.8059 -7.2981 0.1882 47 1 3.0958 -7.5325 1.4073 48 1 5.1913 -3.6097 -0.2162 49 1 4.1164 -2.9278 -1.4607 50 1 5.2442 -1.5166 0.9997 51 1 5.5339 -1.1165 -0.7132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717111102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:30 Heat of formation + Delta-G solvation = 21.029038 kcal Electronic energy + Delta-G solvation = -30198.030680 eV Core-core repulsion = 26132.388538 eV Total energy + Delta-G solvation = -4065.642141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.39939 -41.46017 -39.27306 -37.75534 -36.83541 -35.15717 -34.58639 -32.91314 -32.39191 -31.47437 -30.61053 -28.93790 -28.31575 -26.40244 -25.53983 -24.42325 -23.70182 -23.04999 -22.36023 -21.26906 -21.02125 -19.94191 -19.14203 -18.50318 -17.97043 -17.51016 -17.22762 -16.69819 -16.33199 -16.08611 -15.85231 -15.43669 -15.33291 -15.28250 -15.15154 -14.91001 -14.71591 -14.38114 -14.02227 -13.91676 -13.79743 -13.48070 -13.38119 -13.29011 -13.10229 -13.03891 -12.86425 -12.76165 -12.62113 -12.40639 -12.26849 -12.13654 -12.07906 -11.94787 -11.61527 -11.54428 -11.48626 -11.37928 -11.16884 -11.02495 -10.91769 -10.04992 -9.73805 -8.98602 -7.95183 -5.23772 0.76317 1.17724 1.48326 1.48801 1.51272 1.58883 1.75594 1.85465 2.56497 3.05623 3.14328 3.27123 3.39145 3.41956 3.48752 3.57463 3.65296 3.81562 3.88075 3.94842 3.99545 4.18492 4.19220 4.25175 4.31099 4.36646 4.44125 4.49964 4.60911 4.62070 4.62919 4.65501 4.80337 4.80720 4.83500 4.86003 4.88409 4.95480 4.96424 4.98649 5.02999 5.10282 5.20846 5.21968 5.31017 5.41114 5.48195 5.51591 5.84953 6.27988 6.40240 6.96435 7.33816 7.65810 8.11880 8.32705 9.28696 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.001720 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.297465 B =16274.837161 C =17007.828388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.184 3.816 3 N -0.348 5.348 4 N -0.335 5.335 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.118 3.882 8 C -0.108 4.108 9 H 0.126 0.874 10 C 0.540 3.460 11 O -0.573 6.573 12 N -0.612 5.612 13 C 0.097 3.903 14 C -0.126 4.126 15 C -0.084 4.084 16 H 0.090 0.910 17 C -0.103 4.103 18 C 0.153 3.847 19 N -0.751 5.751 20 C -0.243 4.243 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.973 3.027 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.110 3.890 29 C -0.104 4.104 30 C -0.027 4.027 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.017 0.983 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.070 0.930 50 H 0.117 0.883 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 25.416 -9.728 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 N -0.188 5.188 4 N -0.174 5.174 5 C -0.093 4.093 6 N -0.159 5.159 7 C -0.004 4.004 8 C -0.130 4.130 9 H 0.144 0.856 10 C 0.328 3.672 11 O -0.452 6.452 12 N -0.344 5.344 13 C -0.025 4.025 14 C -0.164 4.164 15 C -0.104 4.104 16 H 0.109 0.891 17 C -0.142 4.142 18 C 0.027 3.973 19 N -0.394 5.394 20 C -0.375 4.375 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.802 3.198 25 H -0.188 1.188 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.013 4.013 29 C -0.142 4.142 30 C -0.066 4.066 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.088 0.912 50 H 0.136 0.864 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.371 26.707 -10.253 29.108 hybrid contribution -0.634 -2.365 0.396 2.480 sum 4.737 24.342 -9.856 26.686 Atomic orbital electron populations 1.20452 0.80753 1.05819 1.05641 1.25410 0.98579 0.82176 1.02275 1.74405 0.96674 1.25620 1.22058 1.73958 1.12884 1.09886 1.20638 1.25282 0.88409 0.92194 1.03441 1.46031 1.06592 1.08680 1.54608 1.21958 0.98151 0.74904 1.05405 1.21580 0.96557 0.90117 1.04727 0.85588 1.20082 0.76417 0.88137 0.82598 1.90748 1.53940 1.74932 1.25569 1.48622 1.63228 1.08748 1.13832 1.22355 1.01405 0.97605 0.81119 1.22757 1.02457 0.94121 0.97024 1.22166 0.98971 0.94094 0.95169 0.89133 1.21506 0.98526 0.95783 0.98356 1.20815 0.96269 0.85208 0.95005 1.42661 1.32928 1.10725 1.53041 1.19697 1.05315 0.95539 1.16951 0.90433 1.25594 1.00973 0.97241 1.03314 1.69819 1.35374 1.07387 1.49588 0.85077 0.78506 0.78034 0.78177 1.18823 1.22218 1.22074 1.22259 0.98816 0.80522 0.99689 1.21545 0.96885 0.95838 0.99974 1.20387 0.90083 0.90091 1.06015 0.87667 0.88361 0.88293 0.85406 0.88475 0.89089 0.88886 0.88548 0.90450 0.92532 0.91807 0.95279 0.96455 0.79591 0.94061 0.91385 0.91280 0.88239 0.91150 0.86444 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.28 71.23 0.73 0.24 16 2 C 0.18 3.07 8.07 138.14 1.11 4.18 16 3 N -0.35 -8.70 12.23 -50.46 -0.62 -9.32 16 4 N -0.34 -8.45 12.21 -50.28 -0.61 -9.06 16 5 C 0.18 3.06 7.75 138.14 1.07 4.13 16 6 N -0.47 -6.58 3.11 -504.67 -1.57 -8.15 16 7 C 0.12 0.99 6.02 86.53 0.52 1.51 16 8 C -0.11 -0.98 2.16 -11.39 -0.02 -1.01 16 9 H 0.13 0.65 6.94 -2.38 -0.02 0.63 16 10 C 0.54 8.44 6.81 87.66 0.60 9.04 16 11 O -0.57 -14.05 16.68 -3.03 -0.05 -14.10 16 12 N -0.61 -8.71 3.33 -811.75 -2.70 -11.41 16 13 C 0.10 0.83 6.15 86.73 0.53 1.36 16 14 C -0.13 -1.67 5.90 31.79 0.19 -1.48 16 15 C -0.08 -1.54 3.01 -9.40 -0.03 -1.56 16 16 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.10 -2.76 4.84 30.60 0.15 -2.61 16 18 C 0.15 5.43 6.16 86.38 0.53 5.97 16 19 N -0.75 -36.72 5.60 -343.45 -1.92 -38.65 16 20 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 23 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 24 Si 0.97 45.09 29.55 68.60 2.03 47.11 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 C 0.11 2.02 6.40 86.86 0.56 2.57 16 29 C -0.10 -1.02 4.78 30.80 0.15 -0.87 16 30 C -0.03 -0.26 6.34 30.04 0.19 -0.07 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.30 8.04 -2.39 -0.02 0.28 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.92 8.12 -2.39 -0.02 0.90 16 36 H 0.09 0.49 7.73 -2.38 -0.02 0.47 16 37 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.15 7.91 -2.39 -0.02 1.13 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.74 7.97 -2.39 -0.02 1.72 16 42 H 0.03 0.99 7.75 -2.39 -0.02 0.97 16 43 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 44 H 0.37 19.53 7.67 -92.70 -0.71 18.82 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.07 1.44 7.99 -2.38 -0.02 1.42 16 47 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 48 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 49 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 50 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.37 409.18 2.63 -77.73 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.21 Total: 19.18 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 7.58 Total: 5.03 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -7.14 Total: -134.97 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.05 Total: -14.10 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.37 2.63 -77.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717111102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.763 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds