Wall clock time and date at job start Wed Apr 1 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 126.46457 * 2 1 4 4 N 1.28909 * 109.73810 * 180.02562 * 3 2 1 5 5 C 1.29838 * 109.48179 * 0.02562 * 4 3 2 6 6 N 1.34693 * 126.46079 * 179.97438 * 2 1 3 7 7 C 1.46254 * 128.85015 * 359.88155 * 6 2 1 8 8 C 1.53320 * 108.72978 * 197.09381 * 7 6 2 9 9 H 1.08998 * 109.45644 * 69.72021 * 8 7 6 10 10 C 1.50698 * 109.45734 * 189.66413 * 8 7 6 11 11 O 1.21275 * 119.99969 * 85.12658 * 10 8 7 12 12 N 1.34776 * 119.99585 * 265.12115 * 10 8 7 13 13 C 1.47016 * 125.65235 * 5.10020 * 12 10 8 14 14 C 1.54324 * 107.27521 * 181.01636 * 13 12 10 15 15 C 1.55162 * 102.93723 * 22.19084 * 14 13 12 16 16 H 1.09004 * 111.00163 * 82.57516 * 15 14 13 17 17 C 1.53005 * 111.00108 * 206.38428 * 15 14 13 18 18 C 1.52999 * 109.46924 * 293.54567 * 17 15 14 19 19 N 1.46503 * 109.47029 * 179.97438 * 18 17 15 20 20 C 1.36933 * 120.00387 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99662 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00089 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00046 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99711 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47128 * 90.00129 * 24 22 20 26 26 H 1.48499 * 109.46781 * 209.99844 * 24 22 20 27 27 H 1.48498 * 109.47309 * 329.99909 * 24 22 20 28 28 C 1.47424 * 125.64370 * 184.78071 * 12 10 8 29 29 C 1.53152 * 109.57253 * 309.69340 * 8 7 6 30 30 C 1.50801 * 128.52900 * 179.83572 * 5 4 3 31 31 H 1.08998 * 109.47336 * 90.02196 * 1 2 3 32 32 H 1.09002 * 109.47159 * 210.02732 * 1 2 3 33 33 H 1.09003 * 109.46661 * 330.01997 * 1 2 3 34 34 H 1.09003 * 109.59956 * 316.86614 * 7 6 2 35 35 H 1.09003 * 109.59462 * 77.16820 * 7 6 2 36 36 H 1.09000 * 109.88322 * 300.43639 * 13 12 10 37 37 H 1.09010 * 109.88333 * 61.44124 * 13 12 10 38 38 H 1.08997 * 110.71664 * 140.55067 * 14 13 12 39 39 H 1.09001 * 110.72165 * 263.65262 * 14 13 12 40 40 H 1.08997 * 109.47189 * 53.54743 * 17 15 14 41 41 H 1.08997 * 109.46895 * 173.54868 * 17 15 14 42 42 H 1.08997 * 109.47331 * 300.00089 * 18 17 15 43 43 H 1.08997 * 109.47088 * 60.00420 * 18 17 15 44 44 H 0.97005 * 119.99695 * 0.02562 * 19 18 17 45 45 H 0.97003 * 119.99832 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.37436 * 274.75099 * 28 12 10 47 47 H 1.09003 * 110.36803 * 37.07761 * 28 12 10 48 48 H 1.09000 * 109.49733 * 189.38808 * 29 8 7 49 49 H 1.08997 * 109.50079 * 309.49468 * 29 8 7 50 50 H 1.09001 * 109.73032 * 76.24733 * 30 5 4 51 51 H 1.09005 * 109.76768 * 315.59422 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3074 -1.0833 0.0005 7 6 1.9366 -2.4980 0.0035 8 6 3.1550 -3.3255 0.4296 9 1 3.3623 -3.1493 1.4851 10 6 2.8688 -4.7889 0.2121 11 8 3.0586 -5.2886 -0.8765 12 7 2.4022 -5.5425 1.2274 13 6 2.0289 -5.0476 2.5605 14 6 1.5776 -6.2668 3.3921 15 6 2.2579 -7.4556 2.6631 16 1 3.2936 -7.5692 2.9833 17 6 1.4748 -8.7521 2.8794 18 6 1.5473 -9.1516 4.3546 19 7 0.7970 -10.3927 4.5619 20 6 0.7211 -10.9463 5.8121 21 1 1.2141 -10.4677 6.6453 22 6 0.0106 -12.1225 6.0083 23 7 -0.5906 -12.7054 4.9929 24 14 -0.0935 -12.8772 7.7139 25 1 -1.2794 -12.3345 8.4239 26 1 -0.2195 -14.3521 7.5957 27 1 1.1358 -12.5451 8.4781 28 6 2.1753 -6.9985 1.1830 29 6 4.3717 -2.9142 -0.4046 30 6 4.8051 -1.4972 -0.0057 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 1.1202 -2.6605 0.7072 35 1 1.6216 -2.7955 -0.9968 36 1 2.8887 -4.5737 3.0342 37 1 1.2116 -4.3314 2.4747 38 1 1.9361 -6.1876 4.4184 39 1 0.4924 -6.3678 3.3707 40 1 0.4336 -8.5995 2.5951 41 1 1.9064 -9.5438 2.2670 42 1 2.5884 -9.3042 4.6389 43 1 1.1157 -8.3600 4.9670 44 1 0.3545 -10.8227 3.8134 45 1 -1.0868 -13.5276 5.1300 46 1 1.1902 -7.2166 0.7706 47 1 2.9511 -7.4855 0.5921 48 1 5.1903 -3.6102 -0.2216 49 1 4.1097 -2.9298 -1.4625 50 1 5.2493 -1.5150 0.9895 51 1 5.5303 -1.1177 -0.7256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717111103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:35 Heat of formation + Delta-G solvation = 43.557137 kcal Electronic energy + Delta-G solvation = -30189.374999 eV Core-core repulsion = 26124.709750 eV Total energy + Delta-G solvation = -4064.665250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.74558 -40.76701 -38.52141 -37.08251 -35.28667 -34.59294 -33.21580 -32.04125 -31.27382 -30.72497 -29.75625 -27.91849 -27.54315 -25.61321 -24.27035 -23.41957 -23.07798 -21.87996 -21.55394 -20.39820 -20.30409 -19.28031 -17.94716 -17.40555 -17.14051 -16.88031 -16.30025 -15.97095 -15.47330 -14.97820 -14.87550 -14.76591 -14.52583 -14.34031 -14.07363 -13.79380 -13.62727 -13.50462 -13.28955 -13.23579 -13.11966 -12.81068 -12.75579 -12.51519 -12.35565 -11.95697 -11.79362 -11.77911 -11.61990 -11.43208 -11.17427 -10.88450 -10.76628 -10.70355 -10.60607 -10.57728 -10.43780 -10.29100 -10.06688 -9.74507 -9.36706 -9.05498 -8.92333 -6.97838 -5.81689 -3.10737 1.37346 1.77841 2.14463 2.46487 2.50470 3.39460 3.44601 3.46480 3.57826 3.70784 3.75702 3.86992 3.99701 4.24451 4.30937 4.39831 4.42710 4.46923 4.54810 4.58494 4.65555 4.69549 4.84959 4.91413 4.94812 5.05715 5.08905 5.20704 5.21847 5.25840 5.39717 5.44171 5.48427 5.50054 5.52166 5.53194 5.62187 5.69853 5.72871 5.78013 5.90220 5.98269 6.12641 6.26742 6.27858 6.39629 6.74618 6.79381 7.05051 7.63976 7.64430 8.35736 8.37282 9.48287 10.06315 10.40269 11.41160 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.576693 B =16480.418333 C =16936.781831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.298 5.298 4 N -0.289 5.289 5 C 0.176 3.824 6 N -0.469 5.469 7 C 0.119 3.881 8 C -0.119 4.119 9 H 0.105 0.895 10 C 0.537 3.463 11 O -0.530 6.530 12 N -0.614 5.614 13 C 0.096 3.904 14 C -0.127 4.127 15 C -0.093 4.093 16 H 0.086 0.914 17 C -0.116 4.116 18 C 0.155 3.845 19 N -0.735 5.735 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.109 3.891 29 C -0.109 4.109 30 C -0.033 4.033 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 23.779 -11.119 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.139 5.139 4 N -0.128 5.128 5 C -0.092 4.092 6 N -0.161 5.161 7 C -0.005 4.005 8 C -0.140 4.140 9 H 0.123 0.877 10 C 0.323 3.677 11 O -0.406 6.406 12 N -0.347 5.347 13 C -0.027 4.027 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.104 0.896 17 C -0.154 4.154 18 C 0.027 3.973 19 N -0.379 5.379 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.013 4.013 29 C -0.147 4.147 30 C -0.072 4.072 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.797 24.979 -11.589 28.363 hybrid contribution -0.753 -1.981 0.850 2.284 sum 6.043 22.998 -10.740 26.091 Atomic orbital electron populations 1.20243 0.83549 1.04683 1.04228 1.24711 0.97143 0.82647 1.04260 1.74510 0.96107 1.23578 1.19674 1.74068 1.12280 1.07961 1.18510 1.24741 0.86976 0.92575 1.04884 1.45919 1.07136 1.08023 1.55029 1.21801 0.97589 0.76406 1.04671 1.21633 0.96463 0.92434 1.03515 0.87718 1.19675 0.77331 0.87270 0.83400 1.90757 1.52265 1.73753 1.23786 1.48586 1.63747 1.09526 1.12863 1.22193 0.99788 0.98026 0.82682 1.22744 1.01873 0.92577 0.99295 1.22386 1.00776 0.95153 0.92974 0.89552 1.21673 0.99798 0.94935 0.99025 1.20617 0.95052 0.89551 0.92049 1.42371 1.61788 1.24967 1.08760 1.19220 1.26817 1.04402 0.86781 0.91205 1.24758 1.00626 0.98206 0.97462 1.69657 1.38576 1.20554 1.29384 0.86183 0.77703 0.78458 0.83806 1.21701 1.21725 1.20759 1.22469 1.02154 0.78847 0.97849 1.21596 0.96619 0.95724 1.00760 1.20260 0.91214 0.91029 1.04702 0.89430 0.90384 0.88465 0.88113 0.88196 0.91200 0.91496 0.89379 0.89858 0.91537 0.91425 0.96539 0.96304 0.78307 0.93478 0.90797 0.90182 0.88906 0.89681 0.88388 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.29 36.01 0.37 0.04 16 2 C 0.18 1.62 8.07 -155.45 -1.25 0.37 16 3 N -0.30 -3.74 12.23 32.70 0.40 -3.34 16 4 N -0.29 -3.65 12.21 32.76 0.40 -3.25 16 5 C 0.18 1.64 7.75 -155.29 -1.20 0.44 16 6 N -0.47 -3.77 3.11 -110.86 -0.35 -4.12 16 7 C 0.12 0.68 6.03 -4.01 -0.02 0.65 16 8 C -0.12 -0.71 2.16 -91.53 -0.20 -0.91 16 9 H 0.10 0.51 6.88 -51.93 -0.36 0.15 16 10 C 0.54 4.81 6.81 -10.99 -0.07 4.73 16 11 O -0.53 -6.72 16.74 5.56 0.09 -6.63 16 12 N -0.61 -5.22 3.32 -170.38 -0.57 -5.78 16 13 C 0.10 0.62 6.20 -3.07 -0.02 0.60 16 14 C -0.13 -1.06 5.59 -24.89 -0.14 -1.20 16 15 C -0.09 -0.94 3.08 -88.35 -0.27 -1.22 16 16 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.12 -1.60 4.85 -26.73 -0.13 -1.73 16 18 C 0.15 2.83 6.11 -4.04 -0.02 2.81 16 19 N -0.73 -17.98 5.60 -59.91 -0.34 -18.31 16 20 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.11 1.07 6.36 -2.41 -0.02 1.06 16 29 C -0.11 -0.64 4.78 -26.42 -0.13 -0.76 16 30 C -0.03 -0.19 6.33 -27.60 -0.17 -0.36 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.23 7.76 -51.93 -0.40 -0.17 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.39 7.85 -51.93 -0.41 -0.02 16 35 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.07 0.36 7.63 -51.93 -0.40 -0.03 16 37 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.09 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 40 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.34 7.51 -51.93 -0.39 -0.05 16 44 H 0.38 9.88 7.67 -40.82 -0.31 9.57 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 47 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 48 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 49 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -36.02 408.35 -10.59 -46.61 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.56 Total: 1.53 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.53 Total: -2.74 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.28 Total: -61.87 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.09 Total: -6.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.02 -10.59 -46.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717111103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.164 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds