Wall clock time and date at job start Wed Apr 1 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 126.46457 * 2 1 4 4 N 1.28909 * 109.73810 * 180.02562 * 3 2 1 5 5 C 1.29838 * 109.48179 * 0.02562 * 4 3 2 6 6 N 1.34693 * 126.46079 * 179.97438 * 2 1 3 7 7 C 1.46254 * 128.85015 * 359.88155 * 6 2 1 8 8 C 1.53320 * 108.72978 * 197.09381 * 7 6 2 9 9 H 1.08998 * 109.45644 * 69.72021 * 8 7 6 10 10 C 1.50698 * 109.45734 * 189.66413 * 8 7 6 11 11 O 1.21275 * 119.99969 * 85.12658 * 10 8 7 12 12 N 1.34776 * 119.99585 * 265.12115 * 10 8 7 13 13 C 1.47016 * 125.65235 * 5.10020 * 12 10 8 14 14 C 1.54324 * 107.27521 * 181.01636 * 13 12 10 15 15 C 1.55162 * 102.93723 * 22.19084 * 14 13 12 16 16 H 1.09004 * 111.00163 * 82.57516 * 15 14 13 17 17 C 1.53005 * 111.00108 * 206.38428 * 15 14 13 18 18 C 1.52999 * 109.46924 * 293.54567 * 17 15 14 19 19 N 1.46503 * 109.47029 * 179.97438 * 18 17 15 20 20 C 1.36933 * 120.00387 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99662 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00089 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00046 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99711 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47128 * 90.00129 * 24 22 20 26 26 H 1.48499 * 109.46781 * 209.99844 * 24 22 20 27 27 H 1.48498 * 109.47309 * 329.99909 * 24 22 20 28 28 C 1.47424 * 125.64370 * 184.78071 * 12 10 8 29 29 C 1.53152 * 109.57253 * 309.69340 * 8 7 6 30 30 C 1.50801 * 128.52900 * 179.83572 * 5 4 3 31 31 H 1.08998 * 109.47336 * 90.02196 * 1 2 3 32 32 H 1.09002 * 109.47159 * 210.02732 * 1 2 3 33 33 H 1.09003 * 109.46661 * 330.01997 * 1 2 3 34 34 H 1.09003 * 109.59956 * 316.86614 * 7 6 2 35 35 H 1.09003 * 109.59462 * 77.16820 * 7 6 2 36 36 H 1.09000 * 109.88322 * 300.43639 * 13 12 10 37 37 H 1.09010 * 109.88333 * 61.44124 * 13 12 10 38 38 H 1.08997 * 110.71664 * 140.55067 * 14 13 12 39 39 H 1.09001 * 110.72165 * 263.65262 * 14 13 12 40 40 H 1.08997 * 109.47189 * 53.54743 * 17 15 14 41 41 H 1.08997 * 109.46895 * 173.54868 * 17 15 14 42 42 H 1.08997 * 109.47331 * 300.00089 * 18 17 15 43 43 H 1.08997 * 109.47088 * 60.00420 * 18 17 15 44 44 H 0.97005 * 119.99695 * 0.02562 * 19 18 17 45 45 H 0.97003 * 119.99832 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.37436 * 274.75099 * 28 12 10 47 47 H 1.09003 * 110.36803 * 37.07761 * 28 12 10 48 48 H 1.09000 * 109.49733 * 189.38808 * 29 8 7 49 49 H 1.08997 * 109.50079 * 309.49468 * 29 8 7 50 50 H 1.09001 * 109.73032 * 76.24733 * 30 5 4 51 51 H 1.09005 * 109.76768 * 315.59422 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3074 -1.0833 0.0005 7 6 1.9366 -2.4980 0.0035 8 6 3.1550 -3.3255 0.4296 9 1 3.3623 -3.1493 1.4851 10 6 2.8688 -4.7889 0.2121 11 8 3.0586 -5.2886 -0.8765 12 7 2.4022 -5.5425 1.2274 13 6 2.0289 -5.0476 2.5605 14 6 1.5776 -6.2668 3.3921 15 6 2.2579 -7.4556 2.6631 16 1 3.2936 -7.5692 2.9833 17 6 1.4748 -8.7521 2.8794 18 6 1.5473 -9.1516 4.3546 19 7 0.7970 -10.3927 4.5619 20 6 0.7211 -10.9463 5.8121 21 1 1.2141 -10.4677 6.6453 22 6 0.0106 -12.1225 6.0083 23 7 -0.5906 -12.7054 4.9929 24 14 -0.0935 -12.8772 7.7139 25 1 -1.2794 -12.3345 8.4239 26 1 -0.2195 -14.3521 7.5957 27 1 1.1358 -12.5451 8.4781 28 6 2.1753 -6.9985 1.1830 29 6 4.3717 -2.9142 -0.4046 30 6 4.8051 -1.4972 -0.0057 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3633 0.8902 0.5135 34 1 1.1202 -2.6605 0.7072 35 1 1.6216 -2.7955 -0.9968 36 1 2.8887 -4.5737 3.0342 37 1 1.2116 -4.3314 2.4747 38 1 1.9361 -6.1876 4.4184 39 1 0.4924 -6.3678 3.3707 40 1 0.4336 -8.5995 2.5951 41 1 1.9064 -9.5438 2.2670 42 1 2.5884 -9.3042 4.6389 43 1 1.1157 -8.3600 4.9670 44 1 0.3545 -10.8227 3.8134 45 1 -1.0868 -13.5276 5.1300 46 1 1.1902 -7.2166 0.7706 47 1 2.9511 -7.4855 0.5921 48 1 5.1903 -3.6102 -0.2216 49 1 4.1097 -2.9298 -1.4625 50 1 5.2493 -1.5150 0.9895 51 1 5.5303 -1.1177 -0.7256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717111103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:34 Heat of formation + Delta-G solvation = 21.300179 kcal Electronic energy + Delta-G solvation = -30190.340134 eV Core-core repulsion = 26124.709750 eV Total energy + Delta-G solvation = -4065.630384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.40017 -41.45939 -39.27713 -37.75725 -36.82973 -35.16007 -34.58649 -32.90526 -32.38967 -31.47273 -30.60428 -28.93481 -28.31846 -26.40752 -25.53863 -24.40624 -23.71804 -23.08262 -22.35647 -21.25532 -21.00465 -19.90640 -19.12447 -18.56689 -17.95290 -17.52624 -17.11687 -16.71865 -16.55030 -16.10066 -15.74565 -15.41590 -15.35352 -15.22960 -15.18988 -14.84763 -14.67057 -14.40271 -14.07606 -13.92898 -13.88780 -13.46127 -13.30854 -13.27036 -13.06881 -13.06399 -12.86370 -12.75497 -12.62046 -12.34122 -12.30710 -12.17556 -12.09874 -11.93511 -11.61981 -11.55365 -11.47789 -11.38336 -11.17235 -11.02276 -10.90362 -10.05249 -9.74151 -8.98278 -7.94774 -5.23355 0.76354 1.17623 1.48373 1.49817 1.51072 1.58283 1.75561 1.85473 2.56821 3.05599 3.14744 3.26879 3.39349 3.41540 3.48700 3.57057 3.64834 3.80614 3.89189 3.95452 4.01882 4.15390 4.18446 4.24605 4.29736 4.36710 4.45459 4.49454 4.60623 4.62129 4.62867 4.64293 4.80466 4.81458 4.83524 4.86149 4.88291 4.95490 4.96858 4.98548 5.03010 5.10026 5.20661 5.22443 5.30468 5.40840 5.48634 5.51471 5.84710 6.28208 6.40297 6.96462 7.34103 7.65669 8.12208 8.33119 9.28868 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.576693 B =16480.418333 C =16936.781831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.183 3.817 3 N -0.348 5.348 4 N -0.335 5.335 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.118 3.882 8 C -0.108 4.108 9 H 0.126 0.874 10 C 0.539 3.461 11 O -0.573 6.573 12 N -0.612 5.612 13 C 0.097 3.903 14 C -0.126 4.126 15 C -0.085 4.085 16 H 0.090 0.910 17 C -0.103 4.103 18 C 0.153 3.847 19 N -0.751 5.751 20 C -0.244 4.244 21 H 0.077 0.923 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.111 3.889 29 C -0.104 4.104 30 C -0.027 4.027 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.030 0.970 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.118 0.882 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 24.807 -9.769 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 N -0.187 5.187 4 N -0.174 5.174 5 C -0.093 4.093 6 N -0.159 5.159 7 C -0.004 4.004 8 C -0.130 4.130 9 H 0.144 0.856 10 C 0.328 3.672 11 O -0.452 6.452 12 N -0.344 5.344 13 C -0.025 4.025 14 C -0.164 4.164 15 C -0.104 4.104 16 H 0.108 0.892 17 C -0.142 4.142 18 C 0.027 3.973 19 N -0.393 5.393 20 C -0.376 4.376 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.194 1.194 28 C -0.012 4.012 29 C -0.142 4.142 30 C -0.066 4.066 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.088 0.912 50 H 0.136 0.864 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.945 26.062 -10.209 28.839 hybrid contribution -0.773 -2.297 0.396 2.456 sum 6.172 23.765 -9.814 26.441 Atomic orbital electron populations 1.20455 0.80774 1.06075 1.05354 1.25404 0.98577 0.82190 1.02301 1.74405 0.96673 1.25611 1.22057 1.73957 1.12877 1.09889 1.20630 1.25291 0.88401 0.92189 1.03438 1.46033 1.06606 1.08673 1.54594 1.21958 0.98122 0.74928 1.05411 1.21579 0.96550 0.90127 1.04749 0.85569 1.20075 0.76360 0.88175 0.82633 1.90748 1.54084 1.74777 1.25556 1.48627 1.63277 1.08788 1.13735 1.22352 1.01597 0.97464 0.81066 1.22740 1.01455 0.92383 0.99800 1.22211 1.00491 0.94020 0.93708 0.89194 1.21499 1.00294 0.96604 0.95763 1.20815 0.94001 0.87376 0.95124 1.42653 1.62334 1.26771 1.07585 1.19655 1.25622 1.04255 0.88076 0.90479 1.25592 1.01206 0.99178 1.01114 1.69815 1.39969 1.20934 1.31412 0.85141 0.78061 0.76948 0.79631 1.21312 1.22377 1.19358 1.22295 1.01539 0.80085 0.97238 1.21542 0.96925 0.95832 0.99918 1.20386 0.90062 0.90086 1.06047 0.88326 0.87877 0.88152 0.85460 0.88481 0.89000 0.89004 0.88720 0.90309 0.91808 0.92524 0.96522 0.95180 0.79592 0.94061 0.91234 0.91429 0.88198 0.91164 0.86438 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.29 71.24 0.73 0.24 16 2 C 0.18 3.08 8.07 138.14 1.11 4.19 16 3 N -0.35 -8.72 12.23 -50.46 -0.62 -9.33 16 4 N -0.34 -8.46 12.21 -50.27 -0.61 -9.07 16 5 C 0.18 3.07 7.75 138.14 1.07 4.14 16 6 N -0.47 -6.61 3.11 -504.65 -1.57 -8.18 16 7 C 0.12 1.00 6.03 86.53 0.52 1.53 16 8 C -0.11 -0.99 2.16 -11.38 -0.02 -1.01 16 9 H 0.13 0.65 6.88 -2.39 -0.02 0.63 16 10 C 0.54 8.44 6.81 87.66 0.60 9.04 16 11 O -0.57 -14.02 16.74 -3.01 -0.05 -14.07 16 12 N -0.61 -8.72 3.32 -811.36 -2.70 -11.42 16 13 C 0.10 0.84 6.20 86.73 0.54 1.38 16 14 C -0.13 -1.70 5.59 31.78 0.18 -1.52 16 15 C -0.08 -1.56 3.08 -9.32 -0.03 -1.59 16 16 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.10 -2.76 4.85 30.60 0.15 -2.61 16 18 C 0.15 5.43 6.11 86.38 0.53 5.96 16 19 N -0.75 -36.71 5.60 -343.46 -1.92 -38.63 16 20 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 21 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 24 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.11 2.04 6.36 86.93 0.55 2.59 16 29 C -0.10 -1.01 4.78 30.80 0.15 -0.87 16 30 C -0.03 -0.26 6.33 30.03 0.19 -0.07 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.23 7.76 -2.39 -0.02 0.21 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.13 0.42 7.85 -2.39 -0.02 0.40 16 35 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 36 H 0.09 0.48 7.63 -2.39 -0.02 0.46 16 37 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.08 1.17 8.02 -2.39 -0.02 1.15 16 40 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.03 1.02 7.51 -2.39 -0.02 1.00 16 44 H 0.37 19.51 7.67 -92.70 -0.71 18.80 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 47 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 48 H 0.10 0.87 8.11 -2.39 -0.02 0.85 16 49 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 50 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -80.20 408.35 2.62 -77.58 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.22 Total: 19.37 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 7.57 Total: 4.97 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -7.14 Total: -134.94 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.05 Total: -14.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.20 2.62 -77.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717111103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.879 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds