Wall clock time and date at job start Wed Apr 1 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99432 * 2 1 4 4 C 1.52997 * 109.46934 * 125.00052 * 3 2 1 5 5 N 1.46504 * 109.47233 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59462 * 125.24144 * 5 4 3 7 7 C 1.36595 * 106.83813 * 180.13181 * 6 5 4 8 8 C 1.47522 * 125.76822 * 179.89549 * 7 6 5 9 9 O 1.21592 * 120.00270 * 359.72212 * 8 7 6 10 10 N 1.34784 * 119.99995 * 179.71806 * 8 7 6 11 11 C 1.46497 * 120.00065 * 179.72608 * 10 8 7 12 12 C 1.52998 * 109.47138 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.49754 * 299.93667 * 12 11 10 14 14 C 1.53035 * 109.49837 * 179.84018 * 12 11 10 15 15 C 1.53047 * 109.53837 * 178.68366 * 14 12 11 16 16 C 1.53194 * 109.31105 * 61.36319 * 15 14 12 17 17 N 1.46926 * 108.77457 * 305.36632 * 16 15 14 18 18 C 1.36942 * 120.62806 * 233.62898 * 17 16 15 19 19 H 1.07997 * 119.99696 * 27.66591 * 18 17 16 20 20 C 1.38809 * 120.00022 * 207.67135 * 18 17 16 21 21 N 1.31618 * 119.99954 * 17.36075 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 197.36135 * 20 18 17 23 23 H 1.48500 * 109.47163 * 90.00149 * 22 20 18 24 24 H 1.48498 * 109.47122 * 209.99703 * 22 20 18 25 25 H 1.48499 * 109.47188 * 330.00103 * 22 20 18 26 26 C 1.46924 * 118.73991 * 53.61127 * 17 16 15 27 27 N 1.34398 * 108.45847 * 359.63985 * 7 6 5 28 28 N 1.28760 * 109.52353 * 0.22291 * 27 7 6 29 29 H 1.07999 * 120.00652 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99381 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00652 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47528 * 4.99970 * 3 2 1 33 33 H 1.08995 * 109.46811 * 244.99560 * 3 2 1 34 34 H 1.09002 * 109.47382 * 59.99556 * 4 3 2 35 35 H 1.09004 * 109.47164 * 299.99980 * 4 3 2 36 36 H 1.08001 * 126.58481 * 359.97438 * 6 5 4 37 37 H 0.96998 * 119.99251 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47144 * 300.00096 * 11 10 8 39 39 H 1.09005 * 109.46902 * 60.00409 * 11 10 8 40 40 H 1.09006 * 109.47291 * 60.00322 * 13 12 11 41 41 H 1.09000 * 109.47349 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47266 * 300.00094 * 13 12 11 43 43 H 1.08998 * 109.46016 * 298.70097 * 14 12 11 44 44 H 1.08996 * 109.46197 * 58.66698 * 14 12 11 45 45 H 1.08992 * 109.49541 * 301.41342 * 15 14 12 46 46 H 1.08995 * 109.52259 * 181.32956 * 15 14 12 47 47 H 1.09002 * 109.58752 * 185.57771 * 16 15 14 48 48 H 1.09005 * 109.58452 * 65.15359 * 16 15 14 49 49 H 0.97001 * 120.00032 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.58564 * 186.60192 * 26 17 16 51 51 H 1.08999 * 109.58549 * 66.17579 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1816 5 7 3.7677 2.6018 1.1813 6 6 3.8529 3.4810 2.1997 7 6 4.6287 4.5174 1.7640 8 6 4.9899 5.7134 2.5484 9 8 4.5833 5.8390 3.6875 10 7 5.7708 6.6668 2.0027 11 6 6.1246 7.8573 2.7796 12 6 7.0111 8.7735 1.9337 13 6 8.2867 8.0269 1.5382 14 6 7.3778 10.0193 2.7433 15 6 8.2913 10.9209 1.9098 16 6 7.5477 11.3666 0.6467 17 7 7.0653 10.1744 -0.0635 18 6 7.3674 9.9796 -1.3850 19 1 8.2713 10.4005 -1.7999 20 6 6.5118 9.2413 -2.1910 21 7 5.2728 9.0197 -1.8062 22 14 7.1189 8.5622 -3.8218 23 1 7.6892 7.2072 -3.6123 24 1 5.9846 8.4795 -4.7766 25 1 8.1656 9.4599 -4.3730 26 6 6.2530 9.1949 0.6709 27 7 5.0119 4.2606 0.5016 28 7 4.5196 3.1325 0.1235 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.7399 0.5068 1.0921 35 1 2.4771 1.2357 2.1130 36 1 3.3936 3.3856 3.1726 37 1 6.0949 6.5666 1.0939 38 1 5.2166 8.3902 3.0616 39 1 6.6640 7.5577 3.6781 40 1 8.0246 7.1406 0.9603 41 1 8.9177 8.6798 0.9352 42 1 8.8263 7.7283 2.4369 43 1 6.4699 10.5634 3.0036 44 1 7.8958 9.7206 3.6546 45 1 9.1882 10.3693 1.6283 46 1 8.5714 11.7966 2.4952 47 1 8.2253 11.9267 0.0023 48 1 6.7009 11.9946 0.9238 49 1 4.6750 8.5035 -2.3693 50 1 6.0763 8.3220 0.0424 51 1 5.3006 9.6458 0.9498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724341071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:46 Heat of formation + Delta-G solvation = 92.579150 kcal Electronic energy + Delta-G solvation = -31006.069412 eV Core-core repulsion = 26943.529917 eV Total energy + Delta-G solvation = -4062.539496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.20568 -39.42650 -38.12851 -36.71066 -34.72437 -33.99822 -33.09910 -31.44780 -30.92144 -29.85043 -29.50438 -26.52167 -25.75210 -25.21906 -24.81453 -23.17269 -22.04596 -21.90762 -20.53930 -20.34380 -20.00980 -18.31325 -17.60122 -16.64323 -16.34721 -16.25169 -15.76877 -15.64574 -15.09347 -14.78283 -14.65327 -14.24959 -14.01483 -13.83360 -13.67169 -13.45436 -13.30342 -13.10432 -13.00750 -12.66183 -12.24612 -12.19795 -12.12826 -11.90318 -11.61873 -11.54887 -11.23543 -11.18725 -10.88473 -10.78079 -10.58223 -10.48021 -10.32560 -10.11181 -10.02798 -9.92201 -9.86995 -9.74610 -9.48302 -9.31168 -9.29299 -8.61884 -8.39842 -6.59945 -5.72254 -3.14425 1.09142 1.68348 1.83297 1.98580 3.44238 3.45633 3.51155 3.52438 3.53479 4.05857 4.20210 4.29384 4.49190 4.55657 4.70832 4.75616 4.77676 4.96790 5.10856 5.20416 5.31620 5.37216 5.44835 5.51570 5.52803 5.59252 5.65667 5.79885 5.83610 6.03087 6.10747 6.11282 6.16362 6.20555 6.23984 6.27443 6.31711 6.48168 6.49785 6.60650 6.70037 6.80780 6.89772 6.94871 7.03958 7.11660 7.37271 7.66832 7.78051 7.85709 8.05577 8.47154 8.50596 9.27391 9.90952 10.47894 11.35454 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.002880 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.646201 B = 9719.059344 C =11655.569597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C -0.108 4.108 4 C 0.128 3.872 5 N -0.366 5.366 6 C 0.089 3.911 7 C -0.096 4.096 8 C 0.601 3.399 9 O -0.553 6.553 10 N -0.699 5.699 11 C 0.136 3.864 12 C -0.103 4.103 13 C -0.127 4.127 14 C -0.094 4.094 15 C -0.135 4.135 16 C 0.144 3.856 17 N -0.588 5.588 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.184 3.816 27 N -0.194 5.194 28 N -0.064 5.064 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.016 0.984 49 H 0.253 0.747 50 H 0.091 0.909 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -15.719 9.780 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C -0.146 4.146 4 C 0.007 3.993 5 N -0.151 5.151 6 C -0.068 4.068 7 C -0.235 4.235 8 C 0.385 3.615 9 O -0.431 6.431 10 N -0.349 5.349 11 C 0.012 3.988 12 C -0.105 4.105 13 C -0.184 4.184 14 C -0.132 4.132 15 C -0.175 4.175 16 C 0.017 3.983 17 N -0.310 5.310 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.057 3.943 27 N -0.068 5.068 28 N -0.044 5.044 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.220 0.780 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.969 -15.914 9.024 18.958 hybrid contribution -0.170 -0.491 -0.325 0.613 sum -5.139 -16.405 8.699 19.267 Atomic orbital electron populations 1.23965 0.95903 1.02300 0.99620 1.22741 0.96007 0.97636 1.01247 1.21042 0.98096 0.96743 0.98751 1.21982 0.94400 0.81497 1.01417 1.50570 1.36099 1.17506 1.10938 1.23325 0.98680 0.89505 0.95304 1.21566 1.08334 1.00155 0.93460 1.16734 0.78579 0.81107 0.85080 1.90763 1.55665 1.78910 1.17773 1.45907 1.49989 1.20048 1.18998 1.21438 0.98871 0.84754 0.93697 1.21544 0.96378 0.94198 0.98422 1.21731 0.97020 0.99910 0.99767 1.21338 0.99279 0.95694 0.96921 1.22052 0.99138 0.98255 0.98009 1.20923 0.95603 0.89797 0.91959 1.43971 1.61031 1.18588 1.07407 1.19141 1.02484 1.31436 0.85099 0.91781 1.24992 0.94613 1.02212 0.97535 1.70016 1.03679 1.42258 1.38302 0.86370 0.77726 0.79444 0.83729 1.21233 1.21893 1.20623 1.20823 0.90229 0.94568 0.88652 1.74757 1.14974 1.07041 1.09990 1.82018 1.08965 1.05137 1.08272 0.88329 0.88060 0.86756 0.90438 0.88908 0.88294 0.87680 0.78019 0.74750 0.91623 0.92031 0.93470 0.90955 0.94563 0.92572 0.93407 0.91952 0.93273 0.92998 0.96644 0.93642 0.89123 0.96484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 14.32 29.02 0.42 -0.55 16 2 C -0.16 -0.84 9.52 -36.02 -0.34 -1.19 16 3 C -0.11 -0.74 5.86 -27.88 -0.16 -0.90 16 4 C 0.13 0.80 6.52 -4.04 -0.03 0.77 16 5 N -0.37 -3.98 3.69 -61.06 -0.23 -4.21 16 6 C 0.09 1.03 11.27 -16.84 -0.19 0.84 16 7 C -0.10 -1.50 6.99 -83.55 -0.58 -2.09 16 8 C 0.60 10.47 7.82 -12.47 -0.10 10.37 16 9 O -0.55 -10.32 16.86 5.28 0.09 -10.23 16 10 N -0.70 -12.45 4.99 -61.35 -0.31 -12.76 16 11 C 0.14 2.34 4.57 -4.04 -0.02 2.33 16 12 C -0.10 -1.89 0.53 -154.39 -0.08 -1.97 16 13 C -0.13 -2.28 7.81 37.16 0.29 -1.99 16 14 C -0.09 -1.56 4.71 -26.69 -0.13 -1.69 16 15 C -0.14 -2.31 5.74 -26.61 -0.15 -2.46 16 16 C 0.14 2.98 6.52 -3.71 -0.02 2.95 16 17 N -0.59 -14.31 2.43 -172.32 -0.42 -14.73 16 18 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 19 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 21 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 22 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.18 4.23 3.73 -3.71 -0.01 4.21 16 27 N -0.19 -3.35 12.04 32.85 0.40 -2.95 16 28 N -0.06 -0.96 13.65 60.35 0.82 -0.14 16 29 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 30 H 0.10 0.43 8.06 -52.48 -0.42 0.00 16 31 H 0.11 0.47 8.06 -52.49 -0.42 0.04 16 32 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.41 7.88 5.91 -40.82 -0.24 7.64 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.87 6.87 -51.93 -0.36 0.52 16 41 H 0.07 1.41 5.97 -51.93 -0.31 1.10 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.09 2.32 4.93 -51.93 -0.26 2.06 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 409.62 15.07 6.17 6.17 Total: -1.00 -32.55 409.62 -7.41 -39.96 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.19 Total: 5.46 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.34 Total: 1.78 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.89 Total: -60.04 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.55 -7.41 -39.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724341071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.540 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds