Wall clock time and date at job start Wed Apr 1 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50709 * 119.99432 * 2 1 4 4 C 1.52997 * 109.46934 * 125.00052 * 3 2 1 5 5 N 1.46504 * 109.47233 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59462 * 125.24144 * 5 4 3 7 7 C 1.36595 * 106.83813 * 180.13181 * 6 5 4 8 8 C 1.47522 * 125.76822 * 179.89549 * 7 6 5 9 9 O 1.21592 * 120.00270 * 359.72212 * 8 7 6 10 10 N 1.34784 * 119.99995 * 179.71806 * 8 7 6 11 11 C 1.46497 * 120.00065 * 179.72608 * 10 8 7 12 12 C 1.52998 * 109.47138 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.49754 * 299.93667 * 12 11 10 14 14 C 1.53035 * 109.49837 * 179.84018 * 12 11 10 15 15 C 1.53047 * 109.53837 * 178.68366 * 14 12 11 16 16 C 1.53194 * 109.31105 * 61.36319 * 15 14 12 17 17 N 1.46926 * 108.77457 * 305.36632 * 16 15 14 18 18 C 1.36942 * 120.62806 * 233.62898 * 17 16 15 19 19 H 1.07997 * 119.99696 * 27.66591 * 18 17 16 20 20 C 1.38809 * 120.00022 * 207.67135 * 18 17 16 21 21 N 1.31618 * 119.99954 * 17.36075 * 20 18 17 22 22 Si 1.86798 * 120.00053 * 197.36135 * 20 18 17 23 23 H 1.48500 * 109.47163 * 90.00149 * 22 20 18 24 24 H 1.48498 * 109.47122 * 209.99703 * 22 20 18 25 25 H 1.48499 * 109.47188 * 330.00103 * 22 20 18 26 26 C 1.46924 * 118.73991 * 53.61127 * 17 16 15 27 27 N 1.34398 * 108.45847 * 359.63985 * 7 6 5 28 28 N 1.28760 * 109.52353 * 0.22291 * 27 7 6 29 29 H 1.07999 * 120.00652 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99381 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00652 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47528 * 4.99970 * 3 2 1 33 33 H 1.08995 * 109.46811 * 244.99560 * 3 2 1 34 34 H 1.09002 * 109.47382 * 59.99556 * 4 3 2 35 35 H 1.09004 * 109.47164 * 299.99980 * 4 3 2 36 36 H 1.08001 * 126.58481 * 359.97438 * 6 5 4 37 37 H 0.96998 * 119.99251 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.47144 * 300.00096 * 11 10 8 39 39 H 1.09005 * 109.46902 * 60.00409 * 11 10 8 40 40 H 1.09006 * 109.47291 * 60.00322 * 13 12 11 41 41 H 1.09000 * 109.47349 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47266 * 300.00094 * 13 12 11 43 43 H 1.08998 * 109.46016 * 298.70097 * 14 12 11 44 44 H 1.08996 * 109.46197 * 58.66698 * 14 12 11 45 45 H 1.08992 * 109.49541 * 301.41342 * 15 14 12 46 46 H 1.08995 * 109.52259 * 181.32956 * 15 14 12 47 47 H 1.09002 * 109.58752 * 185.57771 * 16 15 14 48 48 H 1.09005 * 109.58452 * 65.15359 * 16 15 14 49 49 H 0.97001 * 120.00032 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.58564 * 186.60192 * 26 17 16 51 51 H 1.08999 * 109.58549 * 66.17579 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1816 5 7 3.7677 2.6018 1.1813 6 6 3.8529 3.4810 2.1997 7 6 4.6287 4.5174 1.7640 8 6 4.9899 5.7134 2.5484 9 8 4.5833 5.8390 3.6875 10 7 5.7708 6.6668 2.0027 11 6 6.1246 7.8573 2.7796 12 6 7.0111 8.7735 1.9337 13 6 8.2867 8.0269 1.5382 14 6 7.3778 10.0193 2.7433 15 6 8.2913 10.9209 1.9098 16 6 7.5477 11.3666 0.6467 17 7 7.0653 10.1744 -0.0635 18 6 7.3674 9.9796 -1.3850 19 1 8.2713 10.4005 -1.7999 20 6 6.5118 9.2413 -2.1910 21 7 5.2728 9.0197 -1.8062 22 14 7.1189 8.5622 -3.8218 23 1 7.6892 7.2072 -3.6123 24 1 5.9846 8.4795 -4.7766 25 1 8.1656 9.4599 -4.3730 26 6 6.2530 9.1949 0.6709 27 7 5.0119 4.2606 0.5016 28 7 4.5196 3.1325 0.1235 29 1 -0.5401 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9313 34 1 3.7399 0.5068 1.0921 35 1 2.4771 1.2357 2.1130 36 1 3.3936 3.3856 3.1726 37 1 6.0949 6.5666 1.0939 38 1 5.2166 8.3902 3.0616 39 1 6.6640 7.5577 3.6781 40 1 8.0246 7.1406 0.9603 41 1 8.9177 8.6798 0.9352 42 1 8.8263 7.7283 2.4369 43 1 6.4699 10.5634 3.0036 44 1 7.8958 9.7206 3.6546 45 1 9.1882 10.3693 1.6283 46 1 8.5714 11.7966 2.4952 47 1 8.2253 11.9267 0.0023 48 1 6.7009 11.9946 0.9238 49 1 4.6750 8.5035 -2.3693 50 1 6.0763 8.3220 0.0424 51 1 5.3006 9.6458 0.9498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724341071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:45 Heat of formation + Delta-G solvation = 71.986843 kcal Electronic energy + Delta-G solvation = -31006.962362 eV Core-core repulsion = 26943.529917 eV Total energy + Delta-G solvation = -4063.432445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.25120 -40.85288 -39.63109 -37.33656 -36.30999 -34.95912 -34.65388 -33.00575 -32.04221 -31.56073 -30.29879 -27.98872 -27.38864 -26.94989 -25.57844 -24.45662 -23.73634 -22.81092 -22.06744 -21.28088 -20.77415 -19.72791 -18.91844 -18.46772 -17.34634 -17.21132 -17.08372 -16.74213 -16.26419 -16.16165 -15.79569 -15.65282 -15.36755 -15.20674 -15.03615 -14.85575 -14.72045 -14.32342 -13.98792 -13.76999 -13.72838 -13.66072 -13.15292 -13.08001 -12.98933 -12.72921 -12.65437 -12.57820 -12.26206 -12.16900 -12.12315 -12.04545 -11.83018 -11.69967 -11.37330 -11.36094 -11.34094 -11.02722 -10.94225 -10.48762 -10.43993 -10.30026 -9.97603 -8.60373 -7.81915 -5.25904 0.13591 0.61006 1.04711 1.39733 1.45749 1.49565 1.55625 2.17837 2.26705 2.53438 3.19135 3.31488 3.36720 3.63963 3.75702 3.81454 3.94018 3.97889 4.03230 4.07817 4.08018 4.20781 4.34492 4.38810 4.40740 4.52664 4.57875 4.61072 4.75999 4.78195 4.82635 4.84665 4.96304 5.03330 5.05223 5.07689 5.14291 5.20555 5.31509 5.34392 5.43829 5.44989 5.50481 5.54049 5.65475 5.70076 5.76053 5.81760 5.82357 6.42091 6.43357 6.88836 7.12109 7.20336 7.92880 8.44105 9.22373 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.002880 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.646201 B = 9719.059344 C =11655.569597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.106 4.106 4 C 0.119 3.881 5 N -0.349 5.349 6 C 0.115 3.885 7 C -0.128 4.128 8 C 0.602 3.398 9 O -0.568 6.568 10 N -0.706 5.706 11 C 0.141 3.859 12 C -0.092 4.092 13 C -0.119 4.119 14 C -0.092 4.092 15 C -0.124 4.124 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.253 4.253 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.928 5.928 22 Si 0.953 3.047 23 H -0.288 1.288 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.195 3.805 27 N -0.233 5.233 28 N -0.091 5.091 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.244 0.756 37 H 0.407 0.593 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.008 0.992 49 H 0.245 0.755 50 H 0.060 0.940 51 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -17.208 11.974 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C -0.144 4.144 4 C 0.000 4.000 5 N -0.133 5.133 6 C -0.044 4.044 7 C -0.268 4.268 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.355 5.355 11 C 0.017 3.983 12 C -0.094 4.094 13 C -0.176 4.176 14 C -0.130 4.130 15 C -0.163 4.163 16 C 0.011 3.989 17 N -0.327 5.327 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.240 4.240 21 N -0.574 5.574 22 Si 0.783 3.217 23 H -0.215 1.215 24 H -0.227 1.227 25 H -0.193 1.193 26 C 0.069 3.931 27 N -0.106 5.106 28 N -0.071 5.071 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.260 0.740 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.054 0.946 50 H 0.079 0.921 51 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -4.319 -17.406 11.216 21.153 hybrid contribution -0.455 -0.045 -0.997 1.097 sum -4.775 -17.451 10.219 20.778 Atomic orbital electron populations 1.24104 0.96056 1.02731 0.99248 1.22747 0.95957 0.97343 1.01489 1.20970 0.97867 0.97375 0.98153 1.22511 0.94689 0.79838 1.02921 1.50882 1.34598 1.18215 1.09617 1.23867 0.96452 0.87739 0.96301 1.21583 1.10690 1.01040 0.93531 1.16944 0.77943 0.81384 0.85017 1.90733 1.56279 1.79465 1.18318 1.45991 1.50377 1.20476 1.18676 1.21408 0.98450 0.84422 0.93971 1.21353 0.96057 0.95537 0.96450 1.21639 0.96550 0.98806 1.00609 1.21363 0.99561 0.94423 0.97697 1.21931 0.98443 0.99623 0.96280 1.21115 0.95633 0.88600 0.93562 1.44221 1.61094 1.20239 1.07100 1.19415 1.02048 1.30476 0.86368 0.91752 1.25621 0.94768 1.03186 1.00445 1.70175 1.04660 1.43328 1.39208 0.85472 0.77094 0.78726 0.80453 1.21465 1.22706 1.19314 1.20561 0.89507 0.92856 0.90187 1.74729 1.16491 1.08261 1.11159 1.81911 1.10229 1.05011 1.09930 0.88934 0.86717 0.85056 0.91656 0.90999 0.86254 0.83884 0.74016 0.75648 0.92535 0.89934 0.94971 0.92503 0.91532 0.92749 0.89951 0.91831 0.89980 0.93060 0.97365 0.94568 0.92149 0.99945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 14.32 67.79 0.97 -0.69 16 2 C -0.16 -1.38 9.52 25.65 0.24 -1.13 16 3 C -0.11 -1.32 5.86 29.85 0.17 -1.14 16 4 C 0.12 1.18 6.52 86.38 0.56 1.74 16 5 N -0.35 -7.09 3.69 -347.09 -1.28 -8.37 16 6 C 0.11 2.46 11.27 83.85 0.95 3.40 16 7 C -0.13 -4.04 6.99 40.82 0.29 -3.75 16 8 C 0.60 21.09 7.82 86.69 0.68 21.77 16 9 O -0.57 -20.80 16.86 -4.01 -0.07 -20.87 16 10 N -0.71 -25.74 4.99 -466.28 -2.33 -28.07 16 11 C 0.14 4.79 4.57 86.38 0.39 5.19 16 12 C -0.09 -3.32 0.53 -52.11 -0.03 -3.35 16 13 C -0.12 -4.15 7.81 71.98 0.56 -3.58 16 14 C -0.09 -2.84 4.71 30.62 0.14 -2.70 16 15 C -0.12 -3.93 5.74 30.68 0.18 -3.75 16 16 C 0.14 5.60 6.52 86.36 0.56 6.16 16 17 N -0.60 -29.98 2.43 -699.09 -1.70 -31.68 16 18 C -0.25 -13.89 9.58 84.03 0.81 -13.08 16 19 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 20 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 21 N -0.93 -55.90 11.19 21.65 0.24 -55.66 16 22 Si 0.95 46.40 29.59 68.60 2.03 48.43 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.19 9.30 3.73 86.36 0.32 9.62 16 27 N -0.23 -8.35 12.04 -50.00 -0.60 -8.95 16 28 N -0.09 -2.78 13.65 37.02 0.51 -2.27 16 29 H 0.09 0.93 7.84 -2.91 -0.02 0.91 16 30 H 0.11 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.13 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.06 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.14 0.41 8.08 -2.38 -0.02 0.39 16 36 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.41 16.30 5.91 -92.71 -0.55 15.76 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.03 1.20 6.87 -2.38 -0.02 1.18 16 41 H 0.06 2.16 5.97 -2.39 -0.01 2.15 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 2.03 6.34 -2.39 -0.02 2.02 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 48 H 0.01 0.35 8.14 -2.38 -0.02 0.34 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.06 3.26 4.93 -2.39 -0.01 3.25 16 51 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 Total: -1.00 -74.53 409.62 4.39 -70.13 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.38 Total: 24.72 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.22 Total: 12.59 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -5.16 Total: -135.01 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.53 4.39 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724341071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.119 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds