Wall clock time and date at job start Wed Apr 1 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00524 * 2 1 4 4 C 1.52999 * 109.47361 * 124.99385 * 3 2 1 5 5 N 1.46497 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59397 * 124.95266 * 5 4 3 7 7 C 1.36589 * 106.84144 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.77237 * 180.26268 * 7 6 5 9 9 O 1.21593 * 119.99829 * 359.71826 * 8 7 6 10 10 N 1.34776 * 120.00140 * 179.71684 * 8 7 6 11 11 C 1.46496 * 119.99941 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47362 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.49414 * 59.99925 * 12 11 10 14 14 C 1.53036 * 109.49953 * 180.02562 * 12 11 10 15 15 C 1.53046 * 109.53708 * 181.28721 * 14 12 11 16 16 C 1.53189 * 109.33835 * 298.68007 * 15 14 12 17 17 N 1.46931 * 108.77431 * 54.62093 * 16 15 14 18 18 C 1.36937 * 120.63000 * 126.41450 * 17 16 15 19 19 H 1.07996 * 119.99954 * 331.81747 * 18 17 16 20 20 C 1.38813 * 120.00094 * 151.82084 * 18 17 16 21 21 N 1.31620 * 120.00016 * 343.07585 * 20 18 17 22 22 Si 1.86801 * 119.99989 * 163.07909 * 20 18 17 23 23 H 1.48499 * 109.47173 * 60.00171 * 22 20 18 24 24 H 1.48502 * 109.46899 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46954 * 299.99795 * 22 20 18 26 26 C 1.46923 * 118.74097 * 306.38885 * 17 16 15 27 27 N 1.34399 * 108.46103 * 0.02562 * 7 6 5 28 28 N 1.28770 * 109.52073 * 359.97438 * 27 7 6 29 29 H 1.08001 * 119.99568 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00422 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99568 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46632 * 4.99934 * 3 2 1 33 33 H 1.08993 * 109.47122 * 244.99880 * 3 2 1 34 34 H 1.09008 * 109.46644 * 60.00148 * 4 3 2 35 35 H 1.08997 * 109.47218 * 300.00763 * 4 3 2 36 36 H 1.08003 * 126.57658 * 0.02562 * 6 5 4 37 37 H 0.97000 * 119.99852 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47441 * 299.99957 * 11 10 8 39 39 H 1.09006 * 109.47406 * 60.00089 * 11 10 8 40 40 H 1.08998 * 109.46793 * 59.99982 * 13 12 11 41 41 H 1.08996 * 109.47310 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47073 * 300.00082 * 13 12 11 43 43 H 1.09002 * 109.45783 * 301.33762 * 14 12 11 44 44 H 1.08991 * 109.45987 * 61.29903 * 14 12 11 45 45 H 1.08998 * 109.49116 * 178.71164 * 15 14 12 46 46 H 1.09000 * 109.47087 * 58.63624 * 15 14 12 47 47 H 1.08994 * 109.58930 * 294.83364 * 16 15 14 48 48 H 1.08992 * 109.70238 * 174.47432 * 16 15 14 49 49 H 0.96995 * 120.00173 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.58640 * 293.82615 * 26 17 16 51 51 H 1.08998 * 109.70923 * 173.46477 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7681 2.6014 1.1813 6 6 3.8489 3.4833 2.1978 7 6 4.6287 4.5172 1.7637 8 6 4.9936 5.7112 2.5496 9 8 4.5865 5.8372 3.6884 10 7 5.7783 6.6623 2.0054 11 6 6.1411 7.8476 2.7860 12 6 7.0315 8.7616 1.9416 13 6 6.2742 9.1919 0.6836 14 6 7.4113 9.9998 2.7568 15 6 8.2755 10.9299 1.9021 16 6 9.5618 10.2010 1.5011 17 7 9.2036 8.9368 0.8436 18 6 9.6994 8.6298 -0.3954 19 1 9.9571 9.4200 -1.0849 20 6 9.8707 7.3028 -0.7652 21 7 9.8821 6.3599 0.1531 22 14 10.0850 6.8553 -2.5661 23 1 11.2894 7.5362 -3.1054 24 1 10.2492 5.3849 -2.6945 25 1 8.8875 7.2888 -3.3297 26 6 8.3037 8.0080 1.5409 27 7 5.0117 4.2605 0.5013 28 7 4.5197 3.1321 0.1234 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9313 34 1 3.7400 0.5064 1.0921 35 1 2.4773 1.2355 2.1130 36 1 3.3858 3.3900 3.1691 37 1 6.1034 6.5615 1.0970 38 1 5.2370 8.3846 3.0727 39 1 6.6814 7.5414 3.6819 40 1 5.3701 9.7291 0.9698 41 1 6.9089 9.8425 0.0822 42 1 6.0043 8.3101 0.1026 43 1 6.5064 10.5243 3.0636 44 1 7.9714 9.6949 3.6407 45 1 8.5266 11.8221 2.4757 46 1 7.7249 11.2160 1.0060 47 1 10.1572 9.9944 2.3903 48 1 10.1361 10.8209 0.8127 49 1 10.0022 5.4328 -0.1052 50 1 8.7965 7.6227 2.4335 51 1 8.0454 7.1806 0.8801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724341075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:51 Heat of formation + Delta-G solvation = 92.559315 kcal Electronic energy + Delta-G solvation = -30968.389438 eV Core-core repulsion = 26905.849082 eV Total energy + Delta-G solvation = -4062.540356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.20763 -39.42628 -38.12623 -36.73094 -34.72376 -34.01078 -33.09648 -31.44595 -30.92471 -29.85238 -29.51504 -26.52222 -25.75168 -25.21644 -24.82786 -23.17398 -22.04412 -21.91176 -20.54161 -20.36937 -20.01306 -18.31514 -17.60202 -16.64556 -16.35687 -16.24732 -15.77727 -15.65969 -15.11719 -14.75171 -14.66000 -14.27161 -14.02704 -13.82868 -13.67476 -13.46723 -13.30566 -13.10853 -13.00999 -12.67033 -12.26854 -12.17808 -12.11368 -11.93431 -11.64856 -11.55028 -11.23824 -11.18644 -10.87814 -10.76876 -10.56929 -10.48768 -10.34835 -10.11221 -10.04273 -9.92254 -9.89644 -9.74190 -9.48196 -9.31285 -9.29379 -8.61960 -8.39536 -6.58759 -5.72015 -3.14605 1.08987 1.65663 1.83164 1.97717 3.44113 3.45399 3.51595 3.51656 3.53380 4.05097 4.18969 4.28263 4.46438 4.55831 4.68766 4.75383 4.77538 4.96312 5.08722 5.20557 5.29274 5.37479 5.42526 5.49031 5.51735 5.59478 5.65784 5.79569 5.83717 6.03187 6.07807 6.11364 6.16347 6.18001 6.24067 6.26453 6.31845 6.48253 6.50022 6.60789 6.70131 6.80891 6.89963 6.95078 7.04201 7.11896 7.37307 7.67167 7.77868 7.85554 8.05302 8.47083 8.51178 9.27751 9.91161 10.48453 11.35791 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002779 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.993164 B =10074.052764 C =11880.542146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.366 5.366 6 C 0.089 3.911 7 C -0.096 4.096 8 C 0.601 3.399 9 O -0.553 6.553 10 N -0.699 5.699 11 C 0.136 3.864 12 C -0.103 4.103 13 C -0.127 4.127 14 C -0.094 4.094 15 C -0.135 4.135 16 C 0.144 3.856 17 N -0.587 5.587 18 C -0.253 4.253 19 H 0.063 0.937 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.184 3.816 27 N -0.194 5.194 28 N -0.064 5.064 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.415 0.585 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.015 0.985 48 H 0.051 0.949 49 H 0.254 0.746 50 H 0.017 0.983 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 -8.544 4.458 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.151 5.151 6 C -0.068 4.068 7 C -0.235 4.235 8 C 0.385 3.615 9 O -0.431 6.431 10 N -0.349 5.349 11 C 0.012 3.988 12 C -0.105 4.105 13 C -0.184 4.184 14 C -0.132 4.132 15 C -0.174 4.174 16 C 0.017 3.983 17 N -0.310 5.310 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.728 3.272 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.058 3.942 27 N -0.068 5.068 28 N -0.044 5.044 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.220 0.780 37 H 0.252 0.748 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.270 -8.862 3.788 19.777 hybrid contribution -0.105 -0.511 -0.305 0.604 sum -17.375 -9.373 3.483 20.047 Atomic orbital electron populations 1.23953 0.95883 1.02257 0.99780 1.22755 0.96007 0.97709 1.01093 1.21035 0.98026 0.96674 0.98800 1.21986 0.94419 0.81615 1.01350 1.50561 1.36014 1.17398 1.11125 1.23325 0.98777 0.89414 0.95287 1.21566 1.07945 1.00394 0.93603 1.16733 0.78722 0.80987 0.85061 1.90763 1.56112 1.78607 1.17626 1.45902 1.49447 1.20532 1.19050 1.21440 0.98131 0.84923 0.94271 1.21551 0.98153 0.95681 0.95161 1.21732 0.98375 1.01102 0.97223 1.21339 0.98623 0.95489 0.97784 1.22049 0.98862 0.97240 0.99284 1.20917 0.93098 0.88675 0.95588 1.43950 1.51772 1.17369 1.17862 1.19083 1.38217 0.91182 0.89778 0.91879 1.25009 1.00187 0.96759 0.97358 1.69999 1.53041 1.00119 1.31137 0.86439 0.78068 0.77167 0.85512 1.21111 1.21647 1.20941 1.20805 0.85495 0.91975 0.95922 1.74757 1.14413 1.07312 1.10295 1.82020 1.09008 1.05081 1.08286 0.88401 0.88047 0.86701 0.90557 0.88923 0.88203 0.87661 0.78018 0.74756 0.92045 0.91607 0.94567 0.90951 0.93478 0.93404 0.92577 0.93276 0.91955 0.96673 0.92999 0.93574 0.96494 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 14.32 29.01 0.42 -0.47 16 2 C -0.16 -0.79 9.52 -36.03 -0.34 -1.13 16 3 C -0.11 -0.68 5.86 -27.88 -0.16 -0.84 16 4 C 0.13 0.79 6.52 -4.04 -0.03 0.76 16 5 N -0.37 -3.97 3.69 -61.06 -0.23 -4.20 16 6 C 0.09 1.03 11.27 -16.84 -0.19 0.84 16 7 C -0.10 -1.50 6.99 -83.55 -0.58 -2.08 16 8 C 0.60 10.45 7.82 -12.47 -0.10 10.35 16 9 O -0.55 -10.32 16.86 5.28 0.09 -10.23 16 10 N -0.70 -12.43 4.99 -61.35 -0.31 -12.74 16 11 C 0.14 2.34 4.57 -4.04 -0.02 2.32 16 12 C -0.10 -1.89 0.53 -154.38 -0.08 -1.97 16 13 C -0.13 -2.28 7.81 37.16 0.29 -1.99 16 14 C -0.09 -1.56 4.71 -26.69 -0.13 -1.69 16 15 C -0.14 -2.31 5.74 -26.61 -0.15 -2.46 16 16 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 17 N -0.59 -14.31 2.43 -172.32 -0.42 -14.73 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 21 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 22 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.18 4.25 3.72 -3.71 -0.01 4.23 16 27 N -0.19 -3.34 12.04 32.84 0.40 -2.94 16 28 N -0.06 -0.96 13.65 60.35 0.82 -0.13 16 29 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 30 H 0.10 0.39 8.06 -52.49 -0.42 -0.03 16 31 H 0.12 0.46 8.06 -52.49 -0.42 0.03 16 32 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.11 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.20 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.41 7.85 5.91 -40.82 -0.24 7.61 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.41 5.97 -51.93 -0.31 1.10 16 42 H 0.05 0.87 6.86 -51.93 -0.36 0.51 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.09 2.30 4.97 -51.93 -0.26 2.04 16 LS Contribution 409.65 15.07 6.17 6.17 Total: -1.00 -32.58 409.65 -7.41 -39.99 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.19 Total: 5.25 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.34 Total: 1.95 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.89 Total: -60.05 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.58 -7.41 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724341075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.547 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds