Wall clock time and date at job start Wed Apr 1 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00524 * 2 1 4 4 C 1.52999 * 109.47361 * 124.99385 * 3 2 1 5 5 N 1.46497 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59397 * 124.95266 * 5 4 3 7 7 C 1.36589 * 106.84144 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.77237 * 180.26268 * 7 6 5 9 9 O 1.21593 * 119.99829 * 359.71826 * 8 7 6 10 10 N 1.34776 * 120.00140 * 179.71684 * 8 7 6 11 11 C 1.46496 * 119.99941 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47362 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.49414 * 59.99925 * 12 11 10 14 14 C 1.53036 * 109.49953 * 180.02562 * 12 11 10 15 15 C 1.53046 * 109.53708 * 181.28721 * 14 12 11 16 16 C 1.53189 * 109.33835 * 298.68007 * 15 14 12 17 17 N 1.46931 * 108.77431 * 54.62093 * 16 15 14 18 18 C 1.36937 * 120.63000 * 126.41450 * 17 16 15 19 19 H 1.07996 * 119.99954 * 331.81747 * 18 17 16 20 20 C 1.38813 * 120.00094 * 151.82084 * 18 17 16 21 21 N 1.31620 * 120.00016 * 343.07585 * 20 18 17 22 22 Si 1.86801 * 119.99989 * 163.07909 * 20 18 17 23 23 H 1.48499 * 109.47173 * 60.00171 * 22 20 18 24 24 H 1.48502 * 109.46899 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46954 * 299.99795 * 22 20 18 26 26 C 1.46923 * 118.74097 * 306.38885 * 17 16 15 27 27 N 1.34399 * 108.46103 * 0.02562 * 7 6 5 28 28 N 1.28770 * 109.52073 * 359.97438 * 27 7 6 29 29 H 1.08001 * 119.99568 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00422 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99568 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46632 * 4.99934 * 3 2 1 33 33 H 1.08993 * 109.47122 * 244.99880 * 3 2 1 34 34 H 1.09008 * 109.46644 * 60.00148 * 4 3 2 35 35 H 1.08997 * 109.47218 * 300.00763 * 4 3 2 36 36 H 1.08003 * 126.57658 * 0.02562 * 6 5 4 37 37 H 0.97000 * 119.99852 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47441 * 299.99957 * 11 10 8 39 39 H 1.09006 * 109.47406 * 60.00089 * 11 10 8 40 40 H 1.08998 * 109.46793 * 59.99982 * 13 12 11 41 41 H 1.08996 * 109.47310 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47073 * 300.00082 * 13 12 11 43 43 H 1.09002 * 109.45783 * 301.33762 * 14 12 11 44 44 H 1.08991 * 109.45987 * 61.29903 * 14 12 11 45 45 H 1.08998 * 109.49116 * 178.71164 * 15 14 12 46 46 H 1.09000 * 109.47087 * 58.63624 * 15 14 12 47 47 H 1.08994 * 109.58930 * 294.83364 * 16 15 14 48 48 H 1.08992 * 109.70238 * 174.47432 * 16 15 14 49 49 H 0.96995 * 120.00173 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.58640 * 293.82615 * 26 17 16 51 51 H 1.08998 * 109.70923 * 173.46477 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7681 2.6014 1.1813 6 6 3.8489 3.4833 2.1978 7 6 4.6287 4.5172 1.7637 8 6 4.9936 5.7112 2.5496 9 8 4.5865 5.8372 3.6884 10 7 5.7783 6.6623 2.0054 11 6 6.1411 7.8476 2.7860 12 6 7.0315 8.7616 1.9416 13 6 6.2742 9.1919 0.6836 14 6 7.4113 9.9998 2.7568 15 6 8.2755 10.9299 1.9021 16 6 9.5618 10.2010 1.5011 17 7 9.2036 8.9368 0.8436 18 6 9.6994 8.6298 -0.3954 19 1 9.9571 9.4200 -1.0849 20 6 9.8707 7.3028 -0.7652 21 7 9.8821 6.3599 0.1531 22 14 10.0850 6.8553 -2.5661 23 1 11.2894 7.5362 -3.1054 24 1 10.2492 5.3849 -2.6945 25 1 8.8875 7.2888 -3.3297 26 6 8.3037 8.0080 1.5409 27 7 5.0117 4.2605 0.5013 28 7 4.5197 3.1321 0.1234 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9313 34 1 3.7400 0.5064 1.0921 35 1 2.4773 1.2355 2.1130 36 1 3.3858 3.3900 3.1691 37 1 6.1034 6.5615 1.0970 38 1 5.2370 8.3846 3.0727 39 1 6.6814 7.5414 3.6819 40 1 5.3701 9.7291 0.9698 41 1 6.9089 9.8425 0.0822 42 1 6.0043 8.3101 0.1026 43 1 6.5064 10.5243 3.0636 44 1 7.9714 9.6949 3.6407 45 1 8.5266 11.8221 2.4757 46 1 7.7249 11.2160 1.0060 47 1 10.1572 9.9944 2.3903 48 1 10.1361 10.8209 0.8127 49 1 10.0022 5.4328 -0.1052 50 1 8.7965 7.6227 2.4335 51 1 8.0454 7.1806 0.8801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724341075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:50 Heat of formation + Delta-G solvation = 71.987943 kcal Electronic energy + Delta-G solvation = -30969.281480 eV Core-core repulsion = 26905.849082 eV Total energy + Delta-G solvation = -4063.432397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.24992 -40.85103 -39.62819 -37.33284 -36.30787 -34.95571 -34.65000 -33.00326 -32.04090 -31.56043 -30.29379 -27.98912 -27.38414 -26.94818 -25.57275 -24.45499 -23.73472 -22.80955 -22.06655 -21.28076 -20.76635 -19.72590 -18.91902 -18.46712 -17.33148 -17.21461 -17.08712 -16.74388 -16.25490 -16.16215 -15.76244 -15.68244 -15.38700 -15.17828 -15.03111 -14.87583 -14.70807 -14.31250 -13.98578 -13.76947 -13.72040 -13.66193 -13.12026 -13.08993 -13.00290 -12.70191 -12.65827 -12.55832 -12.27229 -12.18354 -12.13803 -12.03529 -11.83727 -11.69974 -11.37050 -11.36081 -11.34130 -11.02611 -10.94045 -10.47992 -10.43818 -10.29302 -9.97514 -8.59171 -7.81664 -5.26091 0.13750 0.61084 1.04472 1.40469 1.46093 1.50222 1.55308 2.17899 2.26777 2.53771 3.19198 3.31887 3.37055 3.64148 3.76047 3.81999 3.94123 3.98056 4.03536 4.07839 4.08091 4.21247 4.34948 4.39215 4.40727 4.52880 4.57953 4.61380 4.76201 4.78180 4.82870 4.84813 4.96741 5.03401 5.06226 5.07695 5.14287 5.20704 5.31624 5.34422 5.43889 5.44922 5.50559 5.54086 5.65515 5.71318 5.76074 5.81909 5.82611 6.42265 6.43841 6.88868 7.12218 7.20750 7.93141 8.44692 9.22639 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002779 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.993164 B =10074.052764 C =11880.542146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C -0.103 4.103 4 C 0.117 3.883 5 N -0.348 5.348 6 C 0.114 3.886 7 C -0.128 4.128 8 C 0.602 3.398 9 O -0.568 6.568 10 N -0.706 5.706 11 C 0.141 3.859 12 C -0.092 4.092 13 C -0.119 4.119 14 C -0.093 4.093 15 C -0.124 4.124 16 C 0.136 3.864 17 N -0.603 5.603 18 C -0.255 4.255 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.928 5.928 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.279 1.279 26 C 0.196 3.804 27 N -0.233 5.233 28 N -0.091 5.091 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.008 0.992 48 H 0.051 0.949 49 H 0.246 0.754 50 H -0.018 1.018 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.802 -8.337 5.416 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.044 4.044 7 C -0.268 4.268 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.355 5.355 11 C 0.018 3.982 12 C -0.094 4.094 13 C -0.176 4.176 14 C -0.130 4.130 15 C -0.163 4.163 16 C 0.011 3.989 17 N -0.326 5.326 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.240 4.240 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.205 1.205 26 C 0.070 3.930 27 N -0.106 5.106 28 N -0.071 5.071 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.161 0.839 36 H 0.260 0.740 37 H 0.244 0.756 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.000 1.000 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.557 -8.642 4.731 21.899 hybrid contribution 0.577 -0.631 -0.565 1.025 sum -18.980 -9.273 4.167 21.532 Atomic orbital electron populations 1.24102 0.95932 1.02806 0.99073 1.22745 0.96042 0.97366 1.01650 1.20951 0.97762 0.97407 0.97943 1.22515 0.94675 0.79784 1.03151 1.50873 1.34506 1.18097 1.09819 1.23865 0.96593 0.87667 0.96245 1.21580 1.10253 1.01287 0.93705 1.16943 0.78127 0.81237 0.84982 1.90734 1.56829 1.79112 1.18132 1.45984 1.49699 1.21095 1.18729 1.21408 0.98531 0.84798 0.93513 1.21358 0.95788 0.96233 0.96024 1.21639 0.99120 1.00408 0.96447 1.21364 1.00016 0.94536 0.97134 1.21928 0.96576 0.97873 0.99882 1.21109 0.95343 0.87486 0.94964 1.44200 1.52274 1.18570 1.17569 1.19370 1.36983 0.91183 0.90956 0.91809 1.25645 1.00992 0.96871 1.00501 1.70161 1.54898 0.99790 1.32550 0.85534 0.78211 0.76180 0.81715 1.20262 1.22593 1.20499 1.20543 0.87191 0.91760 0.93527 1.74730 1.15825 1.08558 1.11498 1.81914 1.10249 1.04952 1.09963 0.88583 0.86873 0.85459 0.91130 0.90964 0.86772 0.83853 0.74031 0.75636 0.89960 0.92516 0.91544 0.92527 0.94951 0.89952 0.92748 0.89987 0.91846 0.97406 0.93070 0.94525 0.99957 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 14.32 67.78 0.97 -0.44 16 2 C -0.16 -1.29 9.52 25.64 0.24 -1.04 16 3 C -0.10 -1.16 5.86 29.85 0.17 -0.98 16 4 C 0.12 1.17 6.52 86.38 0.56 1.73 16 5 N -0.35 -7.08 3.69 -347.10 -1.28 -8.36 16 6 C 0.11 2.45 11.27 83.85 0.95 3.40 16 7 C -0.13 -4.02 6.99 40.82 0.29 -3.74 16 8 C 0.60 21.05 7.82 86.69 0.68 21.73 16 9 O -0.57 -20.79 16.86 -4.01 -0.07 -20.86 16 10 N -0.71 -25.68 4.99 -466.28 -2.33 -28.01 16 11 C 0.14 4.79 4.57 86.38 0.39 5.19 16 12 C -0.09 -3.32 0.53 -52.10 -0.03 -3.35 16 13 C -0.12 -4.15 7.81 71.98 0.56 -3.59 16 14 C -0.09 -2.85 4.71 30.62 0.14 -2.70 16 15 C -0.12 -3.93 5.74 30.67 0.18 -3.75 16 16 C 0.14 5.61 6.52 86.36 0.56 6.17 16 17 N -0.60 -29.98 2.43 -699.11 -1.70 -31.68 16 18 C -0.25 -14.00 9.58 84.03 0.81 -13.20 16 19 H 0.06 3.44 7.88 -2.91 -0.02 3.41 16 20 C -0.04 -2.51 4.92 84.86 0.42 -2.10 16 21 N -0.93 -55.93 11.19 21.65 0.24 -55.68 16 22 Si 0.95 46.36 29.59 68.60 2.03 48.39 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 C 0.20 9.34 3.72 86.37 0.32 9.66 16 27 N -0.23 -8.30 12.04 -50.00 -0.60 -8.90 16 28 N -0.09 -2.77 13.65 37.02 0.51 -2.27 16 29 H 0.10 0.77 7.84 -2.91 -0.02 0.75 16 30 H 0.11 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.07 0.87 7.79 -2.38 -0.02 0.85 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.14 0.41 8.08 -2.39 -0.02 0.39 16 36 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.41 16.25 5.91 -92.71 -0.55 15.70 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 2.16 5.97 -2.39 -0.01 2.14 16 42 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 2.03 6.34 -2.39 -0.02 2.02 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 49 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 50 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 51 H 0.06 3.22 4.97 -2.39 -0.01 3.21 16 Total: -1.00 -74.32 409.65 4.39 -69.92 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.38 Total: 24.46 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 7.22 Total: 12.99 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -5.16 Total: -134.91 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -74.32 4.39 -69.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724341075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.912 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds