Wall clock time and date at job start Wed Apr 1 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30292 * 126.34739 * 2 1 4 4 N 1.28528 * 110.05420 * 179.76023 * 3 2 1 5 5 C 1.31215 * 109.86197 * 0.39017 * 4 3 2 6 6 N 1.38580 * 126.47543 * 179.88088 * 5 4 3 7 7 C 1.46902 * 110.99765 * 293.38107 * 6 5 4 8 8 C 1.46900 * 110.99899 * 57.33578 * 6 5 4 9 9 H 1.08995 * 109.47052 * 54.99671 * 8 6 5 10 10 C 1.53002 * 109.46914 * 294.99811 * 8 6 5 11 11 C 1.50704 * 109.46867 * 174.99905 * 8 6 5 12 12 H 1.07996 * 120.00031 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99437 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00564 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99837 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46987 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47514 * 119.99607 * 15 13 11 18 18 H 1.48498 * 109.47182 * 240.00161 * 15 13 11 19 19 N 1.36455 * 107.04878 * 359.61926 * 5 4 3 20 20 C 1.46501 * 127.13313 * 180.20186 * 19 5 4 21 21 C 1.53002 * 109.46761 * 89.29226 * 20 19 5 22 22 C 1.53002 * 112.90823 * 311.42697 * 21 20 19 23 23 C 1.53735 * 113.68846 * 179.97438 * 21 20 19 24 24 N 1.47392 * 86.50044 * 245.56976 * 23 21 20 25 25 C 1.46498 * 132.37462 * 179.97438 * 24 23 21 26 26 C 1.52997 * 117.49414 * 188.62484 * 25 24 23 27 27 C 1.52996 * 60.00168 * 252.51028 * 26 25 24 28 28 C 1.35835 * 95.24163 * 0.02562 * 24 23 21 29 29 O 1.21280 * 134.17378 * 180.02562 * 28 24 23 30 30 H 1.08997 * 109.47102 * 270.00319 * 1 2 3 31 31 H 1.09002 * 109.46683 * 30.00402 * 1 2 3 32 32 H 1.09002 * 109.46783 * 150.00147 * 1 2 3 33 33 H 1.08996 * 109.47066 * 63.78476 * 7 6 5 34 34 H 1.09004 * 109.46587 * 183.77598 * 7 6 5 35 35 H 1.08999 * 109.47055 * 303.77353 * 7 6 5 36 36 H 1.09003 * 109.47213 * 60.00531 * 10 8 6 37 37 H 1.09003 * 109.46819 * 179.97438 * 10 8 6 38 38 H 1.08995 * 109.47147 * 299.99802 * 10 8 6 39 39 H 0.96997 * 120.00521 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47117 * 209.28811 * 20 19 5 41 41 H 1.09002 * 109.47516 * 329.28917 * 20 19 5 42 42 H 1.09000 * 109.46399 * 50.33842 * 22 21 20 43 43 H 1.08991 * 109.47200 * 170.33250 * 22 21 20 44 44 H 1.08995 * 109.46860 * 290.34015 * 22 21 20 45 45 H 1.08997 * 113.70780 * 359.97438 * 23 21 20 46 46 H 1.08996 * 113.70520 * 131.16898 * 23 21 20 47 47 H 1.09001 * 115.55333 * 334.32943 * 25 24 23 48 48 H 1.08994 * 117.50602 * 359.97438 * 26 25 24 49 49 H 1.09010 * 117.49772 * 145.02169 * 26 25 24 50 50 H 1.08999 * 117.50259 * 252.51843 * 27 26 25 51 51 H 1.08997 * 117.52137 * 107.47933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0051 5 6 3.5946 -0.6208 0.0002 6 7 4.7580 -1.3736 0.0009 7 6 5.4997 -1.1977 -1.2549 8 6 5.5984 -1.0427 1.1595 9 1 5.0192 -1.1636 2.0748 10 6 6.0760 0.4064 1.0458 11 6 6.7910 -1.9634 1.1943 12 1 6.9126 -2.7185 0.4318 13 6 7.7266 -1.8417 2.1997 14 7 7.5787 -0.9218 3.1279 15 14 9.2053 -2.9824 2.2425 16 1 9.1395 -3.9214 1.0939 17 1 10.4520 -2.1803 2.1558 18 1 9.1995 -3.7528 3.5120 19 7 2.3174 -1.1013 0.0001 20 6 1.9010 -2.5059 -0.0003 21 6 1.7733 -3.0003 1.4420 22 6 2.9903 -2.6514 2.3012 23 6 1.3382 -4.4705 1.5547 24 7 0.0998 -3.9627 2.1719 25 6 -1.0924 -4.6365 2.6921 26 6 -2.2838 -3.7608 3.0850 27 6 -1.4342 -4.4276 4.1687 28 6 0.4483 -2.6524 2.0893 29 8 -0.0891 -1.6132 2.4089 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 5.8214 -0.1602 -1.3445 34 1 6.3729 -1.8501 -1.2555 35 1 4.8552 -1.4524 -2.0962 36 1 5.2134 1.0724 1.0206 37 1 6.6992 0.6521 1.9057 38 1 6.6552 0.5273 0.1304 39 1 8.2372 -0.8359 3.8349 40 1 0.9383 -2.5993 -0.5030 41 1 2.6447 -3.1053 -0.5254 42 1 3.2186 -1.5910 2.1939 43 1 2.7727 -2.8723 3.3460 44 1 3.8463 -3.2422 1.9754 45 1 1.1808 -4.9560 0.5916 46 1 1.9560 -5.0596 2.2324 47 1 -1.3067 -5.6137 2.2592 48 1 -2.1805 -2.6834 2.9570 49 1 -3.2824 -4.1618 2.9106 50 1 -1.8736 -5.2673 4.7072 51 1 -0.7717 -3.7892 4.7532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726349592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:19 Heat of formation + Delta-G solvation = 132.811542 kcal Electronic energy + Delta-G solvation = -33101.544448 eV Core-core repulsion = 29040.749559 eV Total energy + Delta-G solvation = -4060.794888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56862 -41.09599 -37.24690 -37.19303 -36.80503 -34.64217 -32.89748 -31.49719 -30.84826 -28.67679 -27.47808 -26.93137 -25.74452 -25.15176 -24.99458 -24.78455 -22.67089 -21.57391 -21.24347 -20.14790 -19.48808 -18.07011 -17.31376 -16.88667 -16.60218 -16.36600 -15.89773 -15.59805 -15.19100 -14.96949 -14.60577 -14.14676 -13.82614 -13.68093 -13.54784 -13.27383 -13.13627 -12.97750 -12.72008 -12.49416 -12.27695 -12.25594 -12.03356 -11.78446 -11.67149 -11.57965 -11.32500 -11.28379 -11.17027 -11.09035 -10.93317 -10.77295 -10.67711 -10.38169 -10.16574 -10.09868 -9.84210 -9.73357 -9.53086 -8.77783 -8.76668 -8.42545 -8.26975 -7.71033 -6.05774 -4.12298 2.12568 2.36490 2.55605 2.68293 3.25621 3.34325 3.36337 3.43568 3.49020 3.75347 4.15571 4.34564 4.44318 4.48657 4.55338 4.64025 4.66953 4.73883 4.79935 5.01412 5.08002 5.24226 5.25899 5.29761 5.35781 5.38307 5.59140 5.63938 5.70859 5.80918 5.85222 5.95835 5.98662 6.06432 6.10848 6.26818 6.35678 6.37495 6.45947 6.50647 6.59623 6.63809 6.90912 7.10309 7.17152 7.31744 7.58680 7.70992 7.77774 7.96386 8.06070 8.30912 8.50836 8.91402 9.36004 9.52497 11.00458 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003978 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.358023 B = 7036.894163 C = 8573.004255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.175 3.825 3 N -0.300 5.300 4 N -0.309 5.309 5 C 0.373 3.627 6 N -0.468 5.468 7 C 0.045 3.955 8 C 0.222 3.778 9 H 0.045 0.955 10 C -0.182 4.182 11 C -0.507 4.507 12 H 0.065 0.935 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 N -0.472 5.472 20 C 0.145 3.855 21 C -0.130 4.130 22 C -0.124 4.124 23 C 0.122 3.878 24 N -0.613 5.613 25 C 0.085 3.915 26 C -0.183 4.183 27 C -0.193 4.193 28 C 0.533 3.467 29 O -0.488 6.488 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.130 0.870 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.086 -11.211 -4.468 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 N -0.140 5.140 4 N -0.151 5.151 5 C 0.017 3.983 6 N -0.194 5.194 7 C -0.103 4.103 8 C 0.118 3.882 9 H 0.063 0.937 10 C -0.241 4.241 11 C -0.545 4.545 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 N -0.166 5.166 20 C 0.020 3.980 21 C -0.135 4.135 22 C -0.182 4.182 23 C 0.000 4.000 24 N -0.349 5.349 25 C -0.019 4.019 26 C -0.221 4.221 27 C -0.232 4.232 28 C 0.320 3.680 29 O -0.359 6.359 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.148 0.852 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.150 -9.690 -4.028 20.106 hybrid contribution 0.652 -1.377 0.283 1.550 sum -16.498 -11.067 -3.744 20.215 Atomic orbital electron populations 1.20237 0.84504 1.02752 1.04742 1.24611 0.96215 0.82757 1.05684 1.73990 0.97126 1.24270 1.18611 1.74778 1.10865 1.08835 1.20600 1.22893 0.85965 0.88396 1.01025 1.59467 1.02718 1.50558 1.06705 1.22242 0.97981 1.01637 0.88399 1.19481 0.90452 0.93054 0.85206 0.93694 1.22581 1.01195 0.98526 1.01798 1.21037 1.05781 1.16547 1.11175 0.91681 1.24892 0.98001 0.95539 0.95478 1.69925 1.35765 1.32863 1.13877 0.86471 0.82602 0.80615 0.77865 1.19710 1.21111 1.21130 1.46233 1.06705 1.07258 1.56431 1.21394 1.02293 0.79889 0.94415 1.23287 0.97035 0.95651 0.97513 1.21699 0.94573 1.04492 0.97402 1.23105 0.82780 0.95252 0.98831 1.50512 1.16831 1.06794 1.60794 1.21554 0.86695 0.97566 0.96039 1.23353 0.95108 1.00707 1.02885 1.23429 1.03743 1.03703 0.92325 1.22298 0.85855 0.82558 0.77323 1.90679 1.64981 1.29002 1.51244 0.88425 0.89627 0.91872 0.94148 0.89412 0.94053 0.93439 0.89802 0.95310 0.92898 0.89210 0.86602 0.90796 0.92559 0.88692 0.88842 0.88228 0.85222 0.87461 0.87920 0.88033 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 9.67 36.01 0.35 -0.49 16 2 C 0.17 3.06 8.07 -154.02 -1.24 1.82 16 3 N -0.30 -6.36 12.18 32.99 0.40 -5.96 16 4 N -0.31 -6.98 9.42 30.31 0.29 -6.69 16 5 C 0.37 7.49 4.65 -318.88 -1.48 6.00 16 6 N -0.47 -9.48 4.47 -176.08 -0.79 -10.27 16 7 C 0.05 0.85 8.82 60.07 0.53 1.38 16 8 C 0.22 5.34 2.06 -68.86 -0.14 5.19 16 9 H 0.05 1.19 5.76 -51.93 -0.30 0.89 16 10 C -0.18 -4.61 8.20 37.16 0.30 -4.31 16 11 C -0.51 -12.75 7.94 -34.44 -0.27 -13.02 16 12 H 0.07 1.60 6.75 -52.49 -0.35 1.24 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 15 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.47 -7.87 2.33 -114.08 -0.27 -8.13 16 20 C 0.14 1.76 5.47 -4.04 -0.02 1.74 16 21 C -0.13 -1.59 1.22 -154.91 -0.19 -1.78 16 22 C -0.12 -1.97 7.56 37.16 0.28 -1.69 16 23 C 0.12 1.03 8.45 -3.33 -0.03 1.01 16 24 N -0.61 -6.27 3.66 -170.37 -0.62 -6.90 16 25 C 0.08 0.71 7.26 -67.93 -0.49 0.22 16 26 C -0.18 -1.60 10.14 -26.73 -0.27 -1.87 16 27 C -0.19 -1.68 10.46 -26.73 -0.28 -1.96 16 28 C 0.53 7.15 8.23 -10.27 -0.08 7.06 16 29 O -0.49 -7.98 14.11 5.56 0.08 -7.91 16 30 H 0.10 1.42 5.96 -51.93 -0.31 1.11 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.68 7.25 -51.93 -0.38 0.31 16 33 H 0.04 0.82 6.29 -51.93 -0.33 0.49 16 34 H 0.09 1.65 6.52 -51.93 -0.34 1.31 16 35 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.05 1.22 5.48 -51.93 -0.28 0.93 16 37 H 0.08 2.33 6.07 -51.93 -0.32 2.02 16 38 H 0.03 0.70 6.39 -51.93 -0.33 0.37 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 0.86 7.15 -51.93 -0.37 0.49 16 41 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.49 4.49 -51.93 -0.23 1.25 16 43 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.09 0.53 8.01 -51.93 -0.42 0.11 16 46 H 0.10 0.77 8.01 -51.93 -0.42 0.35 16 47 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.11 1.22 6.85 -51.93 -0.36 0.87 16 49 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 50 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -32.26 394.33 -10.17 -42.42 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.66 Total: 5.34 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.14 Total: 0.84 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.36 Total: -61.84 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.91 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.26 -10.17 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726349592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.235 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds