Wall clock time and date at job start Wed Apr 1 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30292 * 126.34739 * 2 1 4 4 N 1.28528 * 110.05420 * 179.76023 * 3 2 1 5 5 C 1.31215 * 109.86197 * 0.39017 * 4 3 2 6 6 N 1.38580 * 126.47543 * 179.88088 * 5 4 3 7 7 C 1.46902 * 110.99765 * 293.38107 * 6 5 4 8 8 C 1.46900 * 110.99899 * 57.33578 * 6 5 4 9 9 H 1.08995 * 109.47052 * 54.99671 * 8 6 5 10 10 C 1.53002 * 109.46914 * 294.99811 * 8 6 5 11 11 C 1.50704 * 109.46867 * 174.99905 * 8 6 5 12 12 H 1.07996 * 120.00031 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99437 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00564 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99837 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46987 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47514 * 119.99607 * 15 13 11 18 18 H 1.48498 * 109.47182 * 240.00161 * 15 13 11 19 19 N 1.36455 * 107.04878 * 359.61926 * 5 4 3 20 20 C 1.46501 * 127.13313 * 180.20186 * 19 5 4 21 21 C 1.53002 * 109.46761 * 89.29226 * 20 19 5 22 22 C 1.53002 * 112.90823 * 311.42697 * 21 20 19 23 23 C 1.53735 * 113.68846 * 179.97438 * 21 20 19 24 24 N 1.47392 * 86.50044 * 245.56976 * 23 21 20 25 25 C 1.46498 * 132.37462 * 179.97438 * 24 23 21 26 26 C 1.52997 * 117.49414 * 188.62484 * 25 24 23 27 27 C 1.52996 * 60.00168 * 252.51028 * 26 25 24 28 28 C 1.35835 * 95.24163 * 0.02562 * 24 23 21 29 29 O 1.21280 * 134.17378 * 180.02562 * 28 24 23 30 30 H 1.08997 * 109.47102 * 270.00319 * 1 2 3 31 31 H 1.09002 * 109.46683 * 30.00402 * 1 2 3 32 32 H 1.09002 * 109.46783 * 150.00147 * 1 2 3 33 33 H 1.08996 * 109.47066 * 63.78476 * 7 6 5 34 34 H 1.09004 * 109.46587 * 183.77598 * 7 6 5 35 35 H 1.08999 * 109.47055 * 303.77353 * 7 6 5 36 36 H 1.09003 * 109.47213 * 60.00531 * 10 8 6 37 37 H 1.09003 * 109.46819 * 179.97438 * 10 8 6 38 38 H 1.08995 * 109.47147 * 299.99802 * 10 8 6 39 39 H 0.96997 * 120.00521 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47117 * 209.28811 * 20 19 5 41 41 H 1.09002 * 109.47516 * 329.28917 * 20 19 5 42 42 H 1.09000 * 109.46399 * 50.33842 * 22 21 20 43 43 H 1.08991 * 109.47200 * 170.33250 * 22 21 20 44 44 H 1.08995 * 109.46860 * 290.34015 * 22 21 20 45 45 H 1.08997 * 113.70780 * 359.97438 * 23 21 20 46 46 H 1.08996 * 113.70520 * 131.16898 * 23 21 20 47 47 H 1.09001 * 115.55333 * 334.32943 * 25 24 23 48 48 H 1.08994 * 117.50602 * 359.97438 * 26 25 24 49 49 H 1.09010 * 117.49772 * 145.02169 * 26 25 24 50 50 H 1.08999 * 117.50259 * 252.51843 * 27 26 25 51 51 H 1.08997 * 117.52137 * 107.47933 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5129 0.6888 0.0051 5 6 3.5946 -0.6208 0.0002 6 7 4.7580 -1.3736 0.0009 7 6 5.4997 -1.1977 -1.2549 8 6 5.5984 -1.0427 1.1595 9 1 5.0192 -1.1636 2.0748 10 6 6.0760 0.4064 1.0458 11 6 6.7910 -1.9634 1.1943 12 1 6.9126 -2.7185 0.4318 13 6 7.7266 -1.8417 2.1997 14 7 7.5787 -0.9218 3.1279 15 14 9.2053 -2.9824 2.2425 16 1 9.1395 -3.9214 1.0939 17 1 10.4520 -2.1803 2.1558 18 1 9.1995 -3.7528 3.5120 19 7 2.3174 -1.1013 0.0001 20 6 1.9010 -2.5059 -0.0003 21 6 1.7733 -3.0003 1.4420 22 6 2.9903 -2.6514 2.3012 23 6 1.3382 -4.4705 1.5547 24 7 0.0998 -3.9627 2.1719 25 6 -1.0924 -4.6365 2.6921 26 6 -2.2838 -3.7608 3.0850 27 6 -1.4342 -4.4276 4.1687 28 6 0.4483 -2.6524 2.0893 29 8 -0.0891 -1.6132 2.4089 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 5.8214 -0.1602 -1.3445 34 1 6.3729 -1.8501 -1.2555 35 1 4.8552 -1.4524 -2.0962 36 1 5.2134 1.0724 1.0206 37 1 6.6992 0.6521 1.9057 38 1 6.6552 0.5273 0.1304 39 1 8.2372 -0.8359 3.8349 40 1 0.9383 -2.5993 -0.5030 41 1 2.6447 -3.1053 -0.5254 42 1 3.2186 -1.5910 2.1939 43 1 2.7727 -2.8723 3.3460 44 1 3.8463 -3.2422 1.9754 45 1 1.1808 -4.9560 0.5916 46 1 1.9560 -5.0596 2.2324 47 1 -1.3067 -5.6137 2.2592 48 1 -2.1805 -2.6834 2.9570 49 1 -3.2824 -4.1618 2.9106 50 1 -1.8736 -5.2673 4.7072 51 1 -0.7717 -3.7892 4.7532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001726349592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:18 Heat of formation + Delta-G solvation = 113.731364 kcal Electronic energy + Delta-G solvation = -33102.371826 eV Core-core repulsion = 29040.749559 eV Total energy + Delta-G solvation = -4061.622267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.99944 -42.04981 -38.96123 -37.98267 -37.84254 -35.84213 -34.81068 -32.79247 -32.09370 -30.54044 -28.78709 -28.28111 -27.09839 -26.64733 -26.60191 -25.64988 -23.34028 -23.24782 -22.35344 -21.35157 -21.07150 -19.06160 -18.46739 -18.17607 -17.84215 -17.56305 -17.31475 -17.12880 -16.42923 -16.20225 -15.97755 -15.50627 -15.19352 -14.85991 -14.80058 -14.51346 -14.26719 -14.11978 -13.89708 -13.77845 -13.53473 -13.43733 -13.35112 -13.17304 -13.00437 -12.89678 -12.76162 -12.68903 -12.52765 -12.48483 -12.35975 -12.16176 -12.03649 -12.00332 -11.88735 -11.43370 -11.41639 -11.07877 -10.75022 -10.59102 -10.44997 -9.82651 -9.55676 -9.43226 -8.06778 -6.19688 0.78344 1.28658 1.38469 1.47403 1.50399 1.61001 1.78770 1.90680 2.46415 2.69042 2.93988 3.07057 3.24065 3.35822 3.51579 3.55640 3.66310 3.82305 3.93192 3.94632 4.02842 4.18935 4.26934 4.38650 4.49673 4.60330 4.62916 4.67118 4.69068 4.71990 4.73055 4.77942 4.82273 4.87684 4.93975 4.96446 4.99437 5.10371 5.11319 5.17037 5.19833 5.26428 5.29301 5.48655 5.52930 5.69411 5.71361 5.74579 5.93639 6.09072 6.28697 6.71871 6.91600 7.12559 7.49306 7.84739 8.99936 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.003978 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.358023 B = 7036.894163 C = 8573.004255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.189 3.811 3 N -0.345 5.345 4 N -0.352 5.352 5 C 0.363 3.637 6 N -0.453 5.453 7 C 0.047 3.953 8 C 0.236 3.764 9 H 0.015 0.985 10 C -0.168 4.168 11 C -0.507 4.507 12 H 0.076 0.924 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.963 3.037 16 H -0.255 1.255 17 H -0.290 1.290 18 H -0.285 1.285 19 N -0.463 5.463 20 C 0.136 3.864 21 C -0.133 4.133 22 C -0.112 4.112 23 C 0.138 3.862 24 N -0.606 5.606 25 C 0.087 3.913 26 C -0.186 4.186 27 C -0.199 4.199 28 C 0.520 3.480 29 O -0.528 6.528 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.019 0.981 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.259 0.741 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.025 0.975 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.140 0.860 46 H 0.111 0.889 47 H 0.171 0.829 48 H 0.075 0.925 49 H 0.129 0.871 50 H 0.127 0.873 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 -15.482 -6.453 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 N -0.185 5.185 4 N -0.195 5.195 5 C 0.006 3.994 6 N -0.178 5.178 7 C -0.100 4.100 8 C 0.130 3.870 9 H 0.033 0.967 10 C -0.227 4.227 11 C -0.545 4.545 12 H 0.094 0.906 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.789 3.211 16 H -0.178 1.178 17 H -0.217 1.217 18 H -0.211 1.211 19 N -0.157 5.157 20 C 0.013 3.987 21 C -0.138 4.138 22 C -0.170 4.170 23 C 0.018 3.982 24 N -0.340 5.340 25 C -0.015 4.015 26 C -0.224 4.224 27 C -0.237 4.237 28 C 0.306 3.694 29 O -0.403 6.403 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.038 0.962 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.157 0.843 46 H 0.129 0.871 47 H 0.188 0.812 48 H 0.093 0.907 49 H 0.148 0.852 50 H 0.145 0.855 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.869 -14.028 -6.038 24.275 hybrid contribution 1.076 -0.023 0.961 1.443 sum -17.793 -14.050 -5.076 23.233 Atomic orbital electron populations 1.20377 0.81388 1.05143 1.04667 1.25367 0.97650 0.82231 1.02752 1.73886 0.97143 1.26280 1.21158 1.74610 1.12141 1.10636 1.22065 1.22793 0.86882 0.88087 1.01628 1.59386 1.02410 1.50002 1.06048 1.22279 0.98658 1.00420 0.88655 1.19104 0.90372 0.91802 0.85727 0.96726 1.22429 1.00197 0.99797 1.00300 1.21308 1.05748 1.16440 1.11034 0.90564 1.25717 1.00841 0.96888 0.95160 1.70091 1.36779 1.34772 1.14689 0.85428 0.78681 0.78760 0.78266 1.17836 1.21693 1.21096 1.46362 1.05156 1.09008 1.55125 1.21897 1.04666 0.77312 0.94799 1.23283 0.94855 0.98926 0.96726 1.21445 0.96360 1.01144 0.98008 1.23310 0.81350 0.92421 1.01156 1.50537 1.17849 1.05811 1.59832 1.21993 0.85406 0.98565 0.95550 1.23338 0.96744 0.99104 1.03172 1.23437 1.03616 1.04094 0.92602 1.22550 0.86219 0.83132 0.77462 1.90658 1.66033 1.30677 1.52945 0.89551 0.88172 0.88514 0.96237 0.89140 0.90955 0.94363 0.92690 0.95285 0.93201 0.85527 0.84797 0.95548 0.93254 0.89383 0.84268 0.87123 0.81209 0.90664 0.85247 0.85489 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 9.67 71.24 0.69 -0.74 16 2 C 0.19 6.57 8.07 137.64 1.11 7.68 16 3 N -0.34 -15.12 12.18 -49.54 -0.60 -15.72 16 4 N -0.35 -16.61 9.42 -58.00 -0.55 -17.15 16 5 C 0.36 14.83 4.65 260.11 1.21 16.04 16 6 N -0.45 -18.44 4.47 -710.99 -3.18 -21.62 16 7 C 0.05 1.75 8.82 127.69 1.13 2.88 16 8 C 0.24 11.72 2.06 44.17 0.09 11.81 16 9 H 0.01 0.84 5.76 -2.39 -0.01 0.82 16 10 C -0.17 -8.99 8.20 71.98 0.59 -8.40 16 11 C -0.51 -25.66 7.94 25.60 0.20 -25.45 16 12 H 0.08 3.63 6.75 -2.91 -0.02 3.62 16 13 C 0.01 0.67 5.30 84.66 0.45 1.11 16 14 N -0.92 -52.99 11.32 21.45 0.24 -52.75 16 15 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 16 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 N -0.46 -15.10 2.33 -514.85 -1.20 -16.30 16 20 C 0.14 2.89 5.47 86.38 0.47 3.36 16 21 C -0.13 -3.01 1.22 -52.41 -0.06 -3.07 16 22 C -0.11 -3.63 7.56 71.98 0.54 -3.09 16 23 C 0.14 1.74 8.45 86.35 0.73 2.47 16 24 N -0.61 -10.49 3.66 -810.71 -2.97 -13.46 16 25 C 0.09 1.14 7.26 44.99 0.33 1.47 16 26 C -0.19 -2.87 10.14 30.59 0.31 -2.56 16 27 C -0.20 -3.08 10.46 30.59 0.32 -2.76 16 28 C 0.52 13.30 8.23 87.64 0.72 14.03 16 29 O -0.53 -17.54 14.11 -3.03 -0.04 -17.59 16 30 H 0.09 2.49 5.96 -2.39 -0.01 2.48 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 1.76 7.25 -2.39 -0.02 1.74 16 33 H 0.02 0.79 6.29 -2.39 -0.02 0.77 16 34 H 0.09 3.28 6.52 -2.39 -0.02 3.26 16 35 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 36 H 0.04 2.09 5.48 -2.39 -0.01 2.08 16 37 H 0.05 3.24 6.07 -2.39 -0.01 3.22 16 38 H 0.03 1.48 6.39 -2.39 -0.02 1.47 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.13 1.81 7.15 -2.39 -0.02 1.79 16 41 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.03 1.10 4.49 -2.39 -0.01 1.09 16 43 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 44 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.14 0.61 8.01 -2.39 -0.02 0.59 16 46 H 0.11 1.24 8.01 -2.39 -0.02 1.22 16 47 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 1.70 6.85 -2.39 -0.02 1.69 16 49 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.35 394.33 3.51 -73.84 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.95 Total: 22.52 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 8.83 Total: 14.78 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -8.25 Total: -137.00 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.04 Total: -17.59 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -77.35 3.51 -73.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726349592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.567 kcal (2) G-P(sol) polarization free energy of solvation -77.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds