Wall clock time and date at job start Wed Apr 1 2020 04:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40452 * 126.82240 * 2 1 4 4 C 1.30708 * 106.79039 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.52534 * 179.97438 * 4 3 2 6 6 C 1.52998 * 117.49776 * 8.77537 * 5 4 3 7 7 C 1.52994 * 117.50411 * 300.11707 * 5 4 3 8 8 N 1.33245 * 108.94863 * 0.23957 * 4 3 2 9 9 C 1.30831 * 109.82908 * 359.59437 * 8 4 3 10 10 C 1.50697 * 125.96185 * 180.12275 * 9 8 4 11 11 C 1.50694 * 109.47215 * 270.32769 * 10 9 8 12 12 O 1.21287 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00124 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99809 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.45753 * 60.00409 * 14 13 11 16 16 C 1.53038 * 109.45958 * 300.02497 * 14 13 11 17 17 C 1.53159 * 109.32944 * 301.36083 * 16 14 13 18 18 N 1.46923 * 108.76913 * 305.35686 * 17 16 14 19 19 C 1.36939 * 120.62850 * 233.63255 * 18 17 16 20 20 H 1.07998 * 119.99743 * 151.81157 * 19 18 17 21 21 C 1.38809 * 120.00313 * 331.80891 * 19 18 17 22 22 N 1.31621 * 119.99822 * 343.08330 * 21 19 18 23 23 Si 1.86805 * 120.00094 * 163.08060 * 21 19 18 24 24 H 1.48499 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46873 * 120.00311 * 23 21 19 26 26 H 1.48501 * 109.46940 * 240.00254 * 23 21 19 27 27 C 1.46927 * 118.74110 * 53.60949 * 18 17 16 28 28 C 1.53043 * 109.45579 * 179.97438 * 14 13 11 29 29 H 1.09004 * 109.46961 * 89.98005 * 1 2 3 30 30 H 1.08996 * 109.47052 * 209.97782 * 1 2 3 31 31 H 1.08995 * 109.47334 * 329.98139 * 1 2 3 32 32 H 1.09001 * 115.55036 * 154.43956 * 5 4 3 33 33 H 1.08997 * 117.49986 * 359.97438 * 6 5 4 34 34 H 1.09009 * 117.50117 * 145.01636 * 6 5 4 35 35 H 1.08998 * 117.50074 * 214.97828 * 7 5 4 36 36 H 1.09007 * 117.49524 * 359.97170 * 7 5 4 37 37 H 1.09005 * 109.47265 * 30.33031 * 10 9 8 38 38 H 1.09002 * 109.46952 * 150.32667 * 10 9 8 39 39 H 0.96996 * 119.99509 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47821 * 59.99805 * 15 14 13 41 41 H 1.09005 * 109.46794 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47125 * 299.99080 * 15 14 13 43 43 H 1.09000 * 109.49324 * 61.30156 * 16 14 13 44 44 H 1.09001 * 109.49292 * 181.39244 * 16 14 13 45 45 H 1.09002 * 109.58865 * 185.57485 * 17 16 14 46 46 H 1.09000 * 109.70795 * 65.21541 * 17 16 14 47 47 H 0.97001 * 120.00000 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58956 * 186.60720 * 27 18 17 49 49 H 1.09003 * 109.69840 * 66.24678 * 27 18 17 50 50 H 1.09000 * 109.49824 * 178.60823 * 28 14 13 51 51 H 1.09003 * 109.49779 * 298.67246 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 6 4.7776 1.5289 -0.0013 6 6 4.6017 3.0346 0.2056 7 6 4.9745 2.4899 -1.1754 8 7 3.5096 -0.6556 -0.0062 9 6 2.2707 -1.0761 -0.0006 10 6 1.8247 -2.5156 -0.0015 11 6 1.6762 -2.9945 -1.4226 12 8 1.9092 -2.2410 -2.3440 13 7 1.2836 -4.2600 -1.6697 14 6 1.1387 -4.7254 -3.0512 15 6 2.4830 -4.6079 -3.7722 16 6 0.0967 -3.8668 -3.7718 17 6 -1.2387 -3.9594 -3.0277 18 7 -1.6098 -5.3750 -2.8967 19 6 -2.8332 -5.8179 -3.3238 20 1 -2.9524 -6.8390 -3.6545 21 6 -3.9201 -4.9545 -3.3314 22 7 -3.8783 -3.8378 -2.6360 23 14 -5.4419 -5.3774 -4.3288 24 1 -5.2381 -6.6783 -5.0152 25 1 -6.6155 -5.4740 -3.4240 26 1 -5.6821 -4.3162 -5.3394 27 6 -0.6432 -6.3064 -2.2994 28 6 0.6859 -6.1873 -3.0518 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6673 1.0632 0.4226 33 1 3.5870 3.4088 0.3418 34 1 5.3759 3.5596 0.7653 35 1 5.9938 2.6567 -1.5238 36 1 4.2053 2.5053 -1.9476 37 1 2.5672 -3.1264 0.5121 38 1 0.8669 -2.5995 0.5122 39 1 1.0962 -4.8622 -0.9328 40 1 3.2254 -5.2189 -3.2588 41 1 2.3755 -4.9545 -4.8001 42 1 2.8059 -3.5668 -3.7715 43 1 0.4308 -2.8295 -3.7915 44 1 -0.0295 -4.2283 -4.7924 45 1 -2.0080 -3.4306 -3.5904 46 1 -1.1394 -3.5145 -2.0376 47 1 -4.6376 -3.2342 -2.6416 48 1 -1.0195 -7.3261 -2.3816 49 1 -0.4923 -6.0560 -1.2493 50 1 0.5540 -6.5269 -4.0792 51 1 1.4396 -6.8018 -2.5594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733362122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:20 Heat of formation + Delta-G solvation = 102.140721 kcal Electronic energy + Delta-G solvation = -31852.754360 eV Core-core repulsion = 27790.629485 eV Total energy + Delta-G solvation = -4062.124875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.16473 -40.10105 -37.59481 -37.21241 -34.47084 -33.86790 -32.83296 -31.87467 -30.85973 -29.95614 -28.68657 -27.47015 -27.21395 -24.14665 -23.78915 -22.57078 -22.37191 -21.98950 -20.79514 -20.17892 -19.74092 -18.71759 -17.35534 -17.06214 -16.81213 -15.74182 -15.52779 -15.20656 -15.10607 -14.87858 -14.65576 -13.99157 -13.79911 -13.66507 -13.49732 -13.42832 -13.26152 -13.16221 -13.11672 -12.54844 -12.25417 -12.22652 -11.80518 -11.74880 -11.64463 -11.59827 -11.44101 -11.13990 -11.00332 -10.97227 -10.77918 -10.68087 -10.41942 -10.29832 -10.02223 -9.93152 -9.86559 -9.64321 -9.60720 -9.26703 -9.07297 -8.65543 -8.51560 -6.72087 -5.84729 -3.27141 1.57018 2.29627 2.71518 2.82334 3.32927 3.40351 3.41647 3.42993 3.75904 3.88649 4.32617 4.44659 4.45698 4.71428 4.82681 4.84884 4.87437 5.03999 5.11647 5.25786 5.26671 5.30455 5.38569 5.46630 5.48233 5.49352 5.53214 5.56499 5.66115 5.92055 5.96020 5.97944 5.98961 6.10335 6.15861 6.31632 6.32180 6.41338 6.45979 6.50245 6.62054 6.68761 6.74903 6.79425 6.86242 7.02653 7.34311 7.62295 7.74688 7.80355 8.15768 8.39588 8.46304 9.16081 9.79328 10.35549 11.23327 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002791 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.969228 B =10029.347638 C =11054.689766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.367 5.367 3 N -0.317 5.317 4 C 0.251 3.749 5 C -0.068 4.068 6 C -0.162 4.162 7 C -0.160 4.160 8 N -0.530 5.530 9 C 0.307 3.693 10 C -0.070 4.070 11 C 0.523 3.477 12 O -0.526 6.526 13 N -0.707 5.707 14 C 0.186 3.814 15 C -0.161 4.161 16 C -0.151 4.151 17 C 0.180 3.820 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.146 3.854 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.398 0.602 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.014 0.986 47 H 0.252 0.748 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.074 0.926 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.539 5.393 7.396 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.157 5.157 3 N -0.145 5.145 4 C -0.031 4.031 5 C -0.088 4.088 6 C -0.200 4.200 7 C -0.198 4.198 8 N -0.258 5.258 9 C 0.030 3.970 10 C -0.112 4.112 11 C 0.306 3.694 12 O -0.403 6.403 13 N -0.358 5.358 14 C 0.101 3.899 15 C -0.219 4.219 16 C -0.191 4.191 17 C 0.054 3.946 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.019 3.981 28 C -0.177 4.177 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.233 0.767 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.032 0.968 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.032 0.968 50 H 0.093 0.907 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.516 6.577 6.737 17.302 hybrid contribution -1.306 -0.737 -0.149 1.507 sum 13.211 5.840 6.588 15.875 Atomic orbital electron populations 1.22034 0.73286 1.04737 1.04786 1.50071 1.07957 1.03621 1.54029 1.77895 1.01258 1.07714 1.27668 1.22987 0.92382 0.89268 0.98454 1.20006 0.93423 0.89714 1.05703 1.23034 1.03690 0.93798 0.99472 1.23035 1.03183 1.01758 0.91838 1.70189 1.19468 1.10779 1.25345 1.23240 0.86021 0.91403 0.96348 1.20227 1.04841 0.88293 0.97877 1.19857 0.77317 0.82431 0.89746 1.90695 1.49474 1.54629 1.45485 1.46012 1.68296 1.12195 1.09336 1.20270 0.94770 0.94542 0.80287 1.22224 0.96460 1.03284 0.99902 1.22577 0.97403 0.99623 0.99517 1.20650 0.91949 0.85389 0.96594 1.44068 1.13450 1.04068 1.69787 1.19208 0.85373 0.97478 1.36088 0.91723 1.25024 0.97333 0.98109 0.99094 1.70031 1.30753 1.12942 1.40871 0.86257 0.83005 0.77843 0.79862 1.20263 1.21758 1.21580 1.20864 0.88833 0.94750 0.93643 1.22342 0.99016 0.93687 1.02678 0.89471 0.88794 0.88952 0.85320 0.87897 0.88008 0.87857 0.88497 0.85419 0.86565 0.76687 0.93384 0.92292 0.90823 0.91223 0.92211 0.89892 0.96769 0.93781 0.92613 0.96806 0.90691 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.33 59.85 0.68 1.75 16 2 N -0.37 -5.40 4.04 -65.10 -0.26 -5.67 16 3 N -0.32 -4.99 12.24 32.42 0.40 -4.60 16 4 C 0.25 3.84 7.69 -156.85 -1.21 2.64 16 5 C -0.07 -0.79 6.33 -91.78 -0.58 -1.37 16 6 C -0.16 -1.52 10.14 -26.70 -0.27 -1.79 16 7 C -0.16 -1.60 10.24 -26.70 -0.27 -1.87 16 8 N -0.53 -8.60 11.19 -8.16 -0.09 -8.69 16 9 C 0.31 4.54 6.48 -155.70 -1.01 3.54 16 10 C -0.07 -0.82 6.02 -29.04 -0.17 -0.99 16 11 C 0.52 7.82 7.24 -10.99 -0.08 7.74 16 12 O -0.53 -9.90 12.25 5.55 0.07 -9.83 16 13 N -0.71 -9.99 4.10 -47.57 -0.20 -10.18 16 14 C 0.19 2.98 0.66 -131.78 -0.09 2.89 16 15 C -0.16 -2.41 8.40 37.15 0.31 -2.09 16 16 C -0.15 -2.95 4.66 -26.63 -0.12 -3.07 16 17 C 0.18 4.10 5.04 -3.73 -0.02 4.08 16 18 N -0.59 -13.77 2.99 -172.34 -0.52 -14.29 16 19 C -0.25 -6.60 9.58 -15.06 -0.14 -6.74 16 20 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.10 11.20 55.49 0.62 -24.48 16 23 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.15 2.70 6.24 -3.71 -0.02 2.68 16 28 C -0.14 -2.13 4.96 -26.61 -0.13 -2.26 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.09 0.88 7.11 -51.93 -0.37 0.51 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 34 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.12 1.06 7.13 -51.93 -0.37 0.69 16 39 H 0.40 4.75 7.27 -40.82 -0.30 4.45 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.26 6.17 -51.93 -0.32 0.94 16 43 H 0.07 1.44 6.20 -51.93 -0.32 1.11 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 2.20 6.06 -51.93 -0.31 1.89 16 46 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 49 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -33.91 403.17 -10.35 -44.25 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.20 Total: 6.13 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.22 Total: 5.13 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.05 Total: -67.91 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.91 -10.35 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733362122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.396 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds