Wall clock time and date at job start Wed Apr 1 2020 04:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40452 * 126.82240 * 2 1 4 4 C 1.30708 * 106.79039 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.52534 * 179.97438 * 4 3 2 6 6 C 1.52998 * 117.49776 * 8.77537 * 5 4 3 7 7 C 1.52994 * 117.50411 * 300.11707 * 5 4 3 8 8 N 1.33245 * 108.94863 * 0.23957 * 4 3 2 9 9 C 1.30831 * 109.82908 * 359.59437 * 8 4 3 10 10 C 1.50697 * 125.96185 * 180.12275 * 9 8 4 11 11 C 1.50694 * 109.47215 * 270.32769 * 10 9 8 12 12 O 1.21287 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00124 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99809 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.45753 * 60.00409 * 14 13 11 16 16 C 1.53038 * 109.45958 * 300.02497 * 14 13 11 17 17 C 1.53159 * 109.32944 * 301.36083 * 16 14 13 18 18 N 1.46923 * 108.76913 * 305.35686 * 17 16 14 19 19 C 1.36939 * 120.62850 * 233.63255 * 18 17 16 20 20 H 1.07998 * 119.99743 * 151.81157 * 19 18 17 21 21 C 1.38809 * 120.00313 * 331.80891 * 19 18 17 22 22 N 1.31621 * 119.99822 * 343.08330 * 21 19 18 23 23 Si 1.86805 * 120.00094 * 163.08060 * 21 19 18 24 24 H 1.48499 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46873 * 120.00311 * 23 21 19 26 26 H 1.48501 * 109.46940 * 240.00254 * 23 21 19 27 27 C 1.46927 * 118.74110 * 53.60949 * 18 17 16 28 28 C 1.53043 * 109.45579 * 179.97438 * 14 13 11 29 29 H 1.09004 * 109.46961 * 89.98005 * 1 2 3 30 30 H 1.08996 * 109.47052 * 209.97782 * 1 2 3 31 31 H 1.08995 * 109.47334 * 329.98139 * 1 2 3 32 32 H 1.09001 * 115.55036 * 154.43956 * 5 4 3 33 33 H 1.08997 * 117.49986 * 359.97438 * 6 5 4 34 34 H 1.09009 * 117.50117 * 145.01636 * 6 5 4 35 35 H 1.08998 * 117.50074 * 214.97828 * 7 5 4 36 36 H 1.09007 * 117.49524 * 359.97170 * 7 5 4 37 37 H 1.09005 * 109.47265 * 30.33031 * 10 9 8 38 38 H 1.09002 * 109.46952 * 150.32667 * 10 9 8 39 39 H 0.96996 * 119.99509 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47821 * 59.99805 * 15 14 13 41 41 H 1.09005 * 109.46794 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47125 * 299.99080 * 15 14 13 43 43 H 1.09000 * 109.49324 * 61.30156 * 16 14 13 44 44 H 1.09001 * 109.49292 * 181.39244 * 16 14 13 45 45 H 1.09002 * 109.58865 * 185.57485 * 17 16 14 46 46 H 1.09000 * 109.70795 * 65.21541 * 17 16 14 47 47 H 0.97001 * 120.00000 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58956 * 186.60720 * 27 18 17 49 49 H 1.09003 * 109.69840 * 66.24678 * 27 18 17 50 50 H 1.09000 * 109.49824 * 178.60823 * 28 14 13 51 51 H 1.09003 * 109.49779 * 298.67246 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 6 4.7776 1.5289 -0.0013 6 6 4.6017 3.0346 0.2056 7 6 4.9745 2.4899 -1.1754 8 7 3.5096 -0.6556 -0.0062 9 6 2.2707 -1.0761 -0.0006 10 6 1.8247 -2.5156 -0.0015 11 6 1.6762 -2.9945 -1.4226 12 8 1.9092 -2.2410 -2.3440 13 7 1.2836 -4.2600 -1.6697 14 6 1.1387 -4.7254 -3.0512 15 6 2.4830 -4.6079 -3.7722 16 6 0.0967 -3.8668 -3.7718 17 6 -1.2387 -3.9594 -3.0277 18 7 -1.6098 -5.3750 -2.8967 19 6 -2.8332 -5.8179 -3.3238 20 1 -2.9524 -6.8390 -3.6545 21 6 -3.9201 -4.9545 -3.3314 22 7 -3.8783 -3.8378 -2.6360 23 14 -5.4419 -5.3774 -4.3288 24 1 -5.2381 -6.6783 -5.0152 25 1 -6.6155 -5.4740 -3.4240 26 1 -5.6821 -4.3162 -5.3394 27 6 -0.6432 -6.3064 -2.2994 28 6 0.6859 -6.1873 -3.0518 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6673 1.0632 0.4226 33 1 3.5870 3.4088 0.3418 34 1 5.3759 3.5596 0.7653 35 1 5.9938 2.6567 -1.5238 36 1 4.2053 2.5053 -1.9476 37 1 2.5672 -3.1264 0.5121 38 1 0.8669 -2.5995 0.5122 39 1 1.0962 -4.8622 -0.9328 40 1 3.2254 -5.2189 -3.2588 41 1 2.3755 -4.9545 -4.8001 42 1 2.8059 -3.5668 -3.7715 43 1 0.4308 -2.8295 -3.7915 44 1 -0.0295 -4.2283 -4.7924 45 1 -2.0080 -3.4306 -3.5904 46 1 -1.1394 -3.5145 -2.0376 47 1 -4.6376 -3.2342 -2.6416 48 1 -1.0195 -7.3261 -2.3816 49 1 -0.4923 -6.0560 -1.2493 50 1 0.5540 -6.5269 -4.0792 51 1 1.4396 -6.8018 -2.5594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733362122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:18 Heat of formation + Delta-G solvation = 81.326895 kcal Electronic energy + Delta-G solvation = -31853.656915 eV Core-core repulsion = 27790.629485 eV Total energy + Delta-G solvation = -4063.027430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.25070 -41.39430 -38.94752 -38.14293 -36.11279 -34.90584 -34.01877 -33.43212 -32.30852 -31.57602 -29.77441 -29.05353 -28.19989 -25.91232 -24.75399 -23.93276 -23.41994 -23.20545 -22.28104 -21.27775 -20.78552 -20.16216 -18.79235 -18.35863 -18.03242 -16.86107 -16.80945 -16.52431 -16.38595 -16.24100 -15.71739 -15.56297 -15.21738 -14.96576 -14.88618 -14.71095 -14.60959 -14.31138 -14.18386 -13.97487 -13.41695 -13.20983 -13.15908 -13.12305 -12.92754 -12.81816 -12.71328 -12.56881 -12.49882 -12.41630 -12.19053 -11.94893 -11.87789 -11.73141 -11.47983 -11.35683 -11.28227 -11.05948 -10.83664 -10.51617 -10.51529 -10.18233 -9.95414 -8.62574 -7.85529 -5.29062 0.47027 1.29367 1.44338 1.48208 1.56502 1.63316 1.68066 2.30571 2.51705 2.80145 3.00608 3.29973 3.35996 3.51051 3.69482 3.78269 3.88722 3.99010 4.00102 4.05749 4.10224 4.15912 4.20193 4.23441 4.40086 4.51891 4.55567 4.62600 4.70575 4.72835 4.73637 4.83375 4.89426 4.90105 4.96999 5.07472 5.11188 5.17958 5.22784 5.23751 5.26992 5.36784 5.39552 5.39898 5.53408 5.65592 5.69735 5.75649 5.79720 6.41524 6.66717 7.04705 7.17927 7.33253 7.90586 8.40830 9.19863 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.002791 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.969228 B =10029.347638 C =11054.689766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.376 5.376 3 N -0.342 5.342 4 C 0.239 3.761 5 C -0.089 4.089 6 C -0.144 4.144 7 C -0.157 4.157 8 N -0.555 5.555 9 C 0.299 3.701 10 C -0.063 4.063 11 C 0.521 3.479 12 O -0.569 6.569 13 N -0.699 5.699 14 C 0.191 3.809 15 C -0.151 4.151 16 C -0.139 4.139 17 C 0.196 3.804 18 N -0.607 5.607 19 C -0.256 4.256 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.929 5.929 23 Si 0.957 3.043 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.297 1.297 27 C 0.140 3.860 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.004 0.996 47 H 0.247 0.753 48 H 0.058 0.942 49 H 0.032 0.968 50 H 0.068 0.932 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.220 3.834 8.565 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.165 5.165 3 N -0.171 5.171 4 C -0.043 4.043 5 C -0.110 4.110 6 C -0.182 4.182 7 C -0.195 4.195 8 N -0.283 5.283 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.307 3.693 12 O -0.448 6.448 13 N -0.351 5.351 14 C 0.105 3.895 15 C -0.209 4.209 16 C -0.179 4.179 17 C 0.070 3.930 18 N -0.331 5.331 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.224 1.224 27 C 0.015 3.985 28 C -0.163 4.163 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.250 0.750 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.050 0.950 50 H 0.087 0.913 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.204 4.971 7.928 18.712 hybrid contribution -1.824 -0.259 -0.533 1.918 sum 14.379 4.712 7.396 16.842 Atomic orbital electron populations 1.22213 0.72022 1.06726 1.04191 1.50276 1.08787 1.03526 1.53920 1.77827 1.01797 1.08781 1.28737 1.23700 0.93336 0.89578 0.97651 1.20278 0.92709 0.90548 1.07421 1.23092 1.03849 0.92213 0.99037 1.23080 1.03937 1.01098 0.91394 1.70191 1.20414 1.11355 1.26365 1.23785 0.85927 0.92525 0.95591 1.20362 1.07288 0.86829 0.95970 1.20364 0.76220 0.82104 0.90660 1.90694 1.51270 1.55719 1.47159 1.45888 1.67817 1.12361 1.09029 1.20118 0.94136 0.94167 0.81046 1.22105 0.96039 1.02277 1.00472 1.22369 0.96902 0.99599 0.99021 1.20297 0.92085 0.85103 0.95531 1.44268 1.13588 1.04695 1.70531 1.19506 0.86441 0.97422 1.35258 0.91578 1.25685 0.99957 0.98429 1.00435 1.70158 1.31169 1.13839 1.42396 0.85360 0.80066 0.77622 0.78331 1.19130 1.21914 1.22448 1.21088 0.89049 0.93672 0.94680 1.22217 0.98180 0.93543 1.02399 0.91265 0.86460 0.87426 0.83832 0.89406 0.84896 0.85185 0.90835 0.82241 0.83740 0.74986 0.90959 0.91740 0.93182 0.92884 0.93319 0.94417 0.97825 0.94433 0.92396 0.95025 0.91296 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.07 11.33 127.77 1.45 3.52 16 2 N -0.38 -11.11 4.04 -359.89 -1.45 -12.57 16 3 N -0.34 -11.03 12.24 -51.33 -0.63 -11.66 16 4 C 0.24 7.38 7.69 138.63 1.07 8.44 16 5 C -0.09 -2.01 6.33 -11.54 -0.07 -2.08 16 6 C -0.14 -2.53 10.14 30.62 0.31 -2.22 16 7 C -0.16 -3.03 10.24 30.61 0.31 -2.72 16 8 N -0.56 -17.86 11.19 -179.73 -2.01 -19.88 16 9 C 0.30 8.66 6.48 138.22 0.90 9.56 16 10 C -0.06 -1.33 6.02 29.10 0.18 -1.16 16 11 C 0.52 14.92 7.24 87.65 0.63 15.56 16 12 O -0.57 -21.56 12.25 -3.05 -0.04 -21.60 16 13 N -0.70 -18.10 4.10 -422.80 -1.74 -19.83 16 14 C 0.19 5.74 0.66 3.63 0.00 5.74 16 15 C -0.15 -4.20 8.40 71.98 0.60 -3.60 16 16 C -0.14 -5.47 4.66 30.66 0.14 -5.33 16 17 C 0.20 9.10 5.04 86.35 0.44 9.53 16 18 N -0.61 -28.02 2.99 -699.16 -2.09 -30.12 16 19 C -0.26 -13.37 9.58 84.03 0.81 -12.57 16 20 H 0.07 3.38 7.88 -2.91 -0.02 3.35 16 21 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 22 N -0.93 -53.05 11.20 21.65 0.24 -52.81 16 23 Si 0.96 44.07 29.59 68.60 2.03 46.10 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 27 C 0.14 4.85 6.24 86.36 0.54 5.39 16 28 C -0.12 -3.42 4.96 30.67 0.15 -3.27 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.12 2.08 7.11 -2.39 -0.02 2.07 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 34 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.16 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.14 2.23 7.13 -2.39 -0.02 2.21 16 39 H 0.41 8.33 7.27 -92.71 -0.67 7.65 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.05 1.67 6.17 -2.39 -0.01 1.65 16 43 H 0.05 2.27 6.20 -2.39 -0.01 2.25 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 2.08 6.06 -2.39 -0.01 2.07 16 46 H 0.00 0.18 7.74 -2.39 -0.02 0.16 16 47 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 48 H 0.06 1.98 7.93 -2.39 -0.02 1.96 16 49 H 0.03 1.00 6.94 -2.39 -0.02 0.99 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -76.83 403.17 2.45 -74.37 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.27 Total: 25.45 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.87 Total: 22.52 kcal Atomic # 7 Polarization: -139.18 SS G_CDS: -7.68 Total: -146.85 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.04 Total: -21.60 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.83 2.45 -74.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733362122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.700 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds