Wall clock time and date at job start Wed Apr 1 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.64183 * 2 1 4 4 N 1.46498 * 109.46960 * 300.69848 * 3 2 1 5 5 C 1.36942 * 120.00078 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99689 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.99864 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00502 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46977 * 119.99953 * 9 7 5 12 12 H 1.48495 * 109.46580 * 239.99699 * 9 7 5 13 13 C 1.55150 * 110.72031 * 236.65962 * 2 1 3 14 14 C 1.54909 * 101.58324 * 277.14028 * 13 2 1 15 15 N 1.47418 * 104.83141 * 322.99191 * 14 13 2 16 16 C 1.34780 * 125.64875 * 204.16232 * 15 14 13 17 17 O 1.21276 * 120.00253 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00016 * 359.96151 * 16 15 14 19 19 H 1.09004 * 107.88224 * 56.54407 * 18 16 15 20 20 C 1.50955 * 108.02638 * 300.00035 * 18 16 15 21 21 C 1.53676 * 110.95741 * 165.71420 * 20 18 16 22 22 C 1.51886 * 106.89755 * 79.08591 * 21 20 18 23 23 N 1.29896 * 127.80968 * 114.85750 * 22 21 20 24 24 N 1.29025 * 109.22747 * 180.25241 * 23 22 21 25 25 C 1.30975 * 109.70768 * 359.92701 * 24 23 22 26 26 N 1.34598 * 124.57936 * 294.89049 * 22 21 20 27 27 C 1.47510 * 125.02311 * 359.51946 * 26 22 21 28 28 C 1.50861 * 108.03065 * 173.06416 * 18 16 15 29 29 C 1.47026 * 108.70544 * 24.12511 * 15 14 13 30 30 H 1.09001 * 109.46801 * 296.86147 * 1 2 3 31 31 H 1.09001 * 109.46998 * 56.85743 * 1 2 3 32 32 H 1.09000 * 109.47050 * 176.86035 * 1 2 3 33 33 H 1.08998 * 109.47130 * 60.69807 * 3 2 1 34 34 H 1.08996 * 109.47171 * 180.69896 * 3 2 1 35 35 H 0.96996 * 120.00093 * 0.02562 * 4 3 2 36 36 H 0.97002 * 120.00632 * 180.02562 * 8 7 5 37 37 H 1.09000 * 111.00546 * 35.21633 * 13 2 1 38 38 H 1.09000 * 111.00185 * 159.06456 * 13 2 1 39 39 H 1.09004 * 110.36773 * 204.15351 * 14 13 2 40 40 H 1.08998 * 110.45952 * 81.88054 * 14 13 2 41 41 H 1.09001 * 109.17807 * 286.09285 * 20 18 16 42 42 H 1.09000 * 109.18255 * 45.33320 * 20 18 16 43 43 H 1.08999 * 109.96481 * 198.42598 * 21 20 18 44 44 H 1.08994 * 109.97041 * 319.64366 * 21 20 18 45 45 H 1.08003 * 126.61326 * 179.86840 * 25 24 23 46 46 H 1.09003 * 109.93112 * 185.33799 * 27 26 22 47 47 H 1.08993 * 109.93142 * 306.54726 * 27 26 22 48 48 H 1.08996 * 109.14537 * 314.87016 * 28 18 16 49 49 H 1.09006 * 109.14419 * 74.02154 * 28 18 16 50 50 H 1.08999 * 109.88555 * 239.52038 * 29 15 14 51 51 H 1.09001 * 110.00749 * 118.42834 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.5817 2.1373 -1.1877 5 6 1.9372 3.4421 -1.4031 6 1 2.5767 3.9511 -0.6973 7 6 1.4746 4.1107 -2.5282 8 7 0.6947 3.4906 -3.3882 9 14 1.9601 5.8904 -2.8225 10 1 2.8370 6.3535 -1.7172 11 1 2.6892 5.9979 -4.1117 12 1 0.7395 6.7346 -2.8722 13 6 2.0790 -0.7976 -1.2123 14 6 2.0126 -2.2521 -0.6835 15 7 2.3715 -2.1518 0.7428 16 6 2.8861 -3.1448 1.4950 17 8 3.1452 -2.9486 2.6634 18 6 3.1394 -4.4990 0.8842 19 1 3.7986 -4.3616 0.0270 20 6 1.8226 -5.0373 0.3792 21 6 2.0418 -6.2336 -0.5602 22 6 2.3120 -7.4419 0.3194 23 7 1.5827 -8.5084 0.4534 24 7 2.1465 -9.3056 1.2967 25 6 3.2615 -8.7728 1.7306 26 7 3.3882 -7.5819 1.1155 27 6 4.4749 -6.5937 1.2516 28 6 3.8675 -5.3415 1.9020 29 6 2.0760 -0.7890 1.2087 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.7269 1.9491 0.8962 34 1 3.1591 1.4096 -0.0125 35 1 1.0070 1.6802 -1.8214 36 1 0.3718 3.9577 -4.1746 37 1 1.4397 -0.6699 -2.0858 38 1 3.1061 -0.5098 -1.4365 39 1 2.7294 -2.8809 -1.2118 40 1 1.0047 -2.6520 -0.7939 41 1 1.2164 -5.3547 1.2277 42 1 1.2970 -4.2496 -0.1606 43 1 1.1486 -6.4032 -1.1615 44 1 2.8969 -6.0453 -1.2094 45 1 3.9470 -9.2051 2.4446 46 1 5.2653 -6.9955 1.8856 47 1 4.8758 -6.3447 0.2692 48 1 4.6648 -4.7495 2.3515 49 1 3.1677 -5.6465 2.6801 50 1 2.9868 -0.3179 1.5782 51 1 1.3273 -0.8196 2.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733429312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:14 Heat of formation + Delta-G solvation = 57.350077 kcal Electronic energy + Delta-G solvation = -31267.795537 eV Core-core repulsion = 27203.728394 eV Total energy + Delta-G solvation = -4064.067143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.62619 -40.79293 -38.67057 -37.12651 -35.14521 -34.57192 -32.79880 -32.43175 -30.49907 -30.19402 -29.47919 -27.82141 -26.54062 -25.45227 -24.72264 -23.41875 -22.76315 -22.52956 -21.54416 -20.64600 -19.45204 -18.88820 -18.05774 -17.37807 -16.96239 -16.41650 -16.17655 -15.86551 -15.41820 -15.19389 -14.91623 -14.62782 -14.40598 -14.06949 -14.00690 -13.65412 -13.26117 -13.20039 -13.18283 -12.88692 -12.71211 -12.57035 -12.35321 -12.20826 -12.14959 -11.80515 -11.77603 -11.59154 -11.35640 -11.29277 -11.08160 -10.89138 -10.67289 -10.65590 -10.53749 -10.41791 -10.29794 -10.03201 -9.91299 -9.71258 -9.48976 -8.94156 -8.75378 -6.98264 -5.83259 -3.11413 1.53504 2.10676 2.39762 2.59846 2.76300 3.39000 3.45452 3.47103 3.74102 3.89145 3.96582 4.06146 4.27848 4.33068 4.46397 4.50352 4.55486 4.59279 4.63851 4.76503 4.85708 4.92579 4.96986 5.00764 5.14471 5.21607 5.27631 5.35866 5.38526 5.44514 5.52628 5.61008 5.62083 5.62707 5.66271 5.79112 5.85173 5.89401 5.96564 6.00429 6.14149 6.21714 6.31209 6.37983 6.49515 6.58036 6.68305 6.76017 7.37185 7.65525 7.95506 8.35960 8.43407 9.47844 10.04147 10.39307 11.39637 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002019 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.331886 B =13867.823258 C =14273.296386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.117 4.117 14 C 0.094 3.906 15 N -0.611 5.611 16 C 0.528 3.472 17 O -0.544 6.544 18 C -0.103 4.103 19 H 0.097 0.903 20 C -0.123 4.123 21 C -0.029 4.029 22 C 0.177 3.823 23 N -0.294 5.294 24 N -0.304 5.304 25 C 0.148 3.852 26 N -0.470 5.470 27 C 0.106 3.894 28 C -0.119 4.119 29 C 0.118 3.882 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.218 0.782 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.070 0.930 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -21.791 7.104 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.155 4.155 14 C -0.029 4.029 15 N -0.344 5.344 16 C 0.316 3.684 17 O -0.421 6.421 18 C -0.125 4.125 19 H 0.115 0.885 20 C -0.162 4.162 21 C -0.069 4.069 22 C -0.091 4.091 23 N -0.134 5.134 24 N -0.144 5.144 25 C -0.139 4.139 26 N -0.161 5.161 27 C -0.016 4.016 28 C -0.157 4.157 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.234 0.766 46 H 0.126 0.874 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.643 -22.574 7.645 24.742 hybrid contribution 1.231 1.781 -0.153 2.170 sum 7.874 -20.793 7.492 23.462 Atomic orbital electron populations 1.21776 0.93258 1.00773 1.03223 1.21799 0.96475 0.96245 0.93299 1.20590 0.95863 0.88027 0.91468 1.42328 1.59842 1.11266 1.23858 1.19263 1.24530 0.88172 1.04994 0.91183 1.24717 1.00316 0.98342 0.97542 1.69649 1.38496 1.36310 1.13738 0.86130 0.77612 0.84932 0.77595 1.20587 1.21889 1.21879 1.22834 1.02955 0.91558 0.98117 1.22594 1.00259 0.99332 0.80684 1.48519 1.62405 1.11842 1.11648 1.20211 0.77062 0.85128 0.86036 1.90710 1.52284 1.82729 1.16393 1.20631 0.98857 0.93108 0.99871 0.88522 1.21538 0.96144 0.98099 1.00371 1.20542 1.04540 0.87014 0.94777 1.24873 0.87032 0.99389 0.97855 1.74247 1.24264 1.00460 1.14458 1.74540 1.05955 1.24077 1.09789 1.26348 1.00089 0.85309 1.02190 1.46355 1.19729 1.16868 1.33109 1.22520 0.87911 0.87591 1.03625 1.21502 1.01642 0.94654 0.97896 1.22060 1.00587 0.80876 0.96935 0.92642 0.90760 0.93507 0.96043 0.96135 0.78075 0.93551 0.89085 0.90174 0.90673 0.90798 0.90680 0.88537 0.87266 0.89070 0.76566 0.87367 0.88297 0.88072 0.90135 0.91174 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.29 37.16 0.31 -1.55 16 2 C -0.08 -1.09 0.61 -152.67 -0.09 -1.18 16 3 C 0.17 3.11 5.07 -4.04 -0.02 3.09 16 4 N -0.73 -16.96 5.13 -59.91 -0.31 -17.27 16 5 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 9 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C -0.12 -1.44 5.60 -24.59 -0.14 -1.58 16 14 C 0.09 0.84 4.83 -2.53 -0.01 0.83 16 15 N -0.61 -6.77 3.29 -170.52 -0.56 -7.33 16 16 C 0.53 5.89 7.06 -10.98 -0.08 5.81 16 17 O -0.54 -8.12 15.96 5.56 0.09 -8.04 16 18 C -0.10 -0.72 1.40 -93.87 -0.13 -0.85 16 19 H 0.10 0.48 7.16 -51.93 -0.37 0.11 16 20 C -0.12 -0.82 4.73 -27.41 -0.13 -0.95 16 21 C -0.03 -0.17 6.02 -26.95 -0.16 -0.34 16 22 C 0.18 1.62 7.03 -155.74 -1.09 0.52 16 23 N -0.29 -3.76 12.23 32.84 0.40 -3.35 16 24 N -0.30 -3.76 12.24 29.60 0.36 -3.40 16 25 C 0.15 1.20 12.83 -90.35 -1.16 0.04 16 26 N -0.47 -3.35 2.72 -114.24 -0.31 -3.67 16 27 C 0.11 0.41 6.53 -3.17 -0.02 0.39 16 28 C -0.12 -0.74 4.42 -27.48 -0.12 -0.87 16 29 C 0.12 1.54 6.04 -3.06 -0.02 1.52 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.21 6.84 -51.93 -0.36 0.86 16 32 H 0.05 0.55 7.42 -51.93 -0.39 0.17 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 9.25 6.29 -40.82 -0.26 9.00 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 1.18 8.04 -51.93 -0.42 0.77 16 38 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 39 H 0.07 0.50 7.30 -51.93 -0.38 0.12 16 40 H 0.07 0.58 6.39 -51.93 -0.33 0.25 16 41 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 42 H 0.10 0.60 4.56 -51.93 -0.24 0.37 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.35 7.89 -51.93 -0.41 -0.06 16 45 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.11 0.17 8.13 -51.93 -0.42 -0.25 16 47 H 0.10 0.24 7.87 -51.93 -0.41 -0.17 16 48 H 0.10 0.68 7.53 -51.93 -0.39 0.29 16 49 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 50 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 51 H 0.07 0.91 7.84 -51.93 -0.41 0.51 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -35.48 393.35 -9.90 -45.38 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.09 Total: 3.30 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.12 Total: -2.08 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.31 Total: -61.23 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.48 -9.90 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733429312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.728 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds