Wall clock time and date at job start Wed Apr 1 2020 04:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.64183 * 2 1 4 4 N 1.46498 * 109.46960 * 300.69848 * 3 2 1 5 5 C 1.36942 * 120.00078 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99689 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.99864 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00502 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46977 * 119.99953 * 9 7 5 12 12 H 1.48495 * 109.46580 * 239.99699 * 9 7 5 13 13 C 1.55150 * 110.72031 * 236.65962 * 2 1 3 14 14 C 1.54909 * 101.58324 * 277.14028 * 13 2 1 15 15 N 1.47418 * 104.83141 * 322.99191 * 14 13 2 16 16 C 1.34780 * 125.64875 * 204.16232 * 15 14 13 17 17 O 1.21276 * 120.00253 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00016 * 359.96151 * 16 15 14 19 19 H 1.09004 * 107.88224 * 56.54407 * 18 16 15 20 20 C 1.50955 * 108.02638 * 300.00035 * 18 16 15 21 21 C 1.53676 * 110.95741 * 165.71420 * 20 18 16 22 22 C 1.51886 * 106.89755 * 79.08591 * 21 20 18 23 23 N 1.29896 * 127.80968 * 114.85750 * 22 21 20 24 24 N 1.29025 * 109.22747 * 180.25241 * 23 22 21 25 25 C 1.30975 * 109.70768 * 359.92701 * 24 23 22 26 26 N 1.34598 * 124.57936 * 294.89049 * 22 21 20 27 27 C 1.47510 * 125.02311 * 359.51946 * 26 22 21 28 28 C 1.50861 * 108.03065 * 173.06416 * 18 16 15 29 29 C 1.47026 * 108.70544 * 24.12511 * 15 14 13 30 30 H 1.09001 * 109.46801 * 296.86147 * 1 2 3 31 31 H 1.09001 * 109.46998 * 56.85743 * 1 2 3 32 32 H 1.09000 * 109.47050 * 176.86035 * 1 2 3 33 33 H 1.08998 * 109.47130 * 60.69807 * 3 2 1 34 34 H 1.08996 * 109.47171 * 180.69896 * 3 2 1 35 35 H 0.96996 * 120.00093 * 0.02562 * 4 3 2 36 36 H 0.97002 * 120.00632 * 180.02562 * 8 7 5 37 37 H 1.09000 * 111.00546 * 35.21633 * 13 2 1 38 38 H 1.09000 * 111.00185 * 159.06456 * 13 2 1 39 39 H 1.09004 * 110.36773 * 204.15351 * 14 13 2 40 40 H 1.08998 * 110.45952 * 81.88054 * 14 13 2 41 41 H 1.09001 * 109.17807 * 286.09285 * 20 18 16 42 42 H 1.09000 * 109.18255 * 45.33320 * 20 18 16 43 43 H 1.08999 * 109.96481 * 198.42598 * 21 20 18 44 44 H 1.08994 * 109.97041 * 319.64366 * 21 20 18 45 45 H 1.08003 * 126.61326 * 179.86840 * 25 24 23 46 46 H 1.09003 * 109.93112 * 185.33799 * 27 26 22 47 47 H 1.08993 * 109.93142 * 306.54726 * 27 26 22 48 48 H 1.08996 * 109.14537 * 314.87016 * 28 18 16 49 49 H 1.09006 * 109.14419 * 74.02154 * 28 18 16 50 50 H 1.08999 * 109.88555 * 239.52038 * 29 15 14 51 51 H 1.09001 * 110.00749 * 118.42834 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.5817 2.1373 -1.1877 5 6 1.9372 3.4421 -1.4031 6 1 2.5767 3.9511 -0.6973 7 6 1.4746 4.1107 -2.5282 8 7 0.6947 3.4906 -3.3882 9 14 1.9601 5.8904 -2.8225 10 1 2.8370 6.3535 -1.7172 11 1 2.6892 5.9979 -4.1117 12 1 0.7395 6.7346 -2.8722 13 6 2.0790 -0.7976 -1.2123 14 6 2.0126 -2.2521 -0.6835 15 7 2.3715 -2.1518 0.7428 16 6 2.8861 -3.1448 1.4950 17 8 3.1452 -2.9486 2.6634 18 6 3.1394 -4.4990 0.8842 19 1 3.7986 -4.3616 0.0270 20 6 1.8226 -5.0373 0.3792 21 6 2.0418 -6.2336 -0.5602 22 6 2.3120 -7.4419 0.3194 23 7 1.5827 -8.5084 0.4534 24 7 2.1465 -9.3056 1.2967 25 6 3.2615 -8.7728 1.7306 26 7 3.3882 -7.5819 1.1155 27 6 4.4749 -6.5937 1.2516 28 6 3.8675 -5.3415 1.9020 29 6 2.0760 -0.7890 1.2087 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.7269 1.9491 0.8962 34 1 3.1591 1.4096 -0.0125 35 1 1.0070 1.6802 -1.8214 36 1 0.3718 3.9577 -4.1746 37 1 1.4397 -0.6699 -2.0858 38 1 3.1061 -0.5098 -1.4365 39 1 2.7294 -2.8809 -1.2118 40 1 1.0047 -2.6520 -0.7939 41 1 1.2164 -5.3547 1.2277 42 1 1.2970 -4.2496 -0.1606 43 1 1.1486 -6.4032 -1.1615 44 1 2.8969 -6.0453 -1.2094 45 1 3.9470 -9.2051 2.4446 46 1 5.2653 -6.9955 1.8856 47 1 4.8758 -6.3447 0.2692 48 1 4.6648 -4.7495 2.3515 49 1 3.1677 -5.6465 2.6801 50 1 2.9868 -0.3179 1.5782 51 1 1.3273 -0.8196 2.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733429312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:13 Heat of formation + Delta-G solvation = 35.565894 kcal Electronic energy + Delta-G solvation = -31268.740170 eV Core-core repulsion = 27203.728394 eV Total energy + Delta-G solvation = -4065.011776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.23494 -41.67166 -39.65840 -37.83911 -36.53906 -35.32769 -34.23824 -33.07282 -32.09556 -30.89043 -30.49624 -28.57468 -27.72060 -26.83099 -25.30556 -24.59832 -24.00008 -23.36826 -22.20544 -21.18333 -20.35053 -20.00163 -19.17453 -18.58106 -17.90172 -17.23796 -16.96394 -16.66693 -16.48105 -16.01996 -15.79170 -15.61885 -15.56730 -15.25362 -15.08956 -14.82128 -14.44744 -14.17015 -13.93861 -13.83117 -13.62733 -13.44015 -13.23813 -13.09027 -12.99169 -12.91749 -12.81905 -12.69977 -12.57711 -12.38479 -12.11641 -12.07208 -11.90774 -11.89708 -11.59669 -11.48903 -11.38943 -11.28642 -11.10068 -10.92702 -10.79658 -10.17561 -9.67837 -8.95754 -7.93584 -5.20427 0.97653 1.48259 1.49372 1.56306 1.58483 1.65387 1.90117 1.93165 2.57075 3.20929 3.25014 3.40166 3.50796 3.55103 3.61510 3.65622 3.81579 3.86687 3.89150 4.05892 4.18473 4.23481 4.26537 4.30026 4.32827 4.40299 4.42624 4.44268 4.49707 4.64113 4.70156 4.77080 4.81876 4.87977 4.88368 4.95019 5.00793 5.04389 5.07643 5.12341 5.13277 5.15472 5.23864 5.28910 5.30479 5.36768 5.49504 5.52538 6.02037 6.29525 6.51964 7.09018 7.37440 7.77911 8.12307 8.38267 9.29643 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002019 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.331886 B =13867.823258 C =14273.296386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C 0.167 3.833 4 N -0.734 5.734 5 C -0.242 4.242 6 H 0.070 0.930 7 C -0.070 4.070 8 N -0.964 5.964 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.295 1.295 13 C -0.115 4.115 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.523 3.477 17 O -0.588 6.588 18 C -0.095 4.095 19 H 0.133 0.867 20 C -0.114 4.114 21 C -0.023 4.023 22 C 0.176 3.824 23 N -0.348 5.348 24 N -0.360 5.360 25 C 0.159 3.841 26 N -0.467 5.467 27 C 0.109 3.891 28 C -0.114 4.114 29 C 0.125 3.875 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.013 0.987 34 H 0.018 0.982 35 H 0.380 0.620 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.256 0.744 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.098 0.902 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -22.868 6.495 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.071 4.071 3 C 0.040 3.960 4 N -0.378 5.378 5 C -0.375 4.375 6 H 0.088 0.912 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.220 1.220 12 H -0.223 1.223 13 C -0.153 4.153 14 C -0.021 4.021 15 N -0.343 5.343 16 C 0.314 3.686 17 O -0.468 6.468 18 C -0.115 4.115 19 H 0.150 0.850 20 C -0.152 4.152 21 C -0.063 4.063 22 C -0.094 4.094 23 N -0.187 5.187 24 N -0.199 5.199 25 C -0.130 4.130 26 N -0.157 5.157 27 C -0.011 4.011 28 C -0.153 4.153 29 C 0.001 3.999 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.272 0.728 46 H 0.155 0.845 47 H 0.145 0.855 48 H 0.117 0.883 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.563 -23.665 7.050 26.135 hybrid contribution 0.676 2.153 0.155 2.262 sum 9.239 -21.512 7.205 24.496 Atomic orbital electron populations 1.21694 0.93016 1.01949 1.01685 1.21614 0.96481 0.93873 0.95128 1.20685 0.95602 0.90447 0.89221 1.42445 1.59707 1.10604 1.25065 1.19602 1.23630 0.89593 1.04626 0.91196 1.25439 1.01064 1.02019 0.97786 1.69779 1.39912 1.37600 1.14169 0.85166 0.77078 0.80612 0.77451 1.19499 1.21970 1.22258 1.22772 1.01872 0.93650 0.97052 1.22739 1.02643 0.97472 0.79275 1.48579 1.62262 1.10901 1.12565 1.21029 0.75822 0.86264 0.85517 1.90695 1.54042 1.83608 1.18481 1.20717 0.99721 0.90232 1.00878 0.84954 1.21441 0.95552 0.98564 0.99654 1.20698 1.06210 0.85013 0.94349 1.25393 0.86962 0.99231 0.97832 1.74123 1.26242 1.02242 1.16087 1.74417 1.08182 1.25810 1.11443 1.27067 0.99195 0.85265 1.01438 1.46548 1.19941 1.16998 1.32256 1.22803 0.87164 0.85585 1.05595 1.21431 1.00922 0.95649 0.97249 1.21795 0.99740 0.82229 0.96129 0.93186 0.93353 0.90794 0.96893 0.96388 0.78665 0.93997 0.89729 0.91275 0.86857 0.88856 0.93406 0.87607 0.86992 0.85677 0.72838 0.84458 0.85538 0.88348 0.92902 0.92471 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.29 71.98 0.60 -2.86 16 2 C -0.07 -1.93 0.61 -50.99 -0.03 -1.96 16 3 C 0.17 6.25 5.07 86.38 0.44 6.69 16 4 N -0.73 -34.64 5.13 -343.46 -1.76 -36.41 16 5 C -0.24 -13.03 9.99 84.03 0.84 -12.19 16 6 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.96 -56.25 13.06 21.65 0.28 -55.97 16 9 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 13 C -0.12 -2.65 5.60 31.98 0.18 -2.47 16 14 C 0.10 1.44 4.83 86.86 0.42 1.86 16 15 N -0.61 -12.13 3.29 -811.80 -2.67 -14.81 16 16 C 0.52 10.61 7.06 87.66 0.62 11.23 16 17 O -0.59 -17.21 15.96 -3.02 -0.05 -17.26 16 18 C -0.09 -0.99 1.40 -12.90 -0.02 -1.01 16 19 H 0.13 0.52 7.16 -2.39 -0.02 0.50 16 20 C -0.11 -1.17 4.73 30.16 0.14 -1.03 16 21 C -0.02 -0.20 6.02 30.46 0.18 -0.02 16 22 C 0.18 2.88 7.03 138.83 0.98 3.85 16 23 N -0.35 -8.80 12.23 -50.00 -0.61 -9.41 16 24 N -0.36 -8.84 12.24 -60.28 -0.74 -9.57 16 25 C 0.16 2.28 12.83 180.25 2.31 4.59 16 26 N -0.47 -5.40 2.72 -515.35 -1.40 -6.80 16 27 C 0.11 0.38 6.53 86.39 0.56 0.95 16 28 C -0.11 -1.13 4.42 30.11 0.13 -0.99 16 29 C 0.12 3.17 6.04 86.73 0.52 3.69 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.59 6.84 -2.39 -0.02 1.57 16 32 H 0.07 1.60 7.42 -2.39 -0.02 1.59 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.38 18.58 6.29 -92.71 -0.58 17.99 16 36 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 38 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 39 H 0.11 0.85 7.30 -2.38 -0.02 0.84 16 40 H 0.09 1.06 6.39 -2.39 -0.02 1.05 16 41 H 0.05 0.78 7.91 -2.39 -0.02 0.76 16 42 H 0.11 0.91 4.56 -2.39 -0.01 0.90 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.13 0.25 7.89 -2.39 -0.02 0.23 16 45 H 0.26 1.11 8.06 -2.91 -0.02 1.09 16 46 H 0.14 -0.24 8.13 -2.39 -0.02 -0.26 16 47 H 0.13 -0.15 7.87 -2.39 -0.02 -0.17 16 48 H 0.10 1.08 7.53 -2.39 -0.02 1.06 16 49 H 0.05 0.83 8.08 -2.38 -0.02 0.82 16 50 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 51 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 Total: -1.00 -81.75 393.35 3.78 -77.97 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.36 Total: 18.43 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 8.35 Total: 6.89 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.90 Total: -132.97 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -81.75 3.78 -77.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733429312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.534 kcal (2) G-P(sol) polarization free energy of solvation -81.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds