Wall clock time and date at job start Wed Apr 1 2020 04:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.45824 * 2 1 4 4 N 1.46492 * 109.47229 * 60.02745 * 3 2 1 5 5 C 1.34782 * 120.00079 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99785 * 180.02562 * 5 4 3 8 8 H 1.08999 * 109.45499 * 300.04135 * 7 5 4 9 9 C 1.53259 * 109.43515 * 180.12184 * 7 5 4 10 10 C 1.53457 * 109.24711 * 170.54777 * 9 7 5 11 11 C 1.50799 * 108.17484 * 48.70283 * 10 9 7 12 12 N 1.29836 * 128.52901 * 164.09674 * 11 10 9 13 13 N 1.28905 * 109.48130 * 180.11354 * 12 11 10 14 14 C 1.30836 * 109.74028 * 359.96018 * 13 12 11 15 15 N 1.34691 * 107.06861 * 359.96364 * 14 13 12 16 16 C 1.46256 * 128.84200 * 180.15752 * 15 14 13 17 17 C 1.53040 * 109.45013 * 119.96780 * 2 1 3 18 18 C 1.53188 * 109.31320 * 58.64466 * 17 2 1 19 19 N 1.46932 * 108.77498 * 54.63720 * 18 17 2 20 20 C 1.36932 * 120.62903 * 126.36679 * 19 18 17 21 21 H 1.07999 * 120.00640 * 331.85976 * 20 19 18 22 22 C 1.38813 * 119.99960 * 151.86611 * 20 19 18 23 23 N 1.31627 * 120.00008 * 343.06252 * 22 20 19 24 24 Si 1.86804 * 120.00239 * 163.06790 * 22 20 19 25 25 H 1.48493 * 109.47095 * 89.99760 * 24 22 20 26 26 H 1.48498 * 109.46844 * 209.99873 * 24 22 20 27 27 H 1.48503 * 109.46686 * 329.99359 * 24 22 20 28 28 C 1.46927 * 118.73996 * 306.39285 * 19 18 17 29 29 C 1.53044 * 109.45635 * 240.02818 * 2 1 3 30 30 H 1.09004 * 109.46724 * 59.99937 * 1 2 3 31 31 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47198 * 300.00242 * 1 2 3 33 33 H 1.09003 * 109.47461 * 300.02653 * 3 2 1 34 34 H 1.08998 * 109.46882 * 180.02562 * 3 2 1 35 35 H 0.97002 * 120.00099 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.55491 * 50.59526 * 9 7 5 37 37 H 1.09005 * 109.50166 * 290.46526 * 9 7 5 38 38 H 1.09003 * 109.73095 * 289.01892 * 10 9 7 39 39 H 1.09003 * 109.72784 * 168.38515 * 10 9 7 40 40 H 1.08000 * 126.46427 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.59883 * 282.65822 * 16 15 14 42 42 H 1.09001 * 109.59592 * 42.96435 * 16 15 14 43 43 H 1.08992 * 109.49457 * 178.60168 * 17 2 1 44 44 H 1.09005 * 109.49455 * 298.69818 * 17 2 1 45 45 H 1.08999 * 109.58859 * 294.85383 * 18 17 2 46 46 H 1.09003 * 109.70517 * 174.49238 * 18 17 2 47 47 H 0.96996 * 120.00204 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58103 * 293.82175 * 28 19 18 49 49 H 1.08987 * 109.70579 * 173.46604 * 28 19 18 50 50 H 1.08997 * 109.49640 * 61.31080 * 29 2 1 51 51 H 1.09008 * 109.49308 * 181.40654 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1964 5 6 1.8777 3.4232 1.4100 6 8 2.5744 4.0128 0.6115 7 6 1.3762 4.1331 2.6411 8 1 0.2862 4.1323 2.6420 9 6 1.8851 5.5787 2.6391 10 6 1.1867 6.3624 3.7584 11 6 1.2751 5.5511 5.0265 12 7 1.0766 5.9382 6.2498 13 7 1.2522 4.9426 7.0496 14 6 1.5707 3.8752 6.3632 15 7 1.5922 4.2321 5.0646 16 6 1.8883 3.4095 3.8921 17 6 2.0397 -0.7208 1.2501 18 6 1.4991 -2.1541 1.2643 19 7 1.8620 -2.8089 0.0001 20 6 2.5261 -4.0064 0.0002 21 1 3.1739 -4.2647 0.8249 22 6 2.3669 -4.8885 -1.0597 23 7 1.3525 -4.7476 -1.8865 24 14 3.5923 -6.2756 -1.3127 25 1 3.1395 -7.4780 -0.5682 26 1 3.6859 -6.5955 -2.7598 27 1 4.9256 -5.8557 -0.8114 28 6 1.4994 -2.1542 -1.2643 29 6 2.0398 -0.7209 -1.2501 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6759 1.9566 -0.8897 34 1 3.1297 1.4428 -0.0005 35 1 0.9942 1.6614 1.8349 36 1 1.6636 6.0420 1.6777 37 1 2.9620 5.5856 2.8073 38 1 0.1409 6.5241 3.4972 39 1 1.6831 7.3224 3.9004 40 1 1.7771 2.8932 6.7626 41 1 2.9650 3.2600 3.8128 42 1 1.3913 2.4441 3.9878 43 1 3.1293 -0.7430 1.2384 44 1 1.6955 -0.1934 2.1399 45 1 0.4141 -2.1344 1.3672 46 1 1.9354 -2.7032 2.0987 47 1 1.2410 -5.3642 -2.6270 48 1 0.4144 -2.1345 -1.3674 49 1 1.9359 -2.7011 -2.0998 50 1 1.6959 -0.1935 -2.1398 51 1 3.1296 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733453462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:55 Heat of formation + Delta-G solvation = 54.409558 kcal Electronic energy + Delta-G solvation = -31282.467488 eV Core-core repulsion = 27218.272835 eV Total energy + Delta-G solvation = -4064.194653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.65511 -40.52625 -38.85192 -37.15439 -35.30704 -34.05001 -33.33825 -31.68592 -31.02350 -29.95749 -29.54491 -27.25447 -26.97082 -25.45630 -24.28737 -23.46965 -22.65293 -22.42290 -21.11455 -20.76188 -19.91117 -18.22260 -17.89696 -17.46334 -16.71519 -16.44316 -16.10014 -15.94095 -15.21408 -14.93103 -14.79783 -14.78054 -14.46141 -14.37931 -14.02520 -13.86382 -13.62025 -13.49882 -13.09063 -12.78340 -12.68821 -12.43113 -12.11826 -11.96873 -11.75519 -11.55460 -11.55119 -11.43234 -11.29902 -10.87647 -10.77653 -10.70420 -10.60884 -10.55157 -10.37661 -10.29947 -10.21689 -9.90495 -9.62255 -9.53610 -9.52118 -9.24395 -8.52409 -6.73602 -5.86736 -3.29005 1.46260 1.93869 2.28408 2.55554 2.83681 3.31680 3.39469 3.41241 3.62497 3.86410 3.93588 4.00735 4.31470 4.42803 4.47609 4.51051 4.63383 4.73598 4.89797 4.93456 4.98629 5.07559 5.09341 5.25656 5.32035 5.40889 5.44291 5.52605 5.58933 5.60296 5.70622 5.77048 5.79996 5.90471 5.96492 5.98484 6.19140 6.22824 6.33139 6.37158 6.44657 6.51157 6.55980 6.65726 6.74749 6.86399 7.19055 7.28355 7.59039 7.72365 7.87038 8.37550 8.39131 9.13930 9.77246 10.33417 11.21743 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002181 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.908689 B =12834.181662 C =13659.783788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.128 3.872 4 N -0.719 5.719 5 C 0.519 3.481 6 O -0.530 6.530 7 C -0.124 4.124 8 H 0.111 0.889 9 C -0.106 4.106 10 C -0.035 4.035 11 C 0.177 3.823 12 N -0.293 5.293 13 N -0.301 5.301 14 C 0.157 3.843 15 N -0.472 5.472 16 C 0.114 3.886 17 C -0.121 4.121 18 C 0.145 3.855 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.172 3.828 29 C -0.129 4.129 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.221 0.779 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.019 0.981 46 H 0.051 0.949 47 H 0.254 0.746 48 H 0.022 0.978 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 17.888 8.235 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C 0.005 3.995 4 N -0.371 5.371 5 C 0.303 3.697 6 O -0.406 6.406 7 C -0.146 4.146 8 H 0.129 0.871 9 C -0.145 4.145 10 C -0.074 4.074 11 C -0.091 4.091 12 N -0.132 5.132 13 N -0.140 5.140 14 C -0.131 4.131 15 N -0.163 5.163 16 C -0.010 4.010 17 C -0.160 4.160 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.046 3.954 29 C -0.169 4.169 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.530 19.035 8.696 20.983 hybrid contribution 0.607 -2.106 -0.898 2.368 sum -0.923 16.929 7.798 18.662 Atomic orbital electron populations 1.21947 0.94661 1.03150 1.00175 1.20709 0.95772 0.91863 0.98047 1.21637 0.99147 0.92374 0.86376 1.46194 1.53155 1.11498 1.26245 1.20024 0.80715 0.82083 0.86904 1.90745 1.37295 1.65824 1.46770 1.21730 1.03421 0.97183 0.92245 0.87071 1.21583 1.01224 0.91813 0.99863 1.20289 1.03305 0.97570 0.86247 1.24883 1.02910 0.83336 0.97929 1.74085 1.19214 1.22110 0.97805 1.74507 1.17560 0.96063 1.25901 1.26345 1.04256 1.02462 0.80007 1.46130 1.51689 1.10303 1.08229 1.21953 1.03289 0.94036 0.81717 1.22063 1.00812 0.98306 0.94824 1.20912 0.96309 0.90660 0.90289 1.44012 1.66787 1.21146 0.99379 1.19145 1.19143 0.93445 1.06599 0.91832 1.25036 0.97070 0.97524 0.99913 1.70018 1.27863 1.38591 1.18177 0.86329 0.81284 0.82181 0.77170 1.21391 1.21533 1.20511 1.20780 0.96594 0.87638 0.90372 1.22203 1.00691 0.99587 0.94368 0.93117 0.90619 0.94063 0.91524 0.91419 0.76428 0.88306 0.90224 0.88423 0.87634 0.76277 0.88287 0.87754 0.92137 0.93818 0.96275 0.93038 0.93601 0.96024 0.89535 0.93024 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.54 37.16 0.28 -1.52 16 2 C -0.06 -0.85 0.53 -154.46 -0.08 -0.93 16 3 C 0.13 1.48 4.56 -4.05 -0.02 1.46 16 4 N -0.72 -6.32 4.85 -60.30 -0.29 -6.61 16 5 C 0.52 4.73 7.14 -10.98 -0.08 4.65 16 6 O -0.53 -6.96 15.83 5.56 0.09 -6.87 16 7 C -0.12 -0.74 2.54 -91.47 -0.23 -0.97 16 8 H 0.11 0.53 8.12 -51.93 -0.42 0.11 16 9 C -0.11 -0.66 4.69 -26.36 -0.12 -0.78 16 10 C -0.03 -0.21 6.33 -27.60 -0.17 -0.38 16 11 C 0.18 1.65 7.75 -155.31 -1.20 0.44 16 12 N -0.29 -3.69 12.21 32.76 0.40 -3.29 16 13 N -0.30 -3.73 12.23 29.58 0.36 -3.37 16 14 C 0.16 1.32 12.83 -90.41 -1.16 0.16 16 15 N -0.47 -3.61 3.11 -115.52 -0.36 -3.97 16 16 C 0.11 0.60 6.15 -4.01 -0.02 0.57 16 17 C -0.12 -1.69 4.75 -26.61 -0.13 -1.81 16 18 C 0.14 2.65 6.05 -3.71 -0.02 2.63 16 19 N -0.59 -13.53 2.99 -172.32 -0.52 -14.05 16 20 C -0.25 -6.59 9.58 -15.06 -0.14 -6.74 16 21 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -25.09 11.20 55.49 0.62 -24.46 16 24 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.17 3.72 4.83 -3.71 -0.02 3.70 16 29 C -0.13 -2.15 4.91 -26.61 -0.13 -2.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.18 4.98 -51.93 -0.26 0.92 16 32 H 0.04 0.41 6.86 -51.93 -0.36 0.06 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.40 2.75 5.81 -40.82 -0.24 2.52 16 36 H 0.10 0.63 7.80 -51.93 -0.40 0.23 16 37 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.10 0.34 7.87 -51.93 -0.41 -0.07 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.47 6.82 -51.93 -0.35 0.11 16 45 H 0.02 0.35 6.69 -51.93 -0.35 0.01 16 46 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 49 H 0.09 2.17 6.06 -51.94 -0.31 1.86 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -33.46 389.67 -10.26 -43.72 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.06 Total: -1.08 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.34 Total: -1.80 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.22 Total: -55.76 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.09 Total: -6.87 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.46 -10.26 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733453462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.132 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds