Wall clock time and date at job start Wed Apr 1 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.45824 * 2 1 4 4 N 1.46492 * 109.47229 * 60.02745 * 3 2 1 5 5 C 1.34782 * 120.00079 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99785 * 180.02562 * 5 4 3 8 8 H 1.08999 * 109.45499 * 300.04135 * 7 5 4 9 9 C 1.53259 * 109.43515 * 180.12184 * 7 5 4 10 10 C 1.53457 * 109.24711 * 170.54777 * 9 7 5 11 11 C 1.50799 * 108.17484 * 48.70283 * 10 9 7 12 12 N 1.29836 * 128.52901 * 164.09674 * 11 10 9 13 13 N 1.28905 * 109.48130 * 180.11354 * 12 11 10 14 14 C 1.30836 * 109.74028 * 359.96018 * 13 12 11 15 15 N 1.34691 * 107.06861 * 359.96364 * 14 13 12 16 16 C 1.46256 * 128.84200 * 180.15752 * 15 14 13 17 17 C 1.53040 * 109.45013 * 119.96780 * 2 1 3 18 18 C 1.53188 * 109.31320 * 58.64466 * 17 2 1 19 19 N 1.46932 * 108.77498 * 54.63720 * 18 17 2 20 20 C 1.36932 * 120.62903 * 126.36679 * 19 18 17 21 21 H 1.07999 * 120.00640 * 331.85976 * 20 19 18 22 22 C 1.38813 * 119.99960 * 151.86611 * 20 19 18 23 23 N 1.31627 * 120.00008 * 343.06252 * 22 20 19 24 24 Si 1.86804 * 120.00239 * 163.06790 * 22 20 19 25 25 H 1.48493 * 109.47095 * 89.99760 * 24 22 20 26 26 H 1.48498 * 109.46844 * 209.99873 * 24 22 20 27 27 H 1.48503 * 109.46686 * 329.99359 * 24 22 20 28 28 C 1.46927 * 118.73996 * 306.39285 * 19 18 17 29 29 C 1.53044 * 109.45635 * 240.02818 * 2 1 3 30 30 H 1.09004 * 109.46724 * 59.99937 * 1 2 3 31 31 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47198 * 300.00242 * 1 2 3 33 33 H 1.09003 * 109.47461 * 300.02653 * 3 2 1 34 34 H 1.08998 * 109.46882 * 180.02562 * 3 2 1 35 35 H 0.97002 * 120.00099 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.55491 * 50.59526 * 9 7 5 37 37 H 1.09005 * 109.50166 * 290.46526 * 9 7 5 38 38 H 1.09003 * 109.73095 * 289.01892 * 10 9 7 39 39 H 1.09003 * 109.72784 * 168.38515 * 10 9 7 40 40 H 1.08000 * 126.46427 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.59883 * 282.65822 * 16 15 14 42 42 H 1.09001 * 109.59592 * 42.96435 * 16 15 14 43 43 H 1.08992 * 109.49457 * 178.60168 * 17 2 1 44 44 H 1.09005 * 109.49455 * 298.69818 * 17 2 1 45 45 H 1.08999 * 109.58859 * 294.85383 * 18 17 2 46 46 H 1.09003 * 109.70517 * 174.49238 * 18 17 2 47 47 H 0.96996 * 120.00204 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.58103 * 293.82175 * 28 19 18 49 49 H 1.08987 * 109.70579 * 173.46604 * 28 19 18 50 50 H 1.08997 * 109.49640 * 61.31080 * 29 2 1 51 51 H 1.09008 * 109.49308 * 181.40654 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1964 5 6 1.8777 3.4232 1.4100 6 8 2.5744 4.0128 0.6115 7 6 1.3762 4.1331 2.6411 8 1 0.2862 4.1323 2.6420 9 6 1.8851 5.5787 2.6391 10 6 1.1867 6.3624 3.7584 11 6 1.2751 5.5511 5.0265 12 7 1.0766 5.9382 6.2498 13 7 1.2522 4.9426 7.0496 14 6 1.5707 3.8752 6.3632 15 7 1.5922 4.2321 5.0646 16 6 1.8883 3.4095 3.8921 17 6 2.0397 -0.7208 1.2501 18 6 1.4991 -2.1541 1.2643 19 7 1.8620 -2.8089 0.0001 20 6 2.5261 -4.0064 0.0002 21 1 3.1739 -4.2647 0.8249 22 6 2.3669 -4.8885 -1.0597 23 7 1.3525 -4.7476 -1.8865 24 14 3.5923 -6.2756 -1.3127 25 1 3.1395 -7.4780 -0.5682 26 1 3.6859 -6.5955 -2.7598 27 1 4.9256 -5.8557 -0.8114 28 6 1.4994 -2.1542 -1.2643 29 6 2.0398 -0.7209 -1.2501 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6759 1.9566 -0.8897 34 1 3.1297 1.4428 -0.0005 35 1 0.9942 1.6614 1.8349 36 1 1.6636 6.0420 1.6777 37 1 2.9620 5.5856 2.8073 38 1 0.1409 6.5241 3.4972 39 1 1.6831 7.3224 3.9004 40 1 1.7771 2.8932 6.7626 41 1 2.9650 3.2600 3.8128 42 1 1.3913 2.4441 3.9878 43 1 3.1293 -0.7430 1.2384 44 1 1.6955 -0.1934 2.1399 45 1 0.4141 -2.1344 1.3672 46 1 1.9354 -2.7032 2.0987 47 1 1.2410 -5.3642 -2.6270 48 1 0.4144 -2.1345 -1.3674 49 1 1.9359 -2.7011 -2.0998 50 1 1.6959 -0.1935 -2.1398 51 1 3.1296 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733453462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:54 Heat of formation + Delta-G solvation = 34.601530 kcal Electronic energy + Delta-G solvation = -31283.326429 eV Core-core repulsion = 27218.272835 eV Total energy + Delta-G solvation = -4065.053594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.29115 -41.33700 -40.03067 -37.81783 -36.60848 -34.75704 -34.51527 -32.91734 -32.09672 -31.43255 -30.19783 -28.66988 -27.94895 -26.21105 -25.58792 -24.30781 -23.77203 -23.28361 -22.44867 -21.66759 -20.49911 -19.60495 -18.66332 -18.20070 -17.95873 -17.29568 -17.01086 -16.68462 -16.59753 -15.99790 -15.68239 -15.52456 -15.37568 -15.23845 -15.03910 -15.00295 -14.92046 -14.60299 -14.41875 -14.05105 -13.50677 -13.24774 -13.00593 -12.97910 -12.96277 -12.67408 -12.62452 -12.54052 -12.35172 -12.26872 -12.17718 -12.04214 -11.90769 -11.78093 -11.49426 -11.35996 -11.16299 -11.10720 -11.00789 -10.89755 -10.47932 -10.20683 -10.07559 -8.60905 -7.85774 -5.29303 0.87785 1.36404 1.45208 1.47823 1.56094 1.64668 1.85995 2.11973 2.51852 3.12975 3.28877 3.33836 3.44208 3.54274 3.74520 3.82604 3.87486 3.88163 3.98336 4.02270 4.09630 4.19401 4.29237 4.43090 4.48254 4.56702 4.59193 4.63625 4.76947 4.77593 4.84031 4.85758 4.86831 4.97210 4.99495 5.00711 5.09330 5.10666 5.17788 5.22324 5.25413 5.34557 5.44077 5.47028 5.53313 5.59517 5.68913 5.87287 5.92478 6.42044 6.51411 7.18635 7.19087 7.71620 7.92385 8.41650 9.19797 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.002181 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.908689 B =12834.181662 C =13659.783788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.142 3.858 4 N -0.709 5.709 5 C 0.526 3.474 6 O -0.571 6.571 7 C -0.113 4.113 8 H 0.134 0.866 9 C -0.101 4.101 10 C -0.029 4.029 11 C 0.176 3.824 12 N -0.340 5.340 13 N -0.353 5.353 14 C 0.169 3.831 15 N -0.469 5.469 16 C 0.112 3.888 17 C -0.109 4.109 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.258 4.258 21 H 0.064 0.936 22 C -0.051 4.051 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.180 3.820 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.413 0.587 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.258 0.742 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.047 0.953 47 H 0.248 0.752 48 H 0.005 0.995 49 H 0.044 0.956 50 H 0.064 0.936 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 18.892 9.489 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C 0.018 3.982 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.450 6.450 7 C -0.135 4.135 8 H 0.151 0.849 9 C -0.140 4.140 10 C -0.068 4.068 11 C -0.093 4.093 12 N -0.179 5.179 13 N -0.191 5.191 14 C -0.120 4.120 15 N -0.160 5.160 16 C -0.010 4.010 17 C -0.148 4.148 18 C 0.014 3.986 19 N -0.333 5.333 20 C -0.389 4.389 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.788 3.212 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.198 1.198 28 C 0.054 3.946 29 C -0.160 4.160 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.274 0.726 41 H 0.120 0.880 42 H 0.154 0.846 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.708 20.052 9.998 22.471 hybrid contribution 0.655 -2.424 -1.281 2.819 sum -1.053 17.628 8.717 19.694 Atomic orbital electron populations 1.21880 0.93665 1.01664 1.02221 1.20545 0.96359 0.92607 0.95851 1.21249 0.98453 0.90921 0.87594 1.46004 1.53104 1.11479 1.25535 1.20409 0.79617 0.81680 0.87149 1.90747 1.39128 1.66675 1.48435 1.21656 1.04553 0.96382 0.90908 0.84863 1.21514 1.00543 0.92232 0.99710 1.20383 1.04392 0.97286 0.84751 1.25347 1.01763 0.84278 0.97895 1.73980 1.21344 1.23276 0.99291 1.74401 1.19988 0.97339 1.27397 1.27038 1.01999 1.02895 0.80032 1.46237 1.51144 1.09926 1.08660 1.22167 1.03937 0.94671 0.80270 1.21930 1.00053 0.95752 0.97022 1.21113 0.96665 0.92860 0.87966 1.44280 1.66910 1.20824 1.01334 1.19466 1.18826 0.94348 1.06239 0.91874 1.25716 0.98669 0.99989 1.00244 1.70164 1.29540 1.39549 1.18717 0.85397 0.79609 0.79687 0.76485 1.21239 1.22145 1.19753 1.20537 0.95312 0.89917 0.88809 1.22016 0.99849 0.96909 0.97222 0.92697 0.93776 0.90505 0.91886 0.92441 0.74824 0.88397 0.91381 0.86740 0.87180 0.72594 0.88005 0.84645 0.93147 0.89139 0.95906 0.93410 0.94281 0.97722 0.93788 0.91729 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.54 71.98 0.54 -2.53 16 2 C -0.05 -1.28 0.53 -52.15 -0.03 -1.31 16 3 C 0.14 2.84 4.56 86.38 0.39 3.24 16 4 N -0.71 -9.27 4.85 -463.07 -2.25 -11.52 16 5 C 0.53 7.63 7.14 87.66 0.63 8.25 16 6 O -0.57 -13.60 15.83 -3.02 -0.05 -13.65 16 7 C -0.11 -0.90 2.54 -11.35 -0.03 -0.93 16 8 H 0.13 0.57 8.12 -2.39 -0.02 0.55 16 9 C -0.10 -0.99 4.69 30.83 0.14 -0.85 16 10 C -0.03 -0.28 6.33 30.03 0.19 -0.09 16 11 C 0.18 2.93 7.75 138.14 1.07 4.00 16 12 N -0.34 -8.34 12.21 -50.28 -0.61 -8.96 16 13 N -0.35 -8.41 12.23 -60.31 -0.74 -9.14 16 14 C 0.17 2.39 12.83 180.28 2.31 4.70 16 15 N -0.47 -5.67 3.11 -519.40 -1.62 -7.29 16 16 C 0.11 0.67 6.15 86.53 0.53 1.21 16 17 C -0.11 -2.69 4.75 30.67 0.15 -2.54 16 18 C 0.14 4.88 6.05 86.36 0.52 5.40 16 19 N -0.61 -28.16 2.99 -699.11 -2.09 -30.25 16 20 C -0.26 -13.59 9.58 84.03 0.81 -12.78 16 21 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 22 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 23 N -0.93 -53.72 11.20 21.65 0.24 -53.48 16 24 Si 0.96 43.86 29.59 68.60 2.03 45.89 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.18 7.99 4.83 86.36 0.42 8.41 16 29 C -0.12 -3.97 4.91 30.67 0.15 -3.82 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.30 4.98 -2.39 -0.01 1.28 16 32 H 0.08 1.16 6.86 -2.39 -0.02 1.15 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.41 3.21 5.81 -92.71 -0.54 2.67 16 36 H 0.10 1.02 7.80 -2.39 -0.02 1.01 16 37 H 0.07 0.84 8.12 -2.38 -0.02 0.82 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.26 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 42 H 0.14 0.03 7.87 -2.39 -0.02 0.01 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.42 6.82 -2.38 -0.02 1.41 16 45 H 0.02 0.80 6.69 -2.39 -0.02 0.78 16 46 H 0.05 1.68 7.93 -2.39 -0.02 1.66 16 47 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.00 0.22 6.69 -2.39 -0.02 0.21 16 49 H 0.04 2.31 6.06 -2.39 -0.01 2.30 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -77.79 389.67 3.54 -74.26 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.40 Total: 6.11 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 8.21 Total: 8.03 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -7.06 Total: -120.63 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.05 Total: -13.65 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -77.79 3.54 -74.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733453462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.857 kcal (2) G-P(sol) polarization free energy of solvation -77.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds