Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29102 * 126.00832 * 2 1 4 4 N 1.29020 * 110.26129 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63280 * 359.97415 * 4 3 2 6 6 C 1.34395 * 126.00226 * 180.02562 * 2 1 3 7 7 C 1.50533 * 129.26013 * 0.11817 * 6 2 1 8 8 C 1.53432 * 108.32629 * 163.56969 * 7 6 2 9 9 H 1.09001 * 109.45823 * 289.70939 * 8 7 6 10 10 C 1.50703 * 109.45802 * 169.74275 * 8 7 6 11 11 O 1.21275 * 120.00044 * 337.88952 * 10 8 7 12 12 N 1.34780 * 119.99701 * 157.89047 * 10 8 7 13 13 C 1.46930 * 120.62355 * 175.49796 * 12 10 8 14 14 C 1.53198 * 108.76801 * 126.37236 * 13 12 10 15 15 C 1.53033 * 109.31564 * 54.63394 * 14 13 12 16 16 C 1.53001 * 109.46324 * 178.62065 * 15 14 13 17 17 N 1.46509 * 109.46025 * 58.65449 * 15 14 13 18 18 C 1.36939 * 119.99856 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00063 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99813 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00193 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99771 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47151 * 269.99903 * 22 20 18 24 24 H 1.48498 * 109.47220 * 30.00650 * 22 20 18 25 25 H 1.48500 * 109.46749 * 150.00219 * 22 20 18 26 26 C 1.53038 * 109.54067 * 298.63535 * 15 14 13 27 27 C 1.46924 * 120.63301 * 355.48000 * 12 10 8 28 28 C 1.53107 * 109.54130 * 49.72548 * 8 7 6 29 29 C 1.50600 * 129.16205 * 180.21837 * 5 4 3 30 30 H 1.09002 * 109.47527 * 269.98021 * 1 2 3 31 31 H 1.09004 * 109.47172 * 29.98004 * 1 2 3 32 32 H 1.09002 * 109.47156 * 149.97926 * 1 2 3 33 33 H 1.08998 * 109.68805 * 43.86765 * 7 6 2 34 34 H 1.08999 * 109.73051 * 283.30166 * 7 6 2 35 35 H 1.08995 * 109.58929 * 6.58467 * 13 12 10 36 36 H 1.08996 * 109.70491 * 246.22041 * 13 12 10 37 37 H 1.08996 * 109.49766 * 294.67647 * 14 13 12 38 38 H 1.09007 * 109.51971 * 174.59945 * 14 13 12 39 39 H 1.08994 * 109.47246 * 300.03339 * 16 15 14 40 40 H 1.09008 * 109.46362 * 60.03124 * 16 15 14 41 41 H 1.08996 * 109.47460 * 180.02562 * 16 15 14 42 42 H 0.96993 * 119.99729 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00124 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.50134 * 181.31781 * 26 15 14 45 45 H 1.09000 * 109.49332 * 301.41285 * 26 15 14 46 46 H 1.08992 * 109.58860 * 353.41584 * 27 12 10 47 47 H 1.09001 * 109.58590 * 113.70251 * 27 12 10 48 48 H 1.09005 * 109.45336 * 49.96078 * 28 8 7 49 49 H 1.08993 * 109.45715 * 169.89079 * 28 8 7 50 50 H 1.09004 * 109.68901 * 283.09013 * 29 5 4 51 51 H 1.08996 * 109.69131 * 43.66782 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2550 -1.0872 -0.0005 7 6 1.8720 -2.5431 -0.0035 8 6 3.1011 -3.3643 -0.4148 9 1 3.3137 -3.1959 -1.4706 10 6 2.8263 -4.8282 -0.1855 11 8 1.9698 -5.1682 0.6029 12 7 3.5326 -5.7596 -0.8565 13 6 3.3456 -7.1890 -0.5726 14 6 3.0328 -7.9154 -1.8847 15 6 4.1342 -7.6158 -2.9041 16 6 3.8430 -8.3672 -4.2047 17 7 5.4266 -8.0505 -2.3682 18 6 6.5662 -7.8826 -3.1087 19 1 6.5122 -7.4302 -4.0879 20 6 7.7907 -8.2950 -2.6013 21 7 8.8861 -8.1332 -3.3127 22 14 7.8839 -9.0782 -0.9079 23 1 8.0961 -8.0226 0.1148 24 1 6.6149 -9.7951 -0.6236 25 1 9.0149 -10.0397 -0.8689 26 6 4.1779 -6.1117 -3.1832 27 6 4.5036 -5.3649 -1.8860 28 6 4.3081 -2.9345 0.4233 29 6 4.7468 -1.5243 0.0068 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.0643 -2.7088 -0.7164 34 1 1.5485 -2.8405 0.9939 35 1 2.5165 -7.3180 0.1231 36 1 4.2562 -7.5992 -0.1361 37 1 2.0745 -7.5699 -2.2723 38 1 2.9864 -8.9894 -1.7043 39 1 3.8125 -9.4385 -4.0064 40 1 2.8815 -8.0439 -4.6036 41 1 4.6276 -8.1543 -4.9308 42 1 5.4751 -8.4565 -1.4887 43 1 9.7417 -8.4210 -2.9579 44 1 4.9467 -5.9019 -3.9268 45 1 3.2088 -5.7832 -3.5587 46 1 4.4386 -4.2904 -2.0568 47 1 5.5103 -5.6223 -1.5567 48 1 4.0355 -2.9338 1.4787 49 1 5.1295 -3.6324 0.2616 50 1 5.1844 -1.5547 -0.9910 51 1 5.4792 -1.1428 0.7182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733866326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = 74.418258 kcal Electronic energy + Delta-G solvation = -32185.971607 eV Core-core repulsion = 28122.644596 eV Total energy + Delta-G solvation = -4063.327011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.60579 -40.46798 -38.32956 -36.69723 -35.13705 -34.69448 -32.42666 -31.30236 -30.81233 -30.27771 -29.75569 -28.15552 -27.85787 -25.05501 -23.82741 -23.44664 -23.07033 -22.33196 -21.61551 -20.34759 -19.22196 -18.19072 -17.85455 -17.40488 -17.21881 -16.76593 -15.77149 -15.29375 -14.90044 -14.60985 -14.38016 -14.18970 -14.13530 -14.01596 -13.86411 -13.69931 -13.55492 -13.34417 -13.11807 -13.02295 -12.64447 -12.45529 -12.24219 -12.08400 -11.94416 -11.70503 -11.46482 -11.35035 -11.34425 -11.20545 -11.03466 -10.91504 -10.85594 -10.73995 -10.42711 -10.23583 -10.15836 -9.86969 -9.60211 -9.52624 -9.02423 -9.01202 -8.41142 -7.33247 -5.82710 -3.18549 1.34339 2.06817 2.36214 2.63236 3.06602 3.31341 3.33943 3.41380 3.90762 4.14253 4.31938 4.46487 4.52941 4.55288 4.58972 4.62999 4.84821 4.85764 4.93265 5.05907 5.13214 5.19202 5.22292 5.24742 5.33521 5.38822 5.46338 5.56155 5.59188 5.62269 5.64475 5.80372 5.83030 5.87440 5.89416 5.94401 5.99949 6.08548 6.11221 6.23669 6.30067 6.33248 6.35787 6.48069 6.57796 6.65387 6.89030 6.95516 7.56353 7.92750 8.21232 8.31762 8.36548 9.14260 9.87162 10.06892 11.35397 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002973 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.689671 B = 9415.488533 C =10100.686746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.285 5.285 3 N -0.100 5.100 4 N -0.261 5.261 5 C -0.018 4.018 6 C -0.015 4.015 7 C -0.026 4.026 8 C -0.103 4.103 9 H 0.103 0.897 10 C 0.521 3.479 11 O -0.554 6.554 12 N -0.597 5.597 13 C 0.115 3.885 14 C -0.132 4.132 15 C 0.204 3.796 16 C -0.150 4.150 17 N -0.742 5.742 18 C -0.237 4.237 19 H 0.092 0.908 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.292 1.292 26 C -0.134 4.134 27 C 0.110 3.890 28 C -0.109 4.109 29 C -0.031 4.031 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.320 10.984 5.409 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.077 5.077 3 N -0.078 5.078 4 N -0.125 5.125 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.066 4.066 8 C -0.125 4.125 9 H 0.121 0.879 10 C 0.309 3.691 11 O -0.433 6.433 12 N -0.329 5.329 13 C -0.008 4.008 14 C -0.171 4.171 15 C 0.113 3.887 16 C -0.209 4.209 17 N -0.386 5.386 18 C -0.367 4.367 19 H 0.110 0.890 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.708 3.292 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.219 1.219 26 C -0.174 4.174 27 C -0.012 4.012 28 C -0.148 4.148 29 C -0.070 4.070 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.107 0.893 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.587 12.436 5.639 22.266 hybrid contribution 0.050 -1.729 1.020 2.008 sum -17.537 10.708 6.659 21.600 Atomic orbital electron populations 1.22277 0.72808 1.05931 1.05115 1.46808 1.09146 1.04616 1.47133 1.78576 0.96163 1.11266 1.21793 1.74802 1.09526 1.11999 1.16209 1.21729 0.95040 0.91311 1.07688 1.21798 0.91275 0.92170 1.09697 1.19956 0.97531 0.84800 1.04269 1.21347 0.96366 0.91864 1.02885 0.87862 1.20278 0.80859 0.87500 0.80500 1.90649 1.33278 1.82352 1.37046 1.48123 1.40360 1.06392 1.37991 1.21552 1.02087 0.79553 0.97581 1.22132 0.99006 1.00409 0.95550 1.19479 0.85508 0.91765 0.91921 1.22194 0.99717 1.00251 0.98788 1.42895 1.02731 1.73977 1.19015 1.18951 0.83664 1.33776 1.00326 0.89010 1.24628 0.95484 1.01141 0.97605 1.69680 0.97976 1.52897 1.37482 0.86676 0.77026 0.79521 0.85993 1.21141 1.20434 1.21891 1.22281 1.00816 0.97424 0.96886 1.21878 0.93220 0.98386 0.87748 1.21606 0.96787 0.96317 1.00070 1.19973 0.92483 0.91004 1.03569 0.88955 0.87960 0.88260 0.89924 0.88161 0.89603 0.91330 0.91457 0.90824 0.93176 0.94393 0.91964 0.80602 0.93072 0.89948 0.93099 0.90723 0.89144 0.90623 0.89411 0.89274 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.27 59.85 0.67 1.07 16 2 N -0.29 -2.92 3.73 -64.00 -0.24 -3.16 16 3 N -0.10 -1.33 13.19 60.35 0.80 -0.54 16 4 N -0.26 -3.76 12.40 33.17 0.41 -3.35 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.16 6.76 -82.50 -0.56 -0.72 16 7 C -0.03 -0.24 4.96 -27.74 -0.14 -0.38 16 8 C -0.10 -1.05 1.67 -91.49 -0.15 -1.21 16 9 H 0.10 0.98 6.19 -51.93 -0.32 0.65 16 10 C 0.52 6.83 6.81 -10.98 -0.07 6.75 16 11 O -0.55 -8.69 15.26 5.56 0.08 -8.61 16 12 N -0.60 -8.14 2.97 -172.77 -0.51 -8.65 16 13 C 0.11 1.64 6.17 -3.71 -0.02 1.62 16 14 C -0.13 -1.86 4.96 -26.61 -0.13 -1.99 16 15 C 0.20 3.33 0.74 -131.78 -0.10 3.23 16 16 C -0.15 -2.43 8.44 37.16 0.31 -2.12 16 17 N -0.74 -15.09 3.94 -47.19 -0.19 -15.28 16 18 C -0.24 -5.87 9.16 -15.06 -0.14 -6.01 16 19 H 0.09 2.45 6.93 -52.49 -0.36 2.09 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -27.54 13.97 55.49 0.78 -26.77 16 22 Si 0.88 20.74 27.74 -169.99 -4.71 16.03 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C -0.13 -1.99 4.71 -26.61 -0.13 -2.11 16 27 C 0.11 1.51 5.72 -3.71 -0.02 1.49 16 28 C -0.11 -1.08 5.14 -26.44 -0.14 -1.22 16 29 C -0.03 -0.31 6.30 -27.70 -0.17 -0.48 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.31 7.71 -51.93 -0.40 -0.09 16 33 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 34 H 0.10 1.01 7.52 -51.93 -0.39 0.62 16 35 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 36 H 0.07 1.06 6.94 -51.93 -0.36 0.70 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.06 1.13 7.27 -51.93 -0.38 0.75 16 42 H 0.36 7.44 4.33 -40.82 -0.18 7.26 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.84 5.42 -51.93 -0.28 0.55 16 47 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 48 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.09 0.88 7.80 -51.93 -0.40 0.48 16 50 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -32.88 389.09 -7.22 -40.10 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.03 Total: 7.13 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.47 Total: -2.77 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 1.04 Total: -57.74 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.88 -7.22 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733866326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.516 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds