Wall clock time and date at job start Wed Apr 1 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29102 * 126.00832 * 2 1 4 4 N 1.29020 * 110.26129 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63280 * 359.97415 * 4 3 2 6 6 C 1.34395 * 126.00226 * 180.02562 * 2 1 3 7 7 C 1.50533 * 129.26013 * 0.11817 * 6 2 1 8 8 C 1.53432 * 108.32629 * 163.56969 * 7 6 2 9 9 H 1.09001 * 109.45823 * 289.70939 * 8 7 6 10 10 C 1.50703 * 109.45802 * 169.74275 * 8 7 6 11 11 O 1.21275 * 120.00044 * 337.88952 * 10 8 7 12 12 N 1.34780 * 119.99701 * 157.89047 * 10 8 7 13 13 C 1.46930 * 120.62355 * 175.49796 * 12 10 8 14 14 C 1.53198 * 108.76801 * 126.37236 * 13 12 10 15 15 C 1.53033 * 109.31564 * 54.63394 * 14 13 12 16 16 C 1.53001 * 109.46324 * 178.62065 * 15 14 13 17 17 N 1.46509 * 109.46025 * 58.65449 * 15 14 13 18 18 C 1.36939 * 119.99856 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00063 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99813 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00193 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99771 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47151 * 269.99903 * 22 20 18 24 24 H 1.48498 * 109.47220 * 30.00650 * 22 20 18 25 25 H 1.48500 * 109.46749 * 150.00219 * 22 20 18 26 26 C 1.53038 * 109.54067 * 298.63535 * 15 14 13 27 27 C 1.46924 * 120.63301 * 355.48000 * 12 10 8 28 28 C 1.53107 * 109.54130 * 49.72548 * 8 7 6 29 29 C 1.50600 * 129.16205 * 180.21837 * 5 4 3 30 30 H 1.09002 * 109.47527 * 269.98021 * 1 2 3 31 31 H 1.09004 * 109.47172 * 29.98004 * 1 2 3 32 32 H 1.09002 * 109.47156 * 149.97926 * 1 2 3 33 33 H 1.08998 * 109.68805 * 43.86765 * 7 6 2 34 34 H 1.08999 * 109.73051 * 283.30166 * 7 6 2 35 35 H 1.08995 * 109.58929 * 6.58467 * 13 12 10 36 36 H 1.08996 * 109.70491 * 246.22041 * 13 12 10 37 37 H 1.08996 * 109.49766 * 294.67647 * 14 13 12 38 38 H 1.09007 * 109.51971 * 174.59945 * 14 13 12 39 39 H 1.08994 * 109.47246 * 300.03339 * 16 15 14 40 40 H 1.09008 * 109.46362 * 60.03124 * 16 15 14 41 41 H 1.08996 * 109.47460 * 180.02562 * 16 15 14 42 42 H 0.96993 * 119.99729 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00124 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.50134 * 181.31781 * 26 15 14 45 45 H 1.09000 * 109.49332 * 301.41285 * 26 15 14 46 46 H 1.08992 * 109.58860 * 353.41584 * 27 12 10 47 47 H 1.09001 * 109.58590 * 113.70251 * 27 12 10 48 48 H 1.09005 * 109.45336 * 49.96078 * 28 8 7 49 49 H 1.08993 * 109.45715 * 169.89079 * 28 8 7 50 50 H 1.09004 * 109.68901 * 283.09013 * 29 5 4 51 51 H 1.08996 * 109.69131 * 43.66782 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2550 -1.0872 -0.0005 7 6 1.8720 -2.5431 -0.0035 8 6 3.1011 -3.3643 -0.4148 9 1 3.3137 -3.1959 -1.4706 10 6 2.8263 -4.8282 -0.1855 11 8 1.9698 -5.1682 0.6029 12 7 3.5326 -5.7596 -0.8565 13 6 3.3456 -7.1890 -0.5726 14 6 3.0328 -7.9154 -1.8847 15 6 4.1342 -7.6158 -2.9041 16 6 3.8430 -8.3672 -4.2047 17 7 5.4266 -8.0505 -2.3682 18 6 6.5662 -7.8826 -3.1087 19 1 6.5122 -7.4302 -4.0879 20 6 7.7907 -8.2950 -2.6013 21 7 8.8861 -8.1332 -3.3127 22 14 7.8839 -9.0782 -0.9079 23 1 8.0961 -8.0226 0.1148 24 1 6.6149 -9.7951 -0.6236 25 1 9.0149 -10.0397 -0.8689 26 6 4.1779 -6.1117 -3.1832 27 6 4.5036 -5.3649 -1.8860 28 6 4.3081 -2.9345 0.4233 29 6 4.7468 -1.5243 0.0068 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.0643 -2.7088 -0.7164 34 1 1.5485 -2.8405 0.9939 35 1 2.5165 -7.3180 0.1231 36 1 4.2562 -7.5992 -0.1361 37 1 2.0745 -7.5699 -2.2723 38 1 2.9864 -8.9894 -1.7043 39 1 3.8125 -9.4385 -4.0064 40 1 2.8815 -8.0439 -4.6036 41 1 4.6276 -8.1543 -4.9308 42 1 5.4751 -8.4565 -1.4887 43 1 9.7417 -8.4210 -2.9579 44 1 4.9467 -5.9019 -3.9268 45 1 3.2088 -5.7832 -3.5587 46 1 4.4386 -4.2904 -2.0568 47 1 5.5103 -5.6223 -1.5567 48 1 4.0355 -2.9338 1.4787 49 1 5.1295 -3.6324 0.2616 50 1 5.1844 -1.5547 -0.9910 51 1 5.4792 -1.1428 0.7182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733866326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:53 Heat of formation + Delta-G solvation = 53.099854 kcal Electronic energy + Delta-G solvation = -32186.896042 eV Core-core repulsion = 28122.644596 eV Total energy + Delta-G solvation = -4064.251446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.44062 -41.54728 -39.54499 -37.61505 -36.07444 -35.87715 -34.18151 -32.42678 -31.58538 -31.51626 -31.19070 -29.12675 -28.69577 -26.05013 -25.39126 -24.51230 -24.24186 -23.44523 -22.38728 -21.32016 -20.27494 -19.72721 -19.36045 -18.42766 -18.00347 -17.62279 -16.81643 -16.48750 -16.26632 -15.95500 -15.54665 -15.26960 -15.01516 -14.96198 -14.84234 -14.78659 -14.60731 -14.33640 -14.19772 -14.09277 -13.65170 -13.62687 -13.47741 -13.13171 -12.93937 -12.91429 -12.69809 -12.60942 -12.56196 -12.52257 -12.17458 -12.16047 -11.94993 -11.94179 -11.70193 -11.59575 -11.56420 -11.09103 -10.95128 -10.87788 -10.61624 -9.87434 -9.61040 -9.15215 -7.90281 -5.20946 0.53373 1.42218 1.42647 1.43093 1.45852 1.50605 1.61437 2.03815 2.56211 3.10470 3.35225 3.42281 3.60256 3.64113 3.72260 3.78103 3.82302 3.95405 3.99211 4.11251 4.18001 4.23054 4.26151 4.32111 4.41188 4.45260 4.49542 4.57027 4.62716 4.68206 4.73060 4.82130 4.89141 4.90468 4.91252 4.99388 5.02255 5.04355 5.07440 5.14728 5.16964 5.21111 5.29192 5.34678 5.39217 5.59631 5.62332 5.70554 5.94174 6.34430 6.49717 7.16563 7.21042 7.44406 7.98269 8.15577 9.31417 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002973 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.689671 B = 9415.488533 C =10100.686746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.276 5.276 3 N -0.127 5.127 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.011 4.011 7 C -0.017 4.017 8 C -0.098 4.098 9 H 0.117 0.883 10 C 0.526 3.474 11 O -0.577 6.577 12 N -0.597 5.597 13 C 0.114 3.886 14 C -0.122 4.122 15 C 0.193 3.807 16 C -0.146 4.146 17 N -0.743 5.743 18 C -0.195 4.195 19 H 0.066 0.934 20 C -0.063 4.063 21 N -0.987 5.987 22 Si 0.936 3.064 23 H -0.283 1.283 24 H -0.255 1.255 25 H -0.309 1.309 26 C -0.130 4.130 27 C 0.116 3.884 28 C -0.103 4.103 29 C -0.027 4.027 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.361 0.639 43 H 0.252 0.748 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.534 11.042 6.064 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.105 5.105 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.056 4.056 8 C -0.119 4.119 9 H 0.135 0.865 10 C 0.315 3.685 11 O -0.457 6.457 12 N -0.328 5.328 13 C -0.009 4.009 14 C -0.161 4.161 15 C 0.104 3.896 16 C -0.205 4.205 17 N -0.386 5.386 18 C -0.326 4.326 19 H 0.084 0.916 20 C -0.254 4.254 21 N -0.639 5.639 22 Si 0.766 3.234 23 H -0.210 1.210 24 H -0.180 1.180 25 H -0.237 1.237 26 C -0.170 4.170 27 C -0.006 4.006 28 C -0.142 4.142 29 C -0.066 4.066 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.195 0.805 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.894 12.521 6.305 25.161 hybrid contribution 0.885 -1.714 0.763 2.074 sum -20.010 10.806 7.069 23.814 Atomic orbital electron populations 1.22766 0.69969 1.07804 1.06816 1.47205 1.10711 1.03780 1.45177 1.78488 0.96315 1.12469 1.23216 1.74748 1.10445 1.13373 1.17769 1.22112 0.96422 0.90962 1.07913 1.21959 0.90903 0.92792 1.08976 1.19928 0.97565 0.83460 1.04682 1.21340 0.96890 0.89968 1.03717 0.86514 1.20631 0.80047 0.88264 0.79595 1.90647 1.34301 1.82884 1.37883 1.48119 1.40333 1.06341 1.38036 1.21510 1.01579 0.80043 0.97758 1.22052 0.98607 1.00910 0.94482 1.19820 0.84333 0.92712 0.92717 1.22132 1.00446 0.99969 0.97936 1.42940 1.03129 1.73869 1.18687 1.18872 0.84799 1.29977 0.98975 0.91580 1.25258 0.95446 1.03493 1.01165 1.69849 0.98443 1.56003 1.39592 0.85696 0.77211 0.78462 0.82080 1.20957 1.17951 1.23655 1.22205 1.01596 0.96261 0.96935 1.21758 0.91736 0.99997 0.87090 1.21540 0.96644 0.96143 0.99840 1.19989 0.91990 0.90558 1.04103 0.87298 0.86760 0.85838 0.87804 0.88490 0.89144 0.92742 0.89355 0.90253 0.93699 0.91196 0.94741 0.80513 0.93927 0.92204 0.90288 0.87821 0.92146 0.90998 0.89571 0.88511 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.27 127.77 1.44 1.90 16 2 N -0.28 -5.10 3.73 -356.40 -1.33 -6.43 16 3 N -0.13 -3.29 13.19 37.02 0.49 -2.80 16 4 N -0.30 -8.54 12.40 -48.98 -0.61 -9.14 16 5 C -0.03 -0.76 7.11 41.75 0.30 -0.46 16 6 C -0.01 -0.21 6.76 41.50 0.28 0.07 16 7 C -0.02 -0.26 4.96 29.94 0.15 -0.11 16 8 C -0.10 -1.70 1.67 -11.36 -0.02 -1.72 16 9 H 0.12 1.75 6.19 -2.39 -0.01 1.74 16 10 C 0.53 12.15 6.81 87.66 0.60 12.74 16 11 O -0.58 -16.36 15.26 -3.01 -0.05 -16.40 16 12 N -0.60 -14.58 2.97 -818.91 -2.43 -17.01 16 13 C 0.11 2.95 6.17 86.36 0.53 3.48 16 14 C -0.12 -3.01 4.96 30.67 0.15 -2.86 16 15 C 0.19 5.89 0.74 3.63 0.00 5.89 16 16 C -0.15 -4.43 8.44 71.98 0.61 -3.82 16 17 N -0.74 -29.36 3.94 -303.22 -1.20 -30.56 16 18 C -0.19 -9.73 9.16 84.03 0.77 -8.96 16 19 H 0.07 3.63 6.93 -2.91 -0.02 3.61 16 20 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 21 N -0.99 -60.31 13.97 21.65 0.30 -60.01 16 22 Si 0.94 43.25 27.74 68.60 1.90 45.15 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 25 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 26 C -0.13 -3.55 4.71 30.67 0.14 -3.41 16 27 C 0.12 2.94 5.72 86.36 0.49 3.43 16 28 C -0.10 -1.84 5.14 30.78 0.16 -1.68 16 29 C -0.03 -0.51 6.30 29.97 0.19 -0.32 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.12 0.29 7.71 -2.39 -0.02 0.27 16 33 H 0.10 1.20 7.87 -2.39 -0.02 1.18 16 34 H 0.10 1.65 7.52 -2.39 -0.02 1.63 16 35 H 0.09 2.30 7.00 -2.39 -0.02 2.28 16 36 H 0.05 1.57 6.94 -2.39 -0.02 1.55 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.03 1.22 7.27 -2.39 -0.02 1.20 16 42 H 0.36 14.28 4.33 -92.71 -0.40 13.88 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16 44 H 0.06 1.93 7.31 -2.39 -0.02 1.91 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.10 2.00 5.42 -2.39 -0.01 1.99 16 47 H 0.06 1.93 7.74 -2.39 -0.02 1.91 16 48 H 0.07 1.34 8.12 -2.38 -0.02 1.32 16 49 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 50 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 51 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.31 389.09 3.83 -69.48 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.49 Total: 26.51 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.26 Total: 1.21 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -4.77 Total: -125.95 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.15 kcal Total: -73.31 3.83 -69.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733866326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.582 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds