Wall clock time and date at job start Wed Apr 1 2020 04:37:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 N 1.29102 * 126.00832 * 2 1
4 4 N 1.29020 * 110.26129 * 179.97438 * 3 2 1
5 5 C 1.32911 * 108.63280 * 359.97415 * 4 3 2
6 6 C 1.34395 * 126.00226 * 180.02562 * 2 1 3
7 7 C 1.50533 * 129.26013 * 0.11817 * 6 2 1
8 8 C 1.53432 * 108.32629 * 163.56969 * 7 6 2
9 9 H 1.09001 * 109.45823 * 289.70939 * 8 7 6
10 10 C 1.50703 * 109.45802 * 169.74275 * 8 7 6
11 11 O 1.21275 * 120.00044 * 337.88952 * 10 8 7
12 12 N 1.34780 * 119.99701 * 157.89047 * 10 8 7
13 13 C 1.46930 * 120.62355 * 175.49796 * 12 10 8
14 14 C 1.53198 * 108.76801 * 126.37236 * 13 12 10
15 15 C 1.53033 * 109.31564 * 54.63394 * 14 13 12
16 16 C 1.53001 * 109.46324 * 178.62065 * 15 14 13
17 17 N 1.46509 * 109.46025 * 58.65449 * 15 14 13
18 18 C 1.36939 * 119.99856 * 180.02562 * 17 15 14
19 19 H 1.07995 * 120.00063 * 359.97438 * 18 17 15
20 20 C 1.38813 * 119.99813 * 180.02562 * 18 17 15
21 21 N 1.31616 * 120.00193 * 180.02562 * 20 18 17
22 22 Si 1.86805 * 119.99771 * 359.97438 * 20 18 17
23 23 H 1.48503 * 109.47151 * 269.99903 * 22 20 18
24 24 H 1.48498 * 109.47220 * 30.00650 * 22 20 18
25 25 H 1.48500 * 109.46749 * 150.00219 * 22 20 18
26 26 C 1.53038 * 109.54067 * 298.63535 * 15 14 13
27 27 C 1.46924 * 120.63301 * 355.48000 * 12 10 8
28 28 C 1.53107 * 109.54130 * 49.72548 * 8 7 6
29 29 C 1.50600 * 129.16205 * 180.21837 * 5 4 3
30 30 H 1.09002 * 109.47527 * 269.98021 * 1 2 3
31 31 H 1.09004 * 109.47172 * 29.98004 * 1 2 3
32 32 H 1.09002 * 109.47156 * 149.97926 * 1 2 3
33 33 H 1.08998 * 109.68805 * 43.86765 * 7 6 2
34 34 H 1.08999 * 109.73051 * 283.30166 * 7 6 2
35 35 H 1.08995 * 109.58929 * 6.58467 * 13 12 10
36 36 H 1.08996 * 109.70491 * 246.22041 * 13 12 10
37 37 H 1.08996 * 109.49766 * 294.67647 * 14 13 12
38 38 H 1.09007 * 109.51971 * 174.59945 * 14 13 12
39 39 H 1.08994 * 109.47246 * 300.03339 * 16 15 14
40 40 H 1.09008 * 109.46362 * 60.03124 * 16 15 14
41 41 H 1.08996 * 109.47460 * 180.02562 * 16 15 14
42 42 H 0.96993 * 119.99729 * 359.97438 * 17 15 14
43 43 H 0.96995 * 120.00124 * 179.97438 * 21 20 18
44 44 H 1.08995 * 109.50134 * 181.31781 * 26 15 14
45 45 H 1.09000 * 109.49332 * 301.41285 * 26 15 14
46 46 H 1.08992 * 109.58860 * 353.41584 * 27 12 10
47 47 H 1.09001 * 109.58590 * 113.70251 * 27 12 10
48 48 H 1.09005 * 109.45336 * 49.96078 * 28 8 7
49 49 H 1.08993 * 109.45715 * 169.89079 * 28 8 7
50 50 H 1.09004 * 109.68901 * 283.09013 * 29 5 4
51 51 H 1.08996 * 109.69131 * 43.66782 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2240 1.0443 0.0000
4 7 3.4658 0.6942 0.0005
5 6 3.5327 -0.6332 0.0015
6 6 2.2550 -1.0872 -0.0005
7 6 1.8720 -2.5431 -0.0035
8 6 3.1011 -3.3643 -0.4148
9 1 3.3137 -3.1959 -1.4706
10 6 2.8263 -4.8282 -0.1855
11 8 1.9698 -5.1682 0.6029
12 7 3.5326 -5.7596 -0.8565
13 6 3.3456 -7.1890 -0.5726
14 6 3.0328 -7.9154 -1.8847
15 6 4.1342 -7.6158 -2.9041
16 6 3.8430 -8.3672 -4.2047
17 7 5.4266 -8.0505 -2.3682
18 6 6.5662 -7.8826 -3.1087
19 1 6.5122 -7.4302 -4.0879
20 6 7.7907 -8.2950 -2.6013
21 7 8.8861 -8.1332 -3.3127
22 14 7.8839 -9.0782 -0.9079
23 1 8.0961 -8.0226 0.1148
24 1 6.6149 -9.7951 -0.6236
25 1 9.0149 -10.0397 -0.8689
26 6 4.1779 -6.1117 -3.1832
27 6 4.5036 -5.3649 -1.8860
28 6 4.3081 -2.9345 0.4233
29 6 4.7468 -1.5243 0.0068
30 1 -0.3634 -0.0004 1.0277
31 1 -0.3634 0.8902 -0.5135
32 1 -0.3633 -0.8898 -0.5142
33 1 1.0643 -2.7088 -0.7164
34 1 1.5485 -2.8405 0.9939
35 1 2.5165 -7.3180 0.1231
36 1 4.2562 -7.5992 -0.1361
37 1 2.0745 -7.5699 -2.2723
38 1 2.9864 -8.9894 -1.7043
39 1 3.8125 -9.4385 -4.0064
40 1 2.8815 -8.0439 -4.6036
41 1 4.6276 -8.1543 -4.9308
42 1 5.4751 -8.4565 -1.4887
43 1 9.7417 -8.4210 -2.9579
44 1 4.9467 -5.9019 -3.9268
45 1 3.2088 -5.7832 -3.5587
46 1 4.4386 -4.2904 -2.0568
47 1 5.5103 -5.6223 -1.5567
48 1 4.0355 -2.9338 1.4787
49 1 5.1295 -3.6324 0.2616
50 1 5.1844 -1.5547 -0.9910
51 1 5.4792 -1.1428 0.7182
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733866326.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:53
Heat of formation + Delta-G solvation = 53.099854 kcal
Electronic energy + Delta-G solvation = -32186.896042 eV
Core-core repulsion = 28122.644596 eV
Total energy + Delta-G solvation = -4064.251446 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-44.44062 -41.54728 -39.54499 -37.61505 -36.07444 -35.87715 -34.18151 -32.42678
-31.58538 -31.51626 -31.19070 -29.12675 -28.69577 -26.05013 -25.39126 -24.51230
-24.24186 -23.44523 -22.38728 -21.32016 -20.27494 -19.72721 -19.36045 -18.42766
-18.00347 -17.62279 -16.81643 -16.48750 -16.26632 -15.95500 -15.54665 -15.26960
-15.01516 -14.96198 -14.84234 -14.78659 -14.60731 -14.33640 -14.19772 -14.09277
-13.65170 -13.62687 -13.47741 -13.13171 -12.93937 -12.91429 -12.69809 -12.60942
-12.56196 -12.52257 -12.17458 -12.16047 -11.94993 -11.94179 -11.70193 -11.59575
-11.56420 -11.09103 -10.95128 -10.87788 -10.61624 -9.87434 -9.61040 -9.15215
-7.90281 -5.20946 0.53373 1.42218 1.42647 1.43093 1.45852 1.50605
1.61437 2.03815 2.56211 3.10470 3.35225 3.42281 3.60256 3.64113
3.72260 3.78103 3.82302 3.95405 3.99211 4.11251 4.18001 4.23054
4.26151 4.32111 4.41188 4.45260 4.49542 4.57027 4.62716 4.68206
4.73060 4.82130 4.89141 4.90468 4.91252 4.99388 5.02255 5.04355
5.07440 5.14728 5.16964 5.21111 5.29192 5.34678 5.39217 5.59631
5.62332 5.70554 5.94174 6.34430 6.49717 7.16563 7.21042 7.44406
7.98269 8.15577 9.31417
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015241 B = 0.002973 C = 0.002771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1836.689671 B = 9415.488533 C =10100.686746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.066 3.934
2 N -0.276 5.276
3 N -0.127 5.127
4 N -0.300 5.300
5 C -0.033 4.033
6 C -0.011 4.011
7 C -0.017 4.017
8 C -0.098 4.098
9 H 0.117 0.883
10 C 0.526 3.474
11 O -0.577 6.577
12 N -0.597 5.597
13 C 0.114 3.886
14 C -0.122 4.122
15 C 0.193 3.807
16 C -0.146 4.146
17 N -0.743 5.743
18 C -0.195 4.195
19 H 0.066 0.934
20 C -0.063 4.063
21 N -0.987 5.987
22 Si 0.936 3.064
23 H -0.283 1.283
24 H -0.255 1.255
25 H -0.309 1.309
26 C -0.130 4.130
27 C 0.116 3.884
28 C -0.103 4.103
29 C -0.027 4.027
30 H 0.109 0.891
31 H 0.114 0.886
32 H 0.123 0.877
33 H 0.104 0.896
34 H 0.097 0.903
35 H 0.090 0.910
36 H 0.054 0.946
37 H 0.088 0.912
38 H 0.079 0.921
39 H 0.044 0.956
40 H 0.069 0.931
41 H 0.033 0.967
42 H 0.361 0.639
43 H 0.252 0.748
44 H 0.059 0.941
45 H 0.079 0.921
46 H 0.104 0.896
47 H 0.060 0.940
48 H 0.071 0.929
49 H 0.086 0.914
50 H 0.097 0.903
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.534 11.042 6.064 24.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.069 5.069
3 N -0.105 5.105
4 N -0.163 5.163
5 C -0.174 4.174
6 C -0.146 4.146
7 C -0.056 4.056
8 C -0.119 4.119
9 H 0.135 0.865
10 C 0.315 3.685
11 O -0.457 6.457
12 N -0.328 5.328
13 C -0.009 4.009
14 C -0.161 4.161
15 C 0.104 3.896
16 C -0.205 4.205
17 N -0.386 5.386
18 C -0.326 4.326
19 H 0.084 0.916
20 C -0.254 4.254
21 N -0.639 5.639
22 Si 0.766 3.234
23 H -0.210 1.210
24 H -0.180 1.180
25 H -0.237 1.237
26 C -0.170 4.170
27 C -0.006 4.006
28 C -0.142 4.142
29 C -0.066 4.066
30 H 0.127 0.873
31 H 0.132 0.868
32 H 0.142 0.858
33 H 0.122 0.878
34 H 0.115 0.885
35 H 0.109 0.891
36 H 0.073 0.927
37 H 0.106 0.894
38 H 0.097 0.903
39 H 0.063 0.937
40 H 0.088 0.912
41 H 0.053 0.947
42 H 0.195 0.805
43 H 0.061 0.939
44 H 0.078 0.922
45 H 0.097 0.903
46 H 0.122 0.878
47 H 0.079 0.921
48 H 0.090 0.910
49 H 0.104 0.896
50 H 0.115 0.885
51 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -20.894 12.521 6.305 25.161
hybrid contribution 0.885 -1.714 0.763 2.074
sum -20.010 10.806 7.069 23.814
Atomic orbital electron populations
1.22766 0.69969 1.07804 1.06816 1.47205 1.10711 1.03780 1.45177
1.78488 0.96315 1.12469 1.23216 1.74748 1.10445 1.13373 1.17769
1.22112 0.96422 0.90962 1.07913 1.21959 0.90903 0.92792 1.08976
1.19928 0.97565 0.83460 1.04682 1.21340 0.96890 0.89968 1.03717
0.86514 1.20631 0.80047 0.88264 0.79595 1.90647 1.34301 1.82884
1.37883 1.48119 1.40333 1.06341 1.38036 1.21510 1.01579 0.80043
0.97758 1.22052 0.98607 1.00910 0.94482 1.19820 0.84333 0.92712
0.92717 1.22132 1.00446 0.99969 0.97936 1.42940 1.03129 1.73869
1.18687 1.18872 0.84799 1.29977 0.98975 0.91580 1.25258 0.95446
1.03493 1.01165 1.69849 0.98443 1.56003 1.39592 0.85696 0.77211
0.78462 0.82080 1.20957 1.17951 1.23655 1.22205 1.01596 0.96261
0.96935 1.21758 0.91736 0.99997 0.87090 1.21540 0.96644 0.96143
0.99840 1.19989 0.91990 0.90558 1.04103 0.87298 0.86760 0.85838
0.87804 0.88490 0.89144 0.92742 0.89355 0.90253 0.93699 0.91196
0.94741 0.80513 0.93927 0.92204 0.90288 0.87821 0.92146 0.90998
0.89571 0.88511 0.88982
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.46 11.27 127.77 1.44 1.90 16
2 N -0.28 -5.10 3.73 -356.40 -1.33 -6.43 16
3 N -0.13 -3.29 13.19 37.02 0.49 -2.80 16
4 N -0.30 -8.54 12.40 -48.98 -0.61 -9.14 16
5 C -0.03 -0.76 7.11 41.75 0.30 -0.46 16
6 C -0.01 -0.21 6.76 41.50 0.28 0.07 16
7 C -0.02 -0.26 4.96 29.94 0.15 -0.11 16
8 C -0.10 -1.70 1.67 -11.36 -0.02 -1.72 16
9 H 0.12 1.75 6.19 -2.39 -0.01 1.74 16
10 C 0.53 12.15 6.81 87.66 0.60 12.74 16
11 O -0.58 -16.36 15.26 -3.01 -0.05 -16.40 16
12 N -0.60 -14.58 2.97 -818.91 -2.43 -17.01 16
13 C 0.11 2.95 6.17 86.36 0.53 3.48 16
14 C -0.12 -3.01 4.96 30.67 0.15 -2.86 16
15 C 0.19 5.89 0.74 3.63 0.00 5.89 16
16 C -0.15 -4.43 8.44 71.98 0.61 -3.82 16
17 N -0.74 -29.36 3.94 -303.22 -1.20 -30.56 16
18 C -0.19 -9.73 9.16 84.03 0.77 -8.96 16
19 H 0.07 3.63 6.93 -2.91 -0.02 3.61 16
20 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16
21 N -0.99 -60.31 13.97 21.65 0.30 -60.01 16
22 Si 0.94 43.25 27.74 68.60 1.90 45.15 16
23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
24 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16
25 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16
26 C -0.13 -3.55 4.71 30.67 0.14 -3.41 16
27 C 0.12 2.94 5.72 86.36 0.49 3.43 16
28 C -0.10 -1.84 5.14 30.78 0.16 -1.68 16
29 C -0.03 -0.51 6.30 29.97 0.19 -0.32 16
30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16
31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16
32 H 0.12 0.29 7.71 -2.39 -0.02 0.27 16
33 H 0.10 1.20 7.87 -2.39 -0.02 1.18 16
34 H 0.10 1.65 7.52 -2.39 -0.02 1.63 16
35 H 0.09 2.30 7.00 -2.39 -0.02 2.28 16
36 H 0.05 1.57 6.94 -2.39 -0.02 1.55 16
37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16
39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16
41 H 0.03 1.22 7.27 -2.39 -0.02 1.20 16
42 H 0.36 14.28 4.33 -92.71 -0.40 13.88 16
43 H 0.25 14.99 8.31 -92.71 -0.77 14.21 16
44 H 0.06 1.93 7.31 -2.39 -0.02 1.91 16
45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
46 H 0.10 2.00 5.42 -2.39 -0.01 1.99 16
47 H 0.06 1.93 7.74 -2.39 -0.02 1.91 16
48 H 0.07 1.34 8.12 -2.38 -0.02 1.32 16
49 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16
50 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16
51 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
Total: -1.00 -73.31 389.09 3.83 -69.48
By element:
Atomic # 1 Polarization: 26.02 SS G_CDS: 0.49 Total: 26.51 kcal
Atomic # 6 Polarization: -5.05 SS G_CDS: 6.26 Total: 1.21 kcal
Atomic # 7 Polarization: -121.17 SS G_CDS: -4.77 Total: -125.95 kcal
Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.40 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.15 kcal
Total: -73.31 3.83 -69.48 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733866326.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.582 kcal
(2) G-P(sol) polarization free energy of solvation -73.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds