Wall clock time and date at job start Wed Apr 1 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29112 * 126.00434 * 2 1 4 4 N 1.29019 * 110.25840 * 180.09647 * 3 2 1 5 5 C 1.32904 * 108.63592 * 0.02907 * 4 3 2 6 6 C 1.34388 * 126.01243 * 180.02562 * 2 1 3 7 7 C 1.50541 * 129.25108 * 359.69573 * 6 2 1 8 8 C 1.53442 * 108.32247 * 196.56980 * 7 6 2 9 9 H 1.08995 * 109.44947 * 70.29519 * 8 7 6 10 10 C 1.50703 * 109.45567 * 190.25736 * 8 7 6 11 11 O 1.21279 * 120.00457 * 95.43662 * 10 8 7 12 12 N 1.34780 * 119.99637 * 275.43791 * 10 8 7 13 13 C 1.46926 * 120.63111 * 355.03663 * 12 10 8 14 14 C 1.53626 * 108.53925 * 126.36959 * 13 12 10 15 15 C 1.53043 * 109.24329 * 54.85768 * 14 13 12 16 16 C 1.52998 * 109.45835 * 178.48592 * 15 14 13 17 17 N 1.46503 * 109.45885 * 58.53164 * 15 14 13 18 18 C 1.36930 * 120.00226 * 59.93139 * 17 15 14 19 19 H 1.08001 * 120.00282 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47348 * 89.99930 * 22 20 18 24 24 H 1.48498 * 109.47053 * 210.00316 * 22 20 18 25 25 H 1.48508 * 109.46894 * 329.99773 * 22 20 18 26 26 C 1.53035 * 109.53641 * 298.50964 * 15 14 13 27 27 C 1.46928 * 120.62847 * 175.31894 * 12 10 8 28 28 C 1.53106 * 109.55139 * 310.27579 * 8 7 6 29 29 C 1.50600 * 129.16585 * 179.89531 * 5 4 3 30 30 H 1.09005 * 109.47172 * 89.97856 * 1 2 3 31 31 H 1.08998 * 109.47355 * 209.97100 * 1 2 3 32 32 H 1.08996 * 109.47686 * 329.97650 * 1 2 3 33 33 H 1.09001 * 109.69461 * 76.85946 * 7 6 2 34 34 H 1.08999 * 109.69240 * 316.27237 * 7 6 2 35 35 H 1.09002 * 109.58559 * 246.20055 * 13 12 10 36 36 H 1.08998 * 109.58870 * 6.62744 * 13 12 10 37 37 H 1.09001 * 109.63849 * 294.86146 * 14 13 12 38 38 H 1.09000 * 109.45594 * 174.73861 * 14 13 12 39 39 H 1.09003 * 109.47067 * 180.02562 * 16 15 14 40 40 H 1.08997 * 109.47672 * 300.06685 * 16 15 14 41 41 H 1.08999 * 109.46957 * 60.07277 * 16 15 14 42 42 H 0.97002 * 119.99344 * 239.92896 * 17 15 14 43 43 H 0.97000 * 119.99639 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49749 * 301.41471 * 26 15 14 45 45 H 1.09000 * 109.52175 * 181.33717 * 26 15 14 46 46 H 1.08999 * 109.58648 * 353.37256 * 27 12 10 47 47 H 1.08993 * 109.58677 * 113.79743 * 27 12 10 48 48 H 1.08993 * 109.45503 * 190.10527 * 28 8 7 49 49 H 1.09000 * 109.45466 * 310.04481 * 28 8 7 50 50 H 1.09003 * 109.68974 * 76.76093 * 29 5 4 51 51 H 1.09002 * 109.71916 * 316.20187 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4657 0.6944 -0.0020 5 6 3.5327 -0.6330 -0.0041 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5429 0.0051 8 6 3.1015 -3.3635 0.4174 9 1 3.3141 -3.1932 1.4727 10 6 2.8267 -4.8278 0.1905 11 8 3.1859 -5.3599 -0.8384 12 7 2.1818 -5.5460 1.1311 13 6 1.8365 -4.9445 2.4264 14 6 0.3319 -5.1373 2.6689 15 6 -0.0108 -6.6246 2.5557 16 6 -1.5016 -6.8267 2.8338 17 7 0.7748 -7.3821 3.5332 18 6 0.6482 -7.1129 4.8698 19 1 -0.0304 -6.3419 5.2035 20 6 1.3922 -7.8312 5.7959 21 7 2.2188 -8.7712 5.3892 22 14 1.2190 -7.4645 7.6193 23 1 0.1450 -8.3130 8.1951 24 1 2.5025 -7.7561 8.3069 25 1 0.8721 -6.0325 7.8055 26 6 0.3166 -7.1192 1.1450 27 6 1.8161 -6.9472 0.8830 28 6 4.3084 -2.9351 -0.4217 29 6 4.7468 -1.5240 -0.0090 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.5488 -2.8415 -0.9921 34 1 1.0646 -2.7076 0.7183 35 1 2.4029 -5.4336 3.2189 36 1 2.0720 -3.8803 2.4094 37 1 -0.2340 -4.5760 1.9254 38 1 0.0762 -4.7800 3.6665 39 1 -1.7458 -7.8860 2.7537 40 1 -1.7350 -6.4745 3.8385 41 1 -2.0865 -6.2637 2.1064 42 1 1.3845 -8.0744 3.2334 43 1 2.7389 -9.2728 6.0363 44 1 -0.2491 -6.5392 0.4157 45 1 0.0504 -8.1726 1.0575 46 1 2.0380 -7.2049 -0.1526 47 1 2.3807 -7.5962 1.5522 48 1 5.1298 -3.6328 -0.2588 49 1 4.0356 -2.9360 -1.4770 50 1 5.1850 -1.5532 0.9886 51 1 5.4793 -1.1436 -0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733866327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:59 Heat of formation + Delta-G solvation = 70.260566 kcal Electronic energy + Delta-G solvation = -32352.069432 eV Core-core repulsion = 28288.562130 eV Total energy + Delta-G solvation = -4063.507302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.60057 -40.36424 -38.21300 -36.61249 -35.15251 -34.56604 -32.45862 -31.31244 -30.72496 -30.21160 -29.09785 -28.14855 -27.73250 -24.99752 -24.04867 -23.56376 -23.02792 -22.29926 -21.58527 -20.30035 -19.22588 -18.09232 -17.32916 -17.23918 -17.16441 -16.77852 -15.66939 -15.52330 -14.78864 -14.58864 -14.27035 -14.15003 -14.12394 -13.93969 -13.79182 -13.60246 -13.56283 -13.47415 -13.16614 -12.89503 -12.53054 -12.35345 -12.14354 -12.10675 -11.70085 -11.62252 -11.35778 -11.32202 -11.28576 -11.11323 -10.95508 -10.86587 -10.82932 -10.69162 -10.36487 -10.33586 -10.15774 -9.74871 -9.62319 -9.49070 -9.04078 -9.01266 -8.29180 -7.04570 -5.84861 -3.13722 1.34809 2.06838 2.36616 2.72008 3.17677 3.36299 3.41665 3.44267 3.91537 4.17409 4.36872 4.48307 4.50629 4.55397 4.61043 4.67276 4.89893 4.90379 4.97308 5.15668 5.19658 5.24199 5.26895 5.32095 5.36361 5.49027 5.50296 5.56465 5.63178 5.66665 5.71886 5.83265 5.87287 5.95581 5.98330 6.04052 6.08440 6.13787 6.19379 6.32000 6.33832 6.35913 6.42504 6.46789 6.66547 6.78536 6.92414 6.98729 7.62728 7.67263 8.32121 8.32279 8.33268 9.45135 10.01490 10.36595 11.37497 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003079 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.682280 B = 9090.756744 C = 9417.900101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.283 5.283 3 N -0.099 5.099 4 N -0.263 5.263 5 C -0.016 4.016 6 C -0.015 4.015 7 C -0.030 4.030 8 C -0.103 4.103 9 H 0.102 0.898 10 C 0.519 3.481 11 O -0.549 6.549 12 N -0.596 5.596 13 C 0.111 3.889 14 C -0.134 4.134 15 C 0.198 3.802 16 C -0.150 4.150 17 N -0.717 5.717 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.128 4.128 27 C 0.115 3.885 28 C -0.099 4.099 29 C -0.033 4.033 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 12.842 -11.948 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.077 5.077 4 N -0.127 5.127 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.070 4.070 8 C -0.125 4.125 9 H 0.120 0.880 10 C 0.306 3.694 11 O -0.428 6.428 12 N -0.328 5.328 13 C -0.011 4.011 14 C -0.174 4.174 15 C 0.106 3.894 16 C -0.210 4.210 17 N -0.359 5.359 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.732 3.268 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.167 4.167 27 C -0.007 4.007 28 C -0.137 4.137 29 C -0.072 4.072 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.104 0.896 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.403 14.192 -12.302 19.088 hybrid contribution -0.370 -1.128 1.273 1.741 sum -3.773 13.064 -11.029 17.508 Atomic orbital electron populations 1.22300 0.72706 1.06142 1.05104 1.46814 1.09181 1.04573 1.46960 1.78579 0.96152 1.11256 1.21664 1.74794 1.09572 1.11988 1.16330 1.21725 0.95068 0.91290 1.07517 1.21689 0.91296 0.91935 1.09958 1.20014 0.97852 0.85552 1.03582 1.21360 0.96184 0.92013 1.02958 0.87995 1.20279 0.77802 0.88076 0.83276 1.90668 1.52173 1.72250 1.27668 1.48137 1.56256 1.12774 1.15585 1.21927 0.97391 0.97124 0.84692 1.22386 0.94519 0.99227 1.01275 1.19519 0.91168 0.90277 0.88403 1.22226 0.97129 1.00886 1.00729 1.42511 1.48944 1.42471 1.01957 1.19088 1.19426 1.15270 0.82801 0.91219 1.24694 0.99521 0.98771 0.97649 1.69645 1.29655 1.25529 1.33050 0.86296 0.76930 0.77601 0.85958 1.21844 1.21866 1.20853 1.22081 0.95477 1.01796 0.97339 1.21579 0.95585 0.81466 1.02058 1.21469 0.96809 0.95171 1.00286 1.20009 0.92484 0.91509 1.03244 0.88955 0.88124 0.87867 0.89029 0.89356 0.88960 0.91283 0.93495 0.90702 0.93111 0.92572 0.94681 0.78099 0.93502 0.92048 0.90777 0.89908 0.90442 0.89827 0.90452 0.89637 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.27 59.84 0.67 1.10 16 2 N -0.28 -2.93 3.73 -64.01 -0.24 -3.17 16 3 N -0.10 -1.32 13.19 60.35 0.80 -0.52 16 4 N -0.26 -3.77 12.40 33.16 0.41 -3.36 16 5 C -0.02 -0.19 7.11 -83.12 -0.59 -0.78 16 6 C -0.01 -0.16 6.76 -82.50 -0.56 -0.72 16 7 C -0.03 -0.28 5.19 -27.73 -0.14 -0.43 16 8 C -0.10 -1.11 1.66 -91.49 -0.15 -1.26 16 9 H 0.10 1.05 6.25 -51.93 -0.32 0.73 16 10 C 0.52 7.20 6.77 -10.98 -0.07 7.13 16 11 O -0.55 -9.25 15.69 5.56 0.09 -9.16 16 12 N -0.60 -8.55 2.97 -172.50 -0.51 -9.06 16 13 C 0.11 1.58 6.04 -3.49 -0.02 1.56 16 14 C -0.13 -1.95 4.72 -26.38 -0.12 -2.07 16 15 C 0.20 3.28 0.74 -131.78 -0.10 3.18 16 16 C -0.15 -2.41 8.44 37.16 0.31 -2.10 16 17 N -0.72 -15.33 4.13 -47.19 -0.19 -15.52 16 18 C -0.23 -5.70 8.68 -15.06 -0.13 -5.83 16 19 H 0.07 1.66 6.70 -52.49 -0.35 1.30 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 22 Si 0.90 21.03 29.55 -169.99 -5.02 16.00 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.13 -1.88 4.96 -26.61 -0.13 -2.01 16 27 C 0.12 1.77 6.14 -3.71 -0.02 1.75 16 28 C -0.10 -1.01 4.59 -26.46 -0.12 -1.14 16 29 C -0.03 -0.33 6.30 -27.72 -0.17 -0.50 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.36 7.71 -51.93 -0.40 -0.04 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.09 0.71 7.55 -51.93 -0.39 0.32 16 35 H 0.09 1.65 7.74 -51.93 -0.40 1.25 16 36 H 0.07 0.80 5.12 -51.93 -0.27 0.54 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.18 7.31 -51.93 -0.38 0.81 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.97 7.27 -51.93 -0.38 0.60 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.38 9.03 6.46 -40.82 -0.26 8.76 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.27 7.03 -51.93 -0.37 0.90 16 47 H 0.08 1.35 6.94 -51.93 -0.36 0.99 16 48 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 49 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 50 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -31.80 392.93 -7.57 -39.37 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.09 Total: 7.43 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.45 Total: -2.48 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.99 Total: -57.08 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.80 -7.57 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733866327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.627 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds