Wall clock time and date at job start Wed Apr 1 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29112 * 126.00434 * 2 1 4 4 N 1.29019 * 110.25840 * 180.09647 * 3 2 1 5 5 C 1.32904 * 108.63592 * 0.02907 * 4 3 2 6 6 C 1.34388 * 126.01243 * 180.02562 * 2 1 3 7 7 C 1.50541 * 129.25108 * 359.69573 * 6 2 1 8 8 C 1.53442 * 108.32247 * 196.56980 * 7 6 2 9 9 H 1.08995 * 109.44947 * 70.29519 * 8 7 6 10 10 C 1.50703 * 109.45567 * 190.25736 * 8 7 6 11 11 O 1.21279 * 120.00457 * 95.43662 * 10 8 7 12 12 N 1.34780 * 119.99637 * 275.43791 * 10 8 7 13 13 C 1.46926 * 120.63111 * 355.03663 * 12 10 8 14 14 C 1.53626 * 108.53925 * 126.36959 * 13 12 10 15 15 C 1.53043 * 109.24329 * 54.85768 * 14 13 12 16 16 C 1.52998 * 109.45835 * 178.48592 * 15 14 13 17 17 N 1.46503 * 109.45885 * 58.53164 * 15 14 13 18 18 C 1.36930 * 120.00226 * 59.93139 * 17 15 14 19 19 H 1.08001 * 120.00282 * 359.97438 * 18 17 15 20 20 C 1.38816 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47348 * 89.99930 * 22 20 18 24 24 H 1.48498 * 109.47053 * 210.00316 * 22 20 18 25 25 H 1.48508 * 109.46894 * 329.99773 * 22 20 18 26 26 C 1.53035 * 109.53641 * 298.50964 * 15 14 13 27 27 C 1.46928 * 120.62847 * 175.31894 * 12 10 8 28 28 C 1.53106 * 109.55139 * 310.27579 * 8 7 6 29 29 C 1.50600 * 129.16585 * 179.89531 * 5 4 3 30 30 H 1.09005 * 109.47172 * 89.97856 * 1 2 3 31 31 H 1.08998 * 109.47355 * 209.97100 * 1 2 3 32 32 H 1.08996 * 109.47686 * 329.97650 * 1 2 3 33 33 H 1.09001 * 109.69461 * 76.85946 * 7 6 2 34 34 H 1.08999 * 109.69240 * 316.27237 * 7 6 2 35 35 H 1.09002 * 109.58559 * 246.20055 * 13 12 10 36 36 H 1.08998 * 109.58870 * 6.62744 * 13 12 10 37 37 H 1.09001 * 109.63849 * 294.86146 * 14 13 12 38 38 H 1.09000 * 109.45594 * 174.73861 * 14 13 12 39 39 H 1.09003 * 109.47067 * 180.02562 * 16 15 14 40 40 H 1.08997 * 109.47672 * 300.06685 * 16 15 14 41 41 H 1.08999 * 109.46957 * 60.07277 * 16 15 14 42 42 H 0.97002 * 119.99344 * 239.92896 * 17 15 14 43 43 H 0.97000 * 119.99639 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49749 * 301.41471 * 26 15 14 45 45 H 1.09000 * 109.52175 * 181.33717 * 26 15 14 46 46 H 1.08999 * 109.58648 * 353.37256 * 27 12 10 47 47 H 1.08993 * 109.58677 * 113.79743 * 27 12 10 48 48 H 1.08993 * 109.45503 * 190.10527 * 28 8 7 49 49 H 1.09000 * 109.45466 * 310.04481 * 28 8 7 50 50 H 1.09003 * 109.68974 * 76.76093 * 29 5 4 51 51 H 1.09002 * 109.71916 * 316.20187 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4657 0.6944 -0.0020 5 6 3.5327 -0.6330 -0.0041 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5429 0.0051 8 6 3.1015 -3.3635 0.4174 9 1 3.3141 -3.1932 1.4727 10 6 2.8267 -4.8278 0.1905 11 8 3.1859 -5.3599 -0.8384 12 7 2.1818 -5.5460 1.1311 13 6 1.8365 -4.9445 2.4264 14 6 0.3319 -5.1373 2.6689 15 6 -0.0108 -6.6246 2.5557 16 6 -1.5016 -6.8267 2.8338 17 7 0.7748 -7.3821 3.5332 18 6 0.6482 -7.1129 4.8698 19 1 -0.0304 -6.3419 5.2035 20 6 1.3922 -7.8312 5.7959 21 7 2.2188 -8.7712 5.3892 22 14 1.2190 -7.4645 7.6193 23 1 0.1450 -8.3130 8.1951 24 1 2.5025 -7.7561 8.3069 25 1 0.8721 -6.0325 7.8055 26 6 0.3166 -7.1192 1.1450 27 6 1.8161 -6.9472 0.8830 28 6 4.3084 -2.9351 -0.4217 29 6 4.7468 -1.5240 -0.0090 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.5488 -2.8415 -0.9921 34 1 1.0646 -2.7076 0.7183 35 1 2.4029 -5.4336 3.2189 36 1 2.0720 -3.8803 2.4094 37 1 -0.2340 -4.5760 1.9254 38 1 0.0762 -4.7800 3.6665 39 1 -1.7458 -7.8860 2.7537 40 1 -1.7350 -6.4745 3.8385 41 1 -2.0865 -6.2637 2.1064 42 1 1.3845 -8.0744 3.2334 43 1 2.7389 -9.2728 6.0363 44 1 -0.2491 -6.5392 0.4157 45 1 0.0504 -8.1726 1.0575 46 1 2.0380 -7.2049 -0.1526 47 1 2.3807 -7.5962 1.5522 48 1 5.1298 -3.6328 -0.2588 49 1 4.0356 -2.9360 -1.4770 50 1 5.1850 -1.5532 0.9886 51 1 5.4793 -1.1436 -0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733866327.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:58 Heat of formation + Delta-G solvation = 50.175526 kcal Electronic energy + Delta-G solvation = -32352.940384 eV Core-core repulsion = 28288.562130 eV Total energy + Delta-G solvation = -4064.378255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.42772 -41.50187 -39.44623 -37.56915 -36.01962 -35.85931 -34.14962 -32.41871 -31.51660 -31.20895 -30.77992 -29.06992 -28.64667 -26.06795 -25.61209 -24.61209 -24.21868 -23.39455 -22.36755 -21.28369 -20.32030 -19.36566 -18.92077 -18.32659 -18.03108 -17.64787 -16.78553 -16.64738 -16.31504 -15.63780 -15.54636 -15.43557 -15.03243 -14.90487 -14.84420 -14.77558 -14.63239 -14.21242 -14.04263 -14.01315 -13.62826 -13.45727 -13.17323 -13.03574 -13.02607 -12.82715 -12.66492 -12.56052 -12.54183 -12.47714 -12.15650 -12.12589 -12.04543 -11.94707 -11.69554 -11.53749 -11.42677 -11.03306 -10.93371 -10.85520 -10.60949 -9.87794 -9.54607 -8.85501 -7.83509 -5.08366 0.54833 1.38726 1.47475 1.50403 1.51962 1.58410 1.68548 2.05928 2.63041 3.10534 3.39175 3.51540 3.62551 3.73242 3.78795 3.82422 3.90534 3.98192 4.06224 4.13543 4.24230 4.26075 4.29288 4.38174 4.41982 4.49236 4.50860 4.59270 4.64492 4.72806 4.76242 4.79199 4.88609 4.91083 4.96263 5.02508 5.07652 5.08613 5.10549 5.17722 5.22531 5.23733 5.33187 5.40899 5.43225 5.63082 5.63996 5.69767 5.75878 6.39026 6.54178 7.19767 7.45887 7.46365 8.24529 8.45921 9.40387 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003079 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.682280 B = 9090.756744 C = 9417.900101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.274 5.274 3 N -0.127 5.127 4 N -0.300 5.300 5 C -0.032 4.032 6 C -0.010 4.010 7 C -0.022 4.022 8 C -0.097 4.097 9 H 0.110 0.890 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.595 5.595 13 C 0.117 3.883 14 C -0.128 4.128 15 C 0.186 3.814 16 C -0.145 4.145 17 N -0.725 5.725 18 C -0.206 4.206 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.953 3.047 23 H -0.297 1.297 24 H -0.307 1.307 25 H -0.267 1.267 26 C -0.118 4.118 27 C 0.119 3.881 28 C -0.093 4.093 29 C -0.028 4.028 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.370 0.630 43 H 0.244 0.756 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 14.692 -12.849 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.066 5.066 3 N -0.104 5.104 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.061 4.061 8 C -0.119 4.119 9 H 0.128 0.872 10 C 0.311 3.689 11 O -0.459 6.459 12 N -0.326 5.326 13 C -0.005 4.005 14 C -0.168 4.168 15 C 0.097 3.903 16 C -0.204 4.204 17 N -0.366 5.366 18 C -0.338 4.338 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.624 5.624 22 Si 0.785 3.215 23 H -0.225 1.225 24 H -0.234 1.234 25 H -0.192 1.192 26 C -0.156 4.156 27 C -0.004 4.004 28 C -0.131 4.131 29 C -0.067 4.067 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.203 0.797 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.111 0.889 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.693 16.118 -13.218 21.608 hybrid contribution 0.246 -1.692 1.436 2.233 sum -5.447 14.426 -11.782 19.406 Atomic orbital electron populations 1.22793 0.69918 1.07922 1.06891 1.47195 1.10695 1.03714 1.45037 1.78496 0.96326 1.12477 1.23128 1.74740 1.10455 1.13304 1.17810 1.22116 0.96486 0.90975 1.07797 1.21843 0.90910 0.92585 1.09222 1.20017 0.97423 0.84006 1.04652 1.21340 0.97223 0.89819 1.03526 0.87201 1.20742 0.76608 0.89095 0.82445 1.90663 1.53136 1.73160 1.28960 1.48144 1.56396 1.12298 1.15768 1.21829 0.96836 0.98458 0.83358 1.22315 0.94896 0.97538 1.02023 1.19890 0.90937 0.91237 0.88243 1.22147 0.96764 1.00547 1.00934 1.42724 1.49229 1.42638 1.01999 1.19416 1.17002 1.13347 0.84047 0.90326 1.25303 1.00753 0.99890 1.00834 1.69794 1.31682 1.27517 1.33362 0.85428 0.75762 0.77951 0.82397 1.22481 1.23400 1.19232 1.22001 0.94959 1.02050 0.96624 1.21412 0.95923 0.81897 1.01181 1.21399 0.96601 0.95278 0.99864 1.20006 0.92080 0.90735 1.03869 0.87133 0.85640 0.86907 0.88313 0.87036 0.93088 0.87966 0.89561 0.91678 0.94543 0.94088 0.91027 0.79713 0.94692 0.89223 0.91242 0.89877 0.93552 0.90218 0.91034 0.88881 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 11.27 127.77 1.44 1.88 16 2 N -0.27 -4.92 3.73 -356.42 -1.33 -6.25 16 3 N -0.13 -3.22 13.19 37.02 0.49 -2.73 16 4 N -0.30 -8.36 12.40 -48.99 -0.61 -8.97 16 5 C -0.03 -0.74 7.11 41.75 0.30 -0.44 16 6 C -0.01 -0.19 6.76 41.50 0.28 0.09 16 7 C -0.02 -0.31 5.19 29.95 0.16 -0.16 16 8 C -0.10 -1.81 1.66 -11.36 -0.02 -1.83 16 9 H 0.11 1.91 6.25 -2.39 -0.01 1.89 16 10 C 0.52 13.32 6.77 87.66 0.59 13.91 16 11 O -0.58 -18.62 15.69 -3.03 -0.05 -18.67 16 12 N -0.59 -15.85 2.97 -818.06 -2.43 -18.27 16 13 C 0.12 3.05 6.04 86.51 0.52 3.57 16 14 C -0.13 -3.24 4.72 30.82 0.15 -3.10 16 15 C 0.19 5.75 0.74 3.63 0.00 5.75 16 16 C -0.14 -4.21 8.44 71.98 0.61 -3.60 16 17 N -0.73 -30.85 4.13 -303.23 -1.25 -32.10 16 18 C -0.21 -9.91 8.68 84.04 0.73 -9.18 16 19 H 0.08 3.61 6.70 -2.91 -0.02 3.59 16 20 C -0.08 -4.04 5.50 84.86 0.47 -3.57 16 21 N -0.97 -56.39 13.06 21.65 0.28 -56.11 16 22 Si 0.95 43.69 29.55 68.60 2.03 45.72 16 23 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C -0.12 -3.17 4.96 30.67 0.15 -3.02 16 27 C 0.12 3.54 6.14 86.36 0.53 4.07 16 28 C -0.09 -1.75 4.59 30.77 0.14 -1.60 16 29 C -0.03 -0.51 6.30 29.96 0.19 -0.32 16 30 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.13 0.25 7.71 -2.39 -0.02 0.23 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.11 1.13 7.55 -2.39 -0.02 1.11 16 35 H 0.05 1.79 7.74 -2.39 -0.02 1.77 16 36 H 0.10 1.98 5.12 -2.39 -0.01 1.96 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.82 7.31 -2.39 -0.02 1.81 16 39 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.04 1.30 7.27 -2.39 -0.02 1.29 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.37 17.82 6.46 -92.71 -0.60 17.22 16 43 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.08 2.48 7.03 -2.39 -0.02 2.46 16 47 H 0.05 1.67 6.94 -2.39 -0.02 1.65 16 48 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 49 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.51 392.93 3.72 -67.79 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.35 Total: 27.13 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.23 Total: 2.45 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -4.84 Total: -124.43 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.51 3.72 -67.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733866327.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.965 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds