Wall clock time and date at job start Wed Apr 1 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 126.46072 * 2 1 4 4 N 1.28911 * 109.73452 * 180.02562 * 3 2 1 5 5 C 1.29834 * 109.48240 * 0.02590 * 4 3 2 6 6 N 1.34685 * 126.46497 * 179.97438 * 2 1 3 7 7 C 1.46260 * 128.85098 * 359.87803 * 6 2 1 8 8 C 1.53318 * 108.73114 * 197.13052 * 7 6 2 9 9 H 1.09000 * 109.42979 * 69.71273 * 8 7 6 10 10 C 1.50698 * 109.45281 * 189.66037 * 8 7 6 11 11 O 1.21278 * 120.00269 * 22.20090 * 10 8 7 12 12 N 1.34779 * 119.99801 * 202.20961 * 10 8 7 13 13 C 1.46916 * 120.62936 * 184.19976 * 12 10 8 14 14 C 1.52764 * 109.00953 * 233.58129 * 13 12 10 15 15 C 1.53043 * 109.38113 * 305.58713 * 14 13 12 16 16 C 1.52998 * 109.46078 * 181.25842 * 15 14 13 17 17 N 1.46506 * 109.45089 * 301.22768 * 15 14 13 18 18 C 1.36938 * 119.99555 * 300.05940 * 17 15 14 19 19 H 1.07997 * 120.00475 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99741 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99874 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99799 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47095 * 90.00544 * 22 20 18 24 24 H 1.48500 * 109.46690 * 209.99756 * 22 20 18 25 25 H 1.48494 * 109.47425 * 329.99943 * 22 20 18 26 26 C 1.53041 * 109.53799 * 61.23912 * 15 14 13 27 27 C 1.46932 * 120.62930 * 4.47553 * 12 10 8 28 28 C 1.53141 * 109.57702 * 309.69626 * 8 7 6 29 29 C 1.50802 * 128.52645 * 179.90939 * 5 4 3 30 30 H 1.08999 * 109.47450 * 270.02653 * 1 2 3 31 31 H 1.09000 * 109.47139 * 30.02737 * 1 2 3 32 32 H 1.08995 * 109.47403 * 150.02431 * 1 2 3 33 33 H 1.09002 * 109.59488 * 77.35309 * 7 6 2 34 34 H 1.09005 * 109.71577 * 316.98452 * 7 6 2 35 35 H 1.09000 * 109.58978 * 353.41640 * 13 12 10 36 36 H 1.09003 * 109.59003 * 113.83769 * 13 12 10 37 37 H 1.09000 * 109.56491 * 185.55334 * 14 13 12 38 38 H 1.08996 * 109.38576 * 65.51455 * 14 13 12 39 39 H 1.09002 * 109.47138 * 299.93341 * 16 15 14 40 40 H 1.09005 * 109.47035 * 59.93430 * 16 15 14 41 41 H 1.09000 * 109.47137 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00110 * 120.05984 * 17 15 14 43 43 H 0.97004 * 120.00026 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.49848 * 178.68247 * 26 15 14 45 45 H 1.09000 * 109.52263 * 58.60214 * 26 15 14 46 46 H 1.09004 * 109.58134 * 246.15793 * 27 12 10 47 47 H 1.08996 * 109.58664 * 6.44178 * 27 12 10 48 48 H 1.08996 * 109.49690 * 309.47140 * 28 8 7 49 49 H 1.09001 * 109.49488 * 189.37906 * 28 8 7 50 50 H 1.09006 * 109.72354 * 76.21832 * 29 5 4 51 51 H 1.08997 * 109.73271 * 315.53969 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9367 -2.4980 0.0035 8 6 3.1549 -3.3253 0.4306 9 1 3.3613 -3.1485 1.4861 10 6 2.8688 -4.7888 0.2132 11 8 2.0157 -5.1289 -0.5789 12 7 3.5610 -5.7198 0.8992 13 6 3.3588 -7.1503 0.6324 14 6 3.0330 -7.8602 1.9453 15 6 4.1293 -7.5604 2.9703 16 6 3.8211 -8.2959 4.2760 17 7 5.4216 -8.0125 2.4488 18 6 5.6102 -9.3325 2.1371 19 1 4.8065 -10.0404 2.2761 20 6 6.8345 -9.7608 1.6425 21 7 7.8141 -8.8981 1.4735 22 14 7.0915 -11.5613 1.2166 23 1 6.7182 -11.7927 -0.2019 24 1 8.5189 -11.9184 1.4173 25 1 6.2421 -12.4042 2.0959 26 6 4.1849 -6.0540 3.2345 27 6 4.5277 -5.3236 1.9323 28 6 4.3721 -2.9141 -0.4029 29 6 4.8051 -1.4970 -0.0042 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8901 -0.5134 33 1 1.6248 -2.7963 -0.9974 34 1 1.1189 -2.6623 0.7053 35 1 2.5315 -7.2785 -0.0657 36 1 4.2680 -7.5748 0.2065 37 1 2.9783 -8.9354 1.7751 38 1 2.0749 -7.5023 2.3221 39 1 2.8598 -7.9593 4.6645 40 1 3.7814 -9.3689 4.0881 41 1 4.6020 -8.0829 5.0060 42 1 6.1436 -7.3767 2.3243 43 1 8.6697 -9.1974 1.1282 44 1 4.9499 -5.8437 3.9819 45 1 3.2162 -5.7122 3.5992 46 1 5.5342 -5.5960 1.6146 47 1 4.4732 -4.2464 2.0898 48 1 4.1108 -2.9304 -1.4609 49 1 5.1906 -3.6100 -0.2191 50 1 5.2483 -1.5143 0.9915 51 1 5.5304 -1.1175 -0.7239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733869063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:05 Heat of formation + Delta-G solvation = 51.290477 kcal Electronic energy + Delta-G solvation = -32080.193266 eV Core-core repulsion = 28015.863359 eV Total energy + Delta-G solvation = -4064.329907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.52078 -40.53125 -38.33713 -36.87037 -34.79673 -34.30533 -32.48120 -31.93319 -31.05279 -30.47085 -29.15774 -27.91697 -27.59175 -25.31441 -24.11475 -23.65206 -23.00073 -22.51023 -21.53857 -20.35233 -19.31562 -18.33294 -17.57995 -17.19266 -16.86265 -16.47181 -15.83532 -15.40891 -15.22578 -14.76270 -14.49516 -14.22505 -14.18863 -14.07680 -13.87654 -13.73108 -13.51185 -13.37270 -13.13137 -12.95551 -12.66915 -12.53293 -12.37851 -12.13658 -11.73636 -11.65123 -11.52252 -11.48184 -11.36172 -11.32283 -10.98461 -10.89007 -10.79649 -10.50198 -10.45795 -10.28877 -10.23618 -9.91725 -9.72080 -9.57351 -9.15606 -9.02842 -8.42573 -7.06972 -5.87346 -3.15762 1.60041 2.14670 2.50628 2.67613 3.02336 3.35935 3.42140 3.43542 3.82256 3.99116 4.06811 4.22186 4.26351 4.49553 4.54520 4.66691 4.72663 4.87394 4.97419 4.99352 5.09306 5.15717 5.20798 5.26386 5.31807 5.39455 5.45339 5.48677 5.52345 5.56644 5.60524 5.68874 5.70226 5.75957 5.81020 5.91117 5.99317 6.06505 6.14401 6.24136 6.30908 6.39590 6.51321 6.60580 6.63580 6.77084 6.90404 6.94594 7.50642 7.62533 8.10833 8.31036 8.56398 9.43201 9.97928 10.33230 11.35126 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.002611 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.167388 B =10722.797705 C =11110.956287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.301 5.301 4 N -0.292 5.292 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.122 3.878 8 C -0.124 4.124 9 H 0.108 0.892 10 C 0.523 3.477 11 O -0.549 6.549 12 N -0.590 5.590 13 C 0.120 3.880 14 C -0.134 4.134 15 C 0.198 3.802 16 C -0.151 4.151 17 N -0.716 5.716 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.131 4.131 27 C 0.105 3.895 28 C -0.117 4.117 29 C -0.031 4.031 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 12.934 0.174 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.142 5.142 4 N -0.131 5.131 5 C -0.092 4.092 6 N -0.159 5.159 7 C -0.002 4.002 8 C -0.146 4.146 9 H 0.125 0.875 10 C 0.309 3.691 11 O -0.428 6.428 12 N -0.321 5.321 13 C -0.001 4.001 14 C -0.174 4.174 15 C 0.107 3.893 16 C -0.210 4.210 17 N -0.358 5.358 18 C -0.364 4.364 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.169 4.169 27 C -0.018 4.018 28 C -0.155 4.155 29 C -0.071 4.071 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.646 13.991 -0.264 18.205 hybrid contribution 0.114 -2.315 -0.114 2.321 sum -11.531 11.676 -0.378 16.414 Atomic orbital electron populations 1.20216 0.83746 1.04611 1.04051 1.24654 0.97088 0.82775 1.04531 1.74479 0.96158 1.23693 1.19871 1.74043 1.12252 1.08056 1.18746 1.24743 0.87088 0.92543 1.04826 1.45986 1.07020 1.08431 1.54458 1.21808 0.97641 0.75378 1.05329 1.21648 0.96260 0.93423 1.03242 0.87456 1.19893 0.81366 0.86744 0.81130 1.90690 1.33190 1.82081 1.36871 1.48079 1.40049 1.07193 1.36784 1.21556 1.02997 0.77628 0.97907 1.22233 0.98095 1.01010 0.96072 1.19524 0.87646 0.90413 0.91760 1.22225 0.99007 1.01524 0.98252 1.42481 1.09007 1.07465 1.76893 1.19096 0.96752 0.85381 1.35193 0.91185 1.24682 0.96312 0.97400 1.02270 1.69632 1.03629 1.32971 1.51834 0.86279 0.77033 0.85206 0.78200 1.21783 1.21870 1.20866 1.22093 1.01737 0.96600 0.96498 1.21875 0.93530 0.98436 0.87944 1.21690 0.96985 0.96373 1.00467 1.20242 0.91147 0.90875 1.04789 0.89597 0.88667 0.90309 0.87569 0.88301 0.90419 0.89251 0.90571 0.93447 0.94620 0.92460 0.93107 0.78218 0.93531 0.90500 0.91874 0.89680 0.90681 0.90115 0.88426 0.88233 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.29 36.01 0.37 -0.08 16 2 C 0.18 1.98 8.07 -155.45 -1.25 0.73 16 3 N -0.30 -4.35 12.23 32.70 0.40 -3.95 16 4 N -0.29 -4.28 12.21 32.76 0.40 -3.88 16 5 C 0.18 2.05 7.75 -155.30 -1.20 0.85 16 6 N -0.47 -4.97 3.11 -110.86 -0.35 -5.31 16 7 C 0.12 1.10 5.71 -4.01 -0.02 1.08 16 8 C -0.12 -1.15 1.71 -91.54 -0.16 -1.31 16 9 H 0.11 0.87 6.19 -51.93 -0.32 0.55 16 10 C 0.52 6.67 6.81 -10.99 -0.07 6.60 16 11 O -0.55 -8.68 15.27 5.56 0.08 -8.60 16 12 N -0.59 -7.97 2.98 -173.03 -0.52 -8.49 16 13 C 0.12 1.94 6.16 -3.94 -0.02 1.91 16 14 C -0.13 -2.13 4.69 -26.83 -0.13 -2.26 16 15 C 0.20 3.26 0.74 -131.77 -0.10 3.16 16 16 C -0.15 -2.43 8.44 37.16 0.31 -2.12 16 17 N -0.72 -14.99 4.14 -47.19 -0.20 -15.19 16 18 C -0.23 -5.66 8.68 -15.06 -0.13 -5.79 16 19 H 0.07 1.69 6.70 -52.49 -0.35 1.34 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -25.77 13.06 55.49 0.72 -25.05 16 22 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.13 -1.71 4.96 -26.61 -0.13 -1.84 16 27 C 0.10 1.27 5.71 -3.71 -0.02 1.25 16 28 C -0.12 -1.00 5.20 -26.43 -0.14 -1.14 16 29 C -0.03 -0.26 6.33 -27.60 -0.17 -0.43 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 33 H 0.11 1.04 7.53 -51.93 -0.39 0.64 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.09 1.70 7.74 -51.93 -0.40 1.30 16 37 H 0.08 1.32 7.31 -51.93 -0.38 0.94 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.01 7.27 -51.93 -0.38 0.64 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.38 8.59 6.46 -40.82 -0.26 8.33 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.20 6.94 -51.93 -0.36 0.84 16 47 H 0.07 0.67 5.42 -51.93 -0.28 0.39 16 48 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.10 0.82 7.80 -51.93 -0.41 0.42 16 50 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -31.73 392.87 -9.62 -41.34 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.10 Total: 6.92 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.97 Total: 0.22 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.47 Total: -61.87 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.73 -9.62 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733869063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.632 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds