Wall clock time and date at job start Wed Apr 1 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30843 * 126.46072 * 2 1 4 4 N 1.28911 * 109.73452 * 180.02562 * 3 2 1 5 5 C 1.29834 * 109.48240 * 0.02590 * 4 3 2 6 6 N 1.34685 * 126.46497 * 179.97438 * 2 1 3 7 7 C 1.46260 * 128.85098 * 359.87803 * 6 2 1 8 8 C 1.53318 * 108.73114 * 197.13052 * 7 6 2 9 9 H 1.09000 * 109.42979 * 69.71273 * 8 7 6 10 10 C 1.50698 * 109.45281 * 189.66037 * 8 7 6 11 11 O 1.21278 * 120.00269 * 22.20090 * 10 8 7 12 12 N 1.34779 * 119.99801 * 202.20961 * 10 8 7 13 13 C 1.46916 * 120.62936 * 184.19976 * 12 10 8 14 14 C 1.52764 * 109.00953 * 233.58129 * 13 12 10 15 15 C 1.53043 * 109.38113 * 305.58713 * 14 13 12 16 16 C 1.52998 * 109.46078 * 181.25842 * 15 14 13 17 17 N 1.46506 * 109.45089 * 301.22768 * 15 14 13 18 18 C 1.36938 * 119.99555 * 300.05940 * 17 15 14 19 19 H 1.07997 * 120.00475 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99741 * 179.97438 * 18 17 15 21 21 N 1.31616 * 119.99874 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99799 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47095 * 90.00544 * 22 20 18 24 24 H 1.48500 * 109.46690 * 209.99756 * 22 20 18 25 25 H 1.48494 * 109.47425 * 329.99943 * 22 20 18 26 26 C 1.53041 * 109.53799 * 61.23912 * 15 14 13 27 27 C 1.46932 * 120.62930 * 4.47553 * 12 10 8 28 28 C 1.53141 * 109.57702 * 309.69626 * 8 7 6 29 29 C 1.50802 * 128.52645 * 179.90939 * 5 4 3 30 30 H 1.08999 * 109.47450 * 270.02653 * 1 2 3 31 31 H 1.09000 * 109.47139 * 30.02737 * 1 2 3 32 32 H 1.08995 * 109.47403 * 150.02431 * 1 2 3 33 33 H 1.09002 * 109.59488 * 77.35309 * 7 6 2 34 34 H 1.09005 * 109.71577 * 316.98452 * 7 6 2 35 35 H 1.09000 * 109.58978 * 353.41640 * 13 12 10 36 36 H 1.09003 * 109.59003 * 113.83769 * 13 12 10 37 37 H 1.09000 * 109.56491 * 185.55334 * 14 13 12 38 38 H 1.08996 * 109.38576 * 65.51455 * 14 13 12 39 39 H 1.09002 * 109.47138 * 299.93341 * 16 15 14 40 40 H 1.09005 * 109.47035 * 59.93430 * 16 15 14 41 41 H 1.09000 * 109.47137 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00110 * 120.05984 * 17 15 14 43 43 H 0.97004 * 120.00026 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.49848 * 178.68247 * 26 15 14 45 45 H 1.09000 * 109.52263 * 58.60214 * 26 15 14 46 46 H 1.09004 * 109.58134 * 246.15793 * 27 12 10 47 47 H 1.08996 * 109.58664 * 6.44178 * 27 12 10 48 48 H 1.08996 * 109.49690 * 309.47140 * 28 8 7 49 49 H 1.09001 * 109.49488 * 189.37906 * 28 8 7 50 50 H 1.09006 * 109.72354 * 76.21832 * 29 5 4 51 51 H 1.08997 * 109.73271 * 315.53969 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9367 -2.4980 0.0035 8 6 3.1549 -3.3253 0.4306 9 1 3.3613 -3.1485 1.4861 10 6 2.8688 -4.7888 0.2132 11 8 2.0157 -5.1289 -0.5789 12 7 3.5610 -5.7198 0.8992 13 6 3.3588 -7.1503 0.6324 14 6 3.0330 -7.8602 1.9453 15 6 4.1293 -7.5604 2.9703 16 6 3.8211 -8.2959 4.2760 17 7 5.4216 -8.0125 2.4488 18 6 5.6102 -9.3325 2.1371 19 1 4.8065 -10.0404 2.2761 20 6 6.8345 -9.7608 1.6425 21 7 7.8141 -8.8981 1.4735 22 14 7.0915 -11.5613 1.2166 23 1 6.7182 -11.7927 -0.2019 24 1 8.5189 -11.9184 1.4173 25 1 6.2421 -12.4042 2.0959 26 6 4.1849 -6.0540 3.2345 27 6 4.5277 -5.3236 1.9323 28 6 4.3721 -2.9141 -0.4029 29 6 4.8051 -1.4970 -0.0042 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3634 -0.8901 -0.5134 33 1 1.6248 -2.7963 -0.9974 34 1 1.1189 -2.6623 0.7053 35 1 2.5315 -7.2785 -0.0657 36 1 4.2680 -7.5748 0.2065 37 1 2.9783 -8.9354 1.7751 38 1 2.0749 -7.5023 2.3221 39 1 2.8598 -7.9593 4.6645 40 1 3.7814 -9.3689 4.0881 41 1 4.6020 -8.0829 5.0060 42 1 6.1436 -7.3767 2.3243 43 1 8.6697 -9.1974 1.1282 44 1 4.9499 -5.8437 3.9819 45 1 3.2162 -5.7122 3.5992 46 1 5.5342 -5.5960 1.6146 47 1 4.4732 -4.2464 2.0898 48 1 4.1108 -2.9304 -1.4609 49 1 5.1906 -3.6100 -0.2191 50 1 5.2483 -1.5143 0.9915 51 1 5.5304 -1.1175 -0.7239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733869063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:04 Heat of formation + Delta-G solvation = 33.114646 kcal Electronic energy + Delta-G solvation = -32080.981429 eV Core-core repulsion = 28015.863359 eV Total energy + Delta-G solvation = -4065.118070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.36930 -41.59921 -39.53243 -37.78878 -36.10523 -35.13431 -34.15637 -32.86206 -31.98639 -31.35305 -30.81486 -29.14166 -28.33138 -26.19285 -25.87401 -24.54107 -24.18594 -23.59728 -22.35868 -21.33225 -20.32279 -19.51770 -18.98302 -18.60828 -17.65782 -17.42189 -16.85602 -16.56258 -16.34408 -15.94995 -15.60004 -15.43636 -15.26982 -15.08374 -14.94539 -14.86013 -14.64119 -14.28156 -14.11814 -13.94194 -13.56731 -13.47734 -13.25896 -13.19528 -13.04233 -12.87535 -12.66423 -12.63167 -12.60703 -12.50058 -12.29497 -12.16434 -12.11968 -11.97376 -11.74399 -11.45907 -11.36796 -11.23766 -11.05484 -10.83807 -10.72102 -10.01782 -9.62305 -8.86900 -7.86245 -5.09838 0.79938 1.33452 1.47825 1.50326 1.50874 1.55633 1.77919 2.00714 2.60828 3.07189 3.19447 3.27381 3.48373 3.51687 3.55773 3.74672 3.87376 3.90071 4.00018 4.05225 4.13125 4.22358 4.26726 4.30344 4.32475 4.49893 4.54978 4.63001 4.65649 4.66734 4.69028 4.82338 4.84013 4.85327 4.94445 4.96056 5.00851 5.02057 5.02650 5.08359 5.11969 5.20351 5.23507 5.36130 5.39674 5.61376 5.64724 5.68884 5.88014 6.37535 6.45284 7.06339 7.45716 7.68142 8.22424 8.45443 9.36954 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.002611 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.167388 B =10722.797705 C =11110.956287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.181 3.819 3 N -0.346 5.346 4 N -0.334 5.334 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.124 3.876 8 C -0.113 4.113 9 H 0.130 0.870 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.591 5.591 13 C 0.129 3.871 14 C -0.126 4.126 15 C 0.188 3.812 16 C -0.146 4.146 17 N -0.721 5.721 18 C -0.209 4.209 19 H 0.070 0.930 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.950 3.050 23 H -0.295 1.295 24 H -0.303 1.303 25 H -0.275 1.275 26 C -0.125 4.125 27 C 0.107 3.893 28 C -0.111 4.111 29 C -0.025 4.025 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.375 0.625 43 H 0.246 0.754 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.116 0.884 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.121 0.879 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 13.823 1.511 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 N -0.186 5.186 4 N -0.172 5.172 5 C -0.094 4.094 6 N -0.159 5.159 7 C 0.002 3.998 8 C -0.134 4.134 9 H 0.148 0.852 10 C 0.314 3.686 11 O -0.461 6.461 12 N -0.321 5.321 13 C 0.007 3.993 14 C -0.166 4.166 15 C 0.098 3.902 16 C -0.205 4.205 17 N -0.362 5.362 18 C -0.342 4.342 19 H 0.088 0.912 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.781 3.219 23 H -0.223 1.223 24 H -0.230 1.230 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.015 4.015 28 C -0.150 4.150 29 C -0.065 4.065 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.209 0.791 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.139 0.861 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.498 14.893 1.101 20.130 hybrid contribution 0.546 -2.584 -0.536 2.695 sum -12.952 12.308 0.564 17.877 Atomic orbital electron populations 1.20435 0.80848 1.05742 1.05537 1.25398 0.98609 0.82216 1.02476 1.74391 0.96638 1.25489 1.22089 1.73945 1.12857 1.09776 1.20656 1.25263 0.88345 0.92211 1.03544 1.46080 1.06662 1.08827 1.54289 1.21859 0.98001 0.74369 1.05565 1.21595 0.96620 0.90561 1.04663 0.85190 1.20380 0.80372 0.87839 0.79991 1.90685 1.34579 1.82815 1.37997 1.48060 1.40536 1.06131 1.37389 1.21201 1.00853 0.79519 0.97750 1.22129 0.98888 0.99822 0.95775 1.19847 0.85479 0.93166 0.91683 1.22152 1.00529 1.00032 0.97777 1.42623 1.10667 1.06116 1.76756 1.19338 0.95929 0.86891 1.32000 0.91188 1.25228 0.96857 0.99999 1.04278 1.69747 1.03697 1.33979 1.54262 0.85483 0.76201 0.82492 0.77681 1.22305 1.22979 1.20027 1.22067 1.03510 0.93653 0.97139 1.21949 0.91948 1.00714 0.86889 1.21647 0.96825 0.96649 0.99857 1.20368 0.90082 0.89736 1.06271 0.87787 0.88142 0.88565 0.88312 0.86305 0.90976 0.92993 0.92626 0.91190 0.91493 0.94712 0.93685 0.79133 0.94531 0.89815 0.89206 0.91889 0.86572 0.91077 0.87939 0.86143 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.29 71.24 0.73 0.00 16 2 C 0.18 3.75 8.07 138.14 1.11 4.86 16 3 N -0.35 -9.79 12.23 -50.47 -0.62 -10.41 16 4 N -0.33 -9.58 12.21 -50.27 -0.61 -10.19 16 5 C 0.18 3.78 7.75 138.14 1.07 4.85 16 6 N -0.47 -8.86 3.11 -504.64 -1.57 -10.43 16 7 C 0.12 1.89 5.71 86.53 0.49 2.38 16 8 C -0.11 -1.73 1.71 -11.39 -0.02 -1.75 16 9 H 0.13 1.45 6.19 -2.39 -0.01 1.43 16 10 C 0.53 12.12 6.81 87.66 0.60 12.72 16 11 O -0.58 -17.35 15.27 -3.02 -0.05 -17.40 16 12 N -0.59 -14.68 2.98 -819.74 -2.44 -17.12 16 13 C 0.13 4.08 6.16 86.22 0.53 4.61 16 14 C -0.13 -3.82 4.69 30.53 0.14 -3.68 16 15 C 0.19 5.83 0.74 3.63 0.00 5.83 16 16 C -0.15 -4.38 8.44 71.98 0.61 -3.77 16 17 N -0.72 -29.95 4.14 -303.21 -1.25 -31.20 16 18 C -0.21 -10.21 8.68 84.03 0.73 -9.48 16 19 H 0.07 3.38 6.70 -2.91 -0.02 3.36 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 21 N -0.96 -54.53 13.06 21.65 0.28 -54.25 16 22 Si 0.95 44.11 29.55 68.60 2.03 46.14 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C -0.13 -2.83 4.96 30.67 0.15 -2.68 16 27 C 0.11 2.27 5.71 86.36 0.49 2.76 16 28 C -0.11 -1.63 5.20 30.79 0.16 -1.47 16 29 C -0.03 -0.36 6.33 30.03 0.19 -0.17 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 0.72 8.04 -2.39 -0.02 0.70 16 33 H 0.10 1.70 7.53 -2.39 -0.02 1.69 16 34 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 2.34 7.00 -2.39 -0.02 2.32 16 36 H 0.05 2.03 7.74 -2.39 -0.02 2.01 16 37 H 0.06 1.90 7.31 -2.39 -0.02 1.88 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.18 7.27 -2.38 -0.02 1.16 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.38 16.85 6.46 -92.71 -0.60 16.25 16 43 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.67 6.94 -2.38 -0.02 1.66 16 47 H 0.12 1.52 5.42 -2.39 -0.01 1.51 16 48 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.10 1.46 7.80 -2.39 -0.02 1.45 16 50 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.43 392.87 3.58 -67.85 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.35 Total: 25.31 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.47 Total: 11.70 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -6.22 Total: -133.60 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.43 3.58 -67.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733869063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.966 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds