Wall clock time and date at job start Wed Apr 1 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46062 * 2 1 4 4 N 1.28907 * 109.73845 * 179.97438 * 3 2 1 5 5 C 1.29834 * 109.48104 * 359.97163 * 4 3 2 6 6 N 1.34693 * 126.46578 * 179.97438 * 2 1 3 7 7 C 1.46245 * 128.85544 * 0.14047 * 6 2 1 8 8 C 1.53320 * 108.73009 * 162.85725 * 7 6 2 9 9 H 1.09001 * 109.45243 * 290.30501 * 8 7 6 10 10 C 1.50701 * 109.44998 * 170.35593 * 8 7 6 11 11 O 1.21285 * 120.00349 * 359.95600 * 10 8 7 12 12 N 1.34776 * 119.99851 * 179.97438 * 10 8 7 13 13 C 1.46504 * 120.00217 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47284 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47074 * 180.02562 * 14 13 12 16 16 N 1.46508 * 109.47281 * 179.97438 * 15 14 13 17 17 C 1.36933 * 119.99711 * 269.99993 * 16 15 14 18 18 H 1.08001 * 119.99807 * 141.58962 * 17 16 15 19 19 C 1.38807 * 120.00411 * 321.58526 * 17 16 15 20 20 N 1.31614 * 120.00489 * 156.95365 * 19 17 16 21 21 Si 1.86808 * 119.99722 * 336.95643 * 19 17 16 22 22 H 1.48505 * 109.46702 * 95.45185 * 21 19 17 23 23 H 1.48501 * 109.47228 * 215.45043 * 21 19 17 24 24 H 1.48493 * 109.47302 * 335.45313 * 21 19 17 25 25 C 1.46498 * 119.99701 * 89.99474 * 16 15 14 26 26 C 1.52999 * 117.49446 * 165.72217 * 25 16 15 27 27 C 1.52996 * 117.50091 * 234.37964 * 25 16 15 28 28 C 1.53138 * 109.56519 * 50.33526 * 8 7 6 29 29 C 1.50795 * 128.52373 * 180.09941 * 5 4 3 30 30 H 1.08998 * 109.47329 * 270.02902 * 1 2 3 31 31 H 1.08999 * 109.47510 * 30.03261 * 1 2 3 32 32 H 1.09001 * 109.46998 * 150.03306 * 1 2 3 33 33 H 1.09007 * 109.57393 * 43.09566 * 7 6 2 34 34 H 1.08997 * 109.61734 * 282.64480 * 7 6 2 35 35 H 0.97008 * 119.99846 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.46894 * 59.99950 * 13 12 10 37 37 H 1.09000 * 109.46924 * 300.00024 * 13 12 10 38 38 H 1.09003 * 109.46904 * 59.99812 * 14 13 12 39 39 H 1.09000 * 109.46916 * 300.00370 * 14 13 12 40 40 H 1.09003 * 109.47573 * 60.00021 * 15 14 13 41 41 H 1.09000 * 109.47387 * 299.99880 * 15 14 13 42 42 H 0.97001 * 120.00307 * 179.97438 * 20 19 17 43 43 H 1.09001 * 115.55073 * 20.05831 * 25 16 15 44 44 H 1.09003 * 117.49890 * 215.00472 * 26 25 16 45 45 H 1.09002 * 117.50028 * 0.02562 * 26 25 16 46 46 H 1.09009 * 117.49488 * 359.97438 * 27 25 16 47 47 H 1.08999 * 117.50123 * 144.97600 * 27 25 16 48 48 H 1.08998 * 109.49923 * 50.50416 * 28 8 7 49 49 H 1.08998 * 109.49975 * 170.57995 * 28 8 7 50 50 H 1.08996 * 109.73509 * 44.44842 * 29 5 4 51 51 H 1.09002 * 109.77153 * 283.78731 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9370 -2.4979 -0.0017 8 6 3.1553 -3.3254 -0.4281 9 1 3.3622 -3.1493 -1.4837 10 6 2.8692 -4.7888 -0.2101 11 8 1.7988 -5.1368 0.2418 12 7 3.8029 -5.7110 -0.5171 13 6 3.5251 -7.1337 -0.3047 14 6 4.7405 -7.9598 -0.7302 15 6 4.4501 -9.4455 -0.5090 16 7 5.6137 -10.2367 -0.9170 17 6 5.7191 -10.6843 -2.2068 18 1 6.6804 -10.6919 -2.6989 19 6 4.5904 -11.1284 -2.8818 20 7 4.5674 -11.1272 -4.1977 21 14 3.1038 -11.7277 -1.9223 22 1 2.1306 -10.6160 -1.7722 23 1 2.4633 -12.8510 -2.6525 24 1 3.5356 -12.1923 -0.5796 25 6 6.6645 -10.5487 0.0549 26 6 7.6714 -11.6384 -0.3188 27 6 8.1007 -10.1692 -0.3112 28 6 4.3720 -2.9139 0.4058 29 6 4.8052 -1.4968 0.0045 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5133 33 1 1.1203 -2.6605 -0.7052 34 1 1.6249 -2.7960 0.9992 35 1 4.6590 -5.4327 -0.8786 36 1 2.6596 -7.4274 -0.8986 37 1 3.3180 -7.3098 0.7509 38 1 5.6057 -7.6658 -0.1359 39 1 4.9480 -7.7837 -1.7857 40 1 3.5850 -9.7392 -1.1036 41 1 4.2423 -9.6219 0.5464 42 1 3.7788 -11.4379 -4.6694 43 1 6.3744 -10.4694 1.1026 44 1 8.0438 -12.2760 0.4830 45 1 7.5522 -12.1228 -1.2880 46 1 8.2638 -9.6877 -1.2754 47 1 8.7555 -9.8397 0.4956 48 1 4.1101 -2.9295 1.4638 49 1 5.1905 -3.6101 0.2232 50 1 5.5305 -1.1172 0.7241 51 1 5.2492 -1.5146 -0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752293049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:13 Heat of formation + Delta-G solvation = 81.359570 kcal Electronic energy + Delta-G solvation = -30277.548496 eV Core-core repulsion = 26214.522482 eV Total energy + Delta-G solvation = -4063.026013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.63381 -40.32687 -37.58808 -37.17038 -35.63518 -34.52771 -33.77643 -32.26710 -31.73113 -30.89182 -29.85057 -27.70018 -26.13008 -24.82395 -23.87137 -23.42066 -21.75287 -21.56491 -21.45881 -20.81861 -19.85814 -19.80302 -17.85398 -17.00692 -16.75876 -16.46421 -16.02229 -15.94867 -15.56114 -15.31591 -15.11503 -14.73162 -14.54101 -14.30433 -13.95692 -13.91193 -13.61761 -13.48771 -13.02718 -12.90661 -12.67410 -12.60313 -12.48909 -12.28760 -12.13099 -11.86503 -11.71492 -11.54838 -11.27222 -11.16446 -10.90394 -10.72454 -10.67739 -10.60813 -10.44582 -10.21297 -10.04124 -9.85863 -9.69377 -9.38726 -9.26955 -9.19469 -8.58546 -6.82982 -6.14448 -3.57149 1.49088 2.02717 2.28828 2.56987 2.92154 3.20374 3.38451 3.43498 3.63181 3.84504 4.00937 4.04852 4.14490 4.38986 4.49495 4.56649 4.64114 4.65533 4.73134 4.75174 4.83298 5.02383 5.07897 5.15071 5.17535 5.24527 5.32377 5.32608 5.38508 5.45056 5.49487 5.65327 5.66842 5.69031 5.86857 5.87928 5.88970 5.94888 6.05297 6.18894 6.31882 6.34316 6.42377 6.52175 6.60196 6.73679 6.84599 7.04561 7.26617 7.90619 7.92823 8.26317 8.45695 8.85118 9.56568 9.95794 11.00311 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002084 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.781438 B =13429.842319 C =14359.467706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.290 5.290 5 C 0.172 3.828 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.522 3.478 11 O -0.540 6.540 12 N -0.717 5.717 13 C 0.117 3.883 14 C -0.145 4.145 15 C 0.144 3.856 16 N -0.571 5.571 17 C -0.272 4.272 18 H 0.080 0.920 19 C 0.041 3.959 20 N -0.894 5.894 21 Si 0.873 3.127 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.267 1.267 25 C 0.121 3.879 26 C -0.195 4.195 27 C -0.220 4.220 28 C -0.118 4.118 29 C -0.031 4.031 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 16.539 9.744 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.141 5.141 4 N -0.130 5.130 5 C -0.096 4.096 6 N -0.161 5.161 7 C 0.001 3.999 8 C -0.147 4.147 9 H 0.131 0.869 10 C 0.306 3.694 11 O -0.418 6.418 12 N -0.368 5.368 13 C -0.007 4.007 14 C -0.186 4.186 15 C 0.018 3.982 16 N -0.289 5.289 17 C -0.400 4.400 18 H 0.098 0.902 19 C -0.160 4.160 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.192 1.192 25 C 0.013 3.987 26 C -0.234 4.234 27 C -0.260 4.260 28 C -0.157 4.157 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.124 0.876 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.378 17.638 9.884 20.499 hybrid contribution -0.815 -1.664 0.066 1.854 sum -4.193 15.974 9.950 19.281 Atomic orbital electron populations 1.20235 0.83635 1.04635 1.04179 1.24685 0.97143 0.82698 1.04244 1.74490 0.96113 1.23662 1.19877 1.74044 1.12320 1.08033 1.18564 1.24711 0.87059 0.92608 1.05180 1.46001 1.07016 1.08474 1.54565 1.21761 0.97641 0.75239 1.05249 1.21642 0.96358 0.93072 1.03579 0.86922 1.19990 0.84397 0.86908 0.78117 1.90742 1.24215 1.81963 1.44855 1.46077 1.18205 1.07418 1.65057 1.21546 0.99721 0.78143 1.01262 1.22400 0.95729 0.97517 1.02925 1.21039 0.90897 0.88638 0.97628 1.43670 1.20480 1.56937 1.07795 1.18621 0.96412 1.38779 0.86220 0.90211 1.25467 0.98129 0.97380 0.95042 1.69866 1.29904 1.47006 1.06599 0.86986 0.83179 0.78481 0.81075 1.21179 1.22748 1.19175 1.21099 0.85023 1.00437 0.92179 1.23138 1.05465 0.91461 1.03319 1.23344 1.01665 0.98640 1.02373 1.21764 0.96812 0.96574 1.00543 1.20237 0.91218 0.90826 1.04807 0.89486 0.88609 0.90284 0.87852 0.87865 0.76259 0.91356 0.91592 0.91846 0.90458 0.92470 0.93868 0.92521 0.89134 0.90574 0.87878 0.89339 0.90775 0.90106 0.88684 0.87580 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.05 16 2 C 0.18 1.86 8.07 -155.45 -1.25 0.61 16 3 N -0.30 -4.09 12.23 32.70 0.40 -3.69 16 4 N -0.29 -3.94 12.21 32.75 0.40 -3.54 16 5 C 0.17 1.77 7.75 -155.31 -1.20 0.57 16 6 N -0.47 -4.43 3.11 -110.87 -0.35 -4.77 16 7 C 0.12 0.96 5.48 -4.01 -0.02 0.94 16 8 C -0.12 -0.88 2.54 -91.53 -0.23 -1.12 16 9 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 10 C 0.52 5.41 7.15 -10.99 -0.08 5.33 16 11 O -0.54 -7.62 15.83 5.55 0.09 -7.53 16 12 N -0.72 -7.31 5.38 -60.29 -0.32 -7.64 16 13 C 0.12 1.55 5.67 -4.04 -0.02 1.52 16 14 C -0.15 -2.21 5.65 -26.74 -0.15 -2.36 16 15 C 0.14 2.73 4.56 -4.04 -0.02 2.71 16 16 N -0.57 -12.24 2.42 -165.67 -0.40 -12.64 16 17 C -0.27 -6.96 8.46 -15.06 -0.13 -7.09 16 18 H 0.08 2.24 7.38 -52.49 -0.39 1.85 16 19 C 0.04 1.11 5.28 -17.43 -0.09 1.02 16 20 N -0.89 -25.74 13.97 55.49 0.78 -24.97 16 21 Si 0.87 20.93 25.14 -169.99 -4.27 16.66 16 22 H -0.28 -6.57 6.67 56.52 0.38 -6.19 16 23 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 2.25 6.61 -67.93 -0.45 1.80 16 26 C -0.20 -3.53 9.82 -26.70 -0.26 -3.79 16 27 C -0.22 -3.74 10.09 -26.70 -0.27 -4.01 16 28 C -0.12 -0.66 5.23 -26.39 -0.14 -0.80 16 29 C -0.03 -0.20 6.34 -27.57 -0.17 -0.37 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.37 7.75 -51.93 -0.40 -0.03 16 33 H 0.10 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 35 H 0.40 3.12 7.81 -40.82 -0.32 2.80 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.22 3.44 -51.93 -0.18 1.04 16 41 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 43 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.10 2.14 6.97 -51.93 -0.36 1.78 16 46 H 0.09 1.67 7.98 -51.92 -0.41 1.25 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 49 H 0.09 0.38 7.32 -51.93 -0.38 0.00 16 50 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -33.96 406.54 -10.00 -43.96 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.32 Total: 3.14 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -4.12 Total: -5.09 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.50 Total: -57.26 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.27 Total: 16.66 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.96 -10.00 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.321 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds