Wall clock time and date at job start Wed Apr 1 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46062 * 2 1 4 4 N 1.28907 * 109.73845 * 179.97438 * 3 2 1 5 5 C 1.29834 * 109.48104 * 359.97163 * 4 3 2 6 6 N 1.34693 * 126.46578 * 179.97438 * 2 1 3 7 7 C 1.46245 * 128.85544 * 0.14047 * 6 2 1 8 8 C 1.53320 * 108.73009 * 162.85725 * 7 6 2 9 9 H 1.09001 * 109.45243 * 290.30501 * 8 7 6 10 10 C 1.50701 * 109.44998 * 170.35593 * 8 7 6 11 11 O 1.21285 * 120.00349 * 359.95600 * 10 8 7 12 12 N 1.34776 * 119.99851 * 179.97438 * 10 8 7 13 13 C 1.46504 * 120.00217 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47284 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47074 * 180.02562 * 14 13 12 16 16 N 1.46508 * 109.47281 * 179.97438 * 15 14 13 17 17 C 1.36933 * 119.99711 * 269.99993 * 16 15 14 18 18 H 1.08001 * 119.99807 * 141.58962 * 17 16 15 19 19 C 1.38807 * 120.00411 * 321.58526 * 17 16 15 20 20 N 1.31614 * 120.00489 * 156.95365 * 19 17 16 21 21 Si 1.86808 * 119.99722 * 336.95643 * 19 17 16 22 22 H 1.48505 * 109.46702 * 95.45185 * 21 19 17 23 23 H 1.48501 * 109.47228 * 215.45043 * 21 19 17 24 24 H 1.48493 * 109.47302 * 335.45313 * 21 19 17 25 25 C 1.46498 * 119.99701 * 89.99474 * 16 15 14 26 26 C 1.52999 * 117.49446 * 165.72217 * 25 16 15 27 27 C 1.52996 * 117.50091 * 234.37964 * 25 16 15 28 28 C 1.53138 * 109.56519 * 50.33526 * 8 7 6 29 29 C 1.50795 * 128.52373 * 180.09941 * 5 4 3 30 30 H 1.08998 * 109.47329 * 270.02902 * 1 2 3 31 31 H 1.08999 * 109.47510 * 30.03261 * 1 2 3 32 32 H 1.09001 * 109.46998 * 150.03306 * 1 2 3 33 33 H 1.09007 * 109.57393 * 43.09566 * 7 6 2 34 34 H 1.08997 * 109.61734 * 282.64480 * 7 6 2 35 35 H 0.97008 * 119.99846 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.46894 * 59.99950 * 13 12 10 37 37 H 1.09000 * 109.46924 * 300.00024 * 13 12 10 38 38 H 1.09003 * 109.46904 * 59.99812 * 14 13 12 39 39 H 1.09000 * 109.46916 * 300.00370 * 14 13 12 40 40 H 1.09003 * 109.47573 * 60.00021 * 15 14 13 41 41 H 1.09000 * 109.47387 * 299.99880 * 15 14 13 42 42 H 0.97001 * 120.00307 * 179.97438 * 20 19 17 43 43 H 1.09001 * 115.55073 * 20.05831 * 25 16 15 44 44 H 1.09003 * 117.49890 * 215.00472 * 26 25 16 45 45 H 1.09002 * 117.50028 * 0.02562 * 26 25 16 46 46 H 1.09009 * 117.49488 * 359.97438 * 27 25 16 47 47 H 1.08999 * 117.50123 * 144.97600 * 27 25 16 48 48 H 1.08998 * 109.49923 * 50.50416 * 28 8 7 49 49 H 1.08998 * 109.49975 * 170.57995 * 28 8 7 50 50 H 1.08996 * 109.73509 * 44.44842 * 29 5 4 51 51 H 1.09002 * 109.77153 * 283.78731 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9370 -2.4979 -0.0017 8 6 3.1553 -3.3254 -0.4281 9 1 3.3622 -3.1493 -1.4837 10 6 2.8692 -4.7888 -0.2101 11 8 1.7988 -5.1368 0.2418 12 7 3.8029 -5.7110 -0.5171 13 6 3.5251 -7.1337 -0.3047 14 6 4.7405 -7.9598 -0.7302 15 6 4.4501 -9.4455 -0.5090 16 7 5.6137 -10.2367 -0.9170 17 6 5.7191 -10.6843 -2.2068 18 1 6.6804 -10.6919 -2.6989 19 6 4.5904 -11.1284 -2.8818 20 7 4.5674 -11.1272 -4.1977 21 14 3.1038 -11.7277 -1.9223 22 1 2.1306 -10.6160 -1.7722 23 1 2.4633 -12.8510 -2.6525 24 1 3.5356 -12.1923 -0.5796 25 6 6.6645 -10.5487 0.0549 26 6 7.6714 -11.6384 -0.3188 27 6 8.1007 -10.1692 -0.3112 28 6 4.3720 -2.9139 0.4058 29 6 4.8052 -1.4968 0.0045 30 1 -0.3634 0.0005 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5133 33 1 1.1203 -2.6605 -0.7052 34 1 1.6249 -2.7960 0.9992 35 1 4.6590 -5.4327 -0.8786 36 1 2.6596 -7.4274 -0.8986 37 1 3.3180 -7.3098 0.7509 38 1 5.6057 -7.6658 -0.1359 39 1 4.9480 -7.7837 -1.7857 40 1 3.5850 -9.7392 -1.1036 41 1 4.2423 -9.6219 0.5464 42 1 3.7788 -11.4379 -4.6694 43 1 6.3744 -10.4694 1.1026 44 1 8.0438 -12.2760 0.4830 45 1 7.5522 -12.1228 -1.2880 46 1 8.2638 -9.6877 -1.2754 47 1 8.7555 -9.8397 0.4956 48 1 4.1101 -2.9295 1.4638 49 1 5.1905 -3.6101 0.2232 50 1 5.5305 -1.1172 0.7241 51 1 5.2492 -1.5146 -0.9908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752293049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:12 Heat of formation + Delta-G solvation = 60.093047 kcal Electronic energy + Delta-G solvation = -30278.470681 eV Core-core repulsion = 26214.522482 eV Total energy + Delta-G solvation = -4063.948199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.39214 -41.16416 -39.07474 -37.94337 -36.73007 -35.36906 -35.08029 -33.77055 -32.73495 -31.59633 -31.12612 -28.35918 -27.37786 -26.09796 -25.04410 -24.21534 -22.95315 -22.73523 -22.43177 -21.67134 -21.50339 -20.50556 -18.64920 -18.40586 -17.69729 -17.42504 -17.28389 -17.07856 -16.66926 -16.61697 -16.06418 -15.66537 -15.30719 -15.15456 -14.97794 -14.80761 -14.72089 -14.58156 -14.16236 -13.98385 -13.80544 -13.62784 -13.49501 -13.23084 -13.21111 -12.73320 -12.67652 -12.62081 -12.46318 -12.36300 -12.25292 -12.13878 -12.07724 -11.91146 -11.47297 -11.39873 -11.33031 -11.17781 -10.97182 -10.87186 -10.55981 -10.13616 -10.04889 -8.57340 -8.20971 -5.58290 0.77396 1.29645 1.33245 1.42409 1.48697 1.51980 1.75192 2.10688 2.40759 3.00091 3.03873 3.19799 3.23665 3.37620 3.42865 3.51581 3.55976 3.90163 3.98625 4.07230 4.10432 4.19978 4.23066 4.30015 4.32502 4.40071 4.43814 4.52916 4.55472 4.59864 4.61472 4.63765 4.75618 4.82137 4.83335 4.87332 4.94592 4.98929 4.99626 5.02720 5.05745 5.21053 5.27237 5.31458 5.38924 5.48609 5.58492 5.85589 5.94502 6.20652 6.46669 7.01171 7.12864 7.65332 7.65405 8.04713 8.98379 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002084 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.781438 B =13429.842319 C =14359.467706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.114 4.114 9 H 0.129 0.871 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.709 5.709 13 C 0.128 3.872 14 C -0.126 4.126 15 C 0.134 3.866 16 N -0.585 5.585 17 C -0.245 4.245 18 H 0.041 0.959 19 C -0.015 4.015 20 N -0.946 5.946 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.314 1.314 24 H -0.257 1.257 25 C 0.108 3.892 26 C -0.203 4.203 27 C -0.200 4.200 28 C -0.111 4.111 29 C -0.028 4.028 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.417 0.583 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.262 0.738 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 16.882 12.348 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.002 3.998 8 C -0.135 4.135 9 H 0.146 0.854 10 C 0.312 3.688 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.003 3.997 14 C -0.166 4.166 15 C 0.009 3.991 16 N -0.304 5.304 17 C -0.375 4.375 18 H 0.059 0.941 19 C -0.212 4.212 20 N -0.589 5.589 21 Si 0.763 3.237 22 H -0.200 1.200 23 H -0.244 1.244 24 H -0.181 1.181 25 C 0.000 4.000 26 C -0.242 4.242 27 C -0.240 4.240 28 C -0.149 4.149 29 C -0.067 4.067 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.096 0.904 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.929 18.017 12.528 22.139 hybrid contribution -0.842 -1.761 -0.716 2.079 sum -3.771 16.256 11.812 20.445 Atomic orbital electron populations 1.20425 0.81062 1.05759 1.05355 1.25369 0.98582 0.82357 1.02613 1.74388 0.96727 1.25510 1.22054 1.73937 1.12775 1.09987 1.20752 1.25424 0.88478 0.92267 1.03343 1.46113 1.06734 1.08866 1.54309 1.21835 0.98243 0.74327 1.05406 1.21577 0.96763 0.90351 1.04852 0.85351 1.20409 0.83522 0.87960 0.76919 1.90734 1.25783 1.82734 1.46546 1.45903 1.19009 1.06203 1.64958 1.21229 0.97724 0.79563 1.01179 1.22093 0.97343 0.95514 1.01691 1.21174 0.88923 0.90348 0.98646 1.43776 1.21909 1.57807 1.06900 1.18405 0.94544 1.36671 0.87884 0.94088 1.26008 1.01060 0.98549 0.95547 1.69988 1.30856 1.49836 1.08254 0.86003 0.80414 0.77574 0.79741 1.19982 1.24358 1.18114 1.21463 0.84614 1.00844 0.93037 1.23138 1.06201 0.92383 1.02483 1.23292 1.01148 0.97358 1.02244 1.21765 0.96679 0.96513 0.99942 1.20445 0.89808 0.90251 1.06245 0.88171 0.88081 0.88526 0.87150 0.88122 0.74575 0.93674 0.90711 0.89630 0.93065 0.95100 0.90955 0.92926 0.85535 0.87422 0.91702 0.91945 0.86989 0.90433 0.86320 0.86422 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.29 71.24 0.73 -0.01 16 2 C 0.18 3.60 8.07 138.14 1.11 4.71 16 3 N -0.35 -9.54 12.23 -50.46 -0.62 -10.15 16 4 N -0.34 -9.13 12.21 -50.28 -0.61 -9.74 16 5 C 0.17 3.36 7.75 138.14 1.07 4.43 16 6 N -0.47 -8.21 3.11 -504.69 -1.57 -9.78 16 7 C 0.12 1.67 5.48 86.53 0.47 2.14 16 8 C -0.11 -1.29 2.54 -11.39 -0.03 -1.32 16 9 H 0.13 1.14 8.12 -2.39 -0.02 1.12 16 10 C 0.53 9.57 7.15 87.66 0.63 10.20 16 11 O -0.58 -15.26 15.83 -3.04 -0.05 -15.31 16 12 N -0.71 -12.44 5.38 -463.05 -2.49 -14.93 16 13 C 0.13 3.08 5.67 86.38 0.49 3.57 16 14 C -0.13 -3.55 5.65 30.59 0.17 -3.37 16 15 C 0.13 4.77 4.56 86.37 0.39 5.16 16 16 N -0.58 -24.25 2.42 -678.05 -1.64 -25.89 16 17 C -0.25 -12.78 8.46 84.03 0.71 -12.07 16 18 H 0.04 2.43 7.38 -2.91 -0.02 2.41 16 19 C -0.01 -0.82 5.28 84.86 0.45 -0.37 16 20 N -0.95 -56.66 13.97 21.65 0.30 -56.35 16 21 Si 0.93 43.86 25.14 68.60 1.72 45.59 16 22 H -0.27 -12.15 6.67 99.48 0.66 -11.49 16 23 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 C 0.11 3.67 6.61 44.99 0.30 3.96 16 26 C -0.20 -6.98 9.82 30.62 0.30 -6.68 16 27 C -0.20 -6.28 10.09 30.62 0.31 -5.97 16 28 C -0.11 -0.86 5.23 30.81 0.16 -0.70 16 29 C -0.03 -0.28 6.34 30.05 0.19 -0.09 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.10 0.71 7.75 -2.39 -0.02 0.69 16 33 H 0.11 1.34 7.85 -2.38 -0.02 1.32 16 34 H 0.10 1.44 7.79 -2.39 -0.02 1.43 16 35 H 0.42 4.99 7.81 -92.70 -0.72 4.27 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.27 3.44 -2.39 -0.01 1.26 16 41 H 0.07 2.15 8.04 -2.39 -0.02 2.14 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.13 3.46 8.10 -2.39 -0.02 3.44 16 44 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.06 2.73 6.97 -2.39 -0.02 2.72 16 46 H 0.06 2.30 7.98 -2.38 -0.02 2.28 16 47 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 49 H 0.12 0.41 7.32 -2.39 -0.02 0.39 16 50 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -78.37 406.54 2.68 -75.69 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.17 Total: 17.29 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.46 Total: 3.60 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -6.63 Total: -126.85 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.05 Total: -15.31 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.72 Total: 45.59 kcal Total: -78.37 2.68 -75.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.780 kcal (2) G-P(sol) polarization free energy of solvation -78.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds