Wall clock time and date at job start Wed Apr 1 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30834 * 126.46490 * 2 1 4 4 N 1.28910 * 109.74026 * 179.89635 * 3 2 1 5 5 C 1.29827 * 109.47747 * 0.43823 * 4 3 2 6 6 N 1.34695 * 126.46434 * 180.31699 * 2 1 3 7 7 C 1.46259 * 128.84686 * 359.84839 * 6 2 1 8 8 C 1.53319 * 108.72971 * 197.09462 * 7 6 2 9 9 H 1.08995 * 109.45125 * 69.71818 * 8 7 6 10 10 C 1.50699 * 109.45363 * 189.67567 * 8 7 6 11 11 O 1.21280 * 119.99749 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99858 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99549 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.46888 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47253 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47447 * 179.97438 * 15 14 13 17 17 C 1.36937 * 119.99958 * 270.00341 * 16 15 14 18 18 H 1.07997 * 120.00534 * 140.53364 * 17 16 15 19 19 C 1.38815 * 119.99597 * 320.52727 * 17 16 15 20 20 N 1.31618 * 120.00280 * 340.28807 * 19 17 16 21 21 Si 1.86801 * 119.99780 * 160.28861 * 19 17 16 22 22 H 1.48498 * 109.47376 * 60.00315 * 21 19 17 23 23 H 1.48506 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47269 * 300.00116 * 21 19 17 25 25 C 1.46493 * 120.00258 * 89.99725 * 16 15 14 26 26 C 1.52997 * 117.50218 * 183.29240 * 25 16 15 27 27 C 1.52993 * 117.50148 * 114.66824 * 25 16 15 28 28 C 1.53147 * 109.57707 * 309.71045 * 8 7 6 29 29 C 1.50806 * 128.52385 * 179.62344 * 5 4 3 30 30 H 1.09000 * 109.47104 * 269.68181 * 1 2 3 31 31 H 1.09001 * 109.47433 * 149.68780 * 1 2 3 32 32 H 1.08998 * 109.47900 * 29.68136 * 1 2 3 33 33 H 1.09002 * 109.59341 * 316.86722 * 7 6 2 34 34 H 1.09001 * 109.59424 * 77.16545 * 7 6 2 35 35 H 0.96993 * 120.00192 * 359.97438 * 12 10 8 36 36 H 1.09007 * 109.47136 * 299.99675 * 13 12 10 37 37 H 1.08997 * 109.47267 * 60.00101 * 13 12 10 38 38 H 1.08999 * 109.47106 * 299.99851 * 14 13 12 39 39 H 1.09003 * 109.47069 * 59.99496 * 14 13 12 40 40 H 1.09007 * 109.47044 * 299.99659 * 15 14 13 41 41 H 1.09003 * 109.47405 * 59.99811 * 15 14 13 42 42 H 0.97004 * 120.00210 * 175.00891 * 20 19 17 43 43 H 1.09010 * 115.54917 * 328.99887 * 25 16 15 44 44 H 1.09004 * 117.49611 * 359.97438 * 26 25 16 45 45 H 1.08999 * 117.50506 * 145.02056 * 26 25 16 46 46 H 1.09006 * 117.50270 * 214.97953 * 27 25 16 47 47 H 1.09000 * 117.49879 * 359.97438 * 27 25 16 48 48 H 1.09001 * 109.49101 * 189.38390 * 28 8 7 49 49 H 1.08999 * 109.50007 * 309.44457 * 28 8 7 50 50 H 1.09000 * 109.73255 * 76.27013 * 29 5 4 51 51 H 1.09007 * 109.76706 * 315.60849 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 0.0022 5 6 3.5815 -0.6155 -0.0057 6 7 2.3075 -1.0832 -0.0060 7 6 1.9366 -2.4980 -0.0108 8 6 3.1552 -3.3278 0.4101 9 1 3.3629 -3.1576 1.4665 10 6 2.8690 -4.7900 0.1842 11 8 1.7982 -5.1354 -0.2686 12 7 3.8034 -5.7138 0.4843 13 6 3.5253 -7.1352 0.2641 14 6 4.7411 -7.9637 0.6842 15 6 4.4505 -9.4482 0.4549 16 7 5.6148 -10.2415 0.8565 17 6 6.5957 -10.5278 -0.0551 18 1 7.6333 -10.5071 0.2436 19 6 6.2562 -10.8449 -1.3632 20 7 5.0364 -11.2496 -1.6470 21 14 7.5308 -10.6973 -2.7209 22 1 8.6786 -11.5907 -2.4216 23 1 6.9215 -11.0908 -4.0168 24 1 8.0053 -9.2926 -2.8038 25 6 5.7299 -10.7284 2.2334 26 6 7.0049 -11.4851 2.6110 27 6 5.6844 -12.2417 2.4537 28 6 4.3717 -2.9116 -0.4219 29 6 4.8051 -1.4970 -0.0145 30 1 -0.3633 -0.0057 1.0276 31 1 -0.3634 -0.8872 -0.5187 32 1 -0.3635 0.8928 -0.5088 33 1 1.1205 -2.6644 0.6924 34 1 1.6211 -2.7898 -1.0125 35 1 4.6601 -5.4375 0.8454 36 1 2.6608 -7.4326 0.8578 37 1 3.3166 -7.3053 -0.7921 38 1 5.6058 -7.6665 0.0910 39 1 4.9493 -7.7935 1.7405 40 1 3.5858 -9.7451 1.0485 41 1 4.2420 -9.6187 -0.6013 42 1 4.7781 -11.4016 -2.5696 43 1 5.2758 -10.0949 2.9955 44 1 7.7580 -11.6210 1.8347 45 1 7.3900 -11.3496 3.6216 46 1 5.2008 -12.6039 3.3610 47 1 5.5685 -12.8751 1.5743 48 1 5.1904 -3.6087 -0.2431 49 1 4.1096 -2.9220 -1.4799 50 1 5.2489 -1.5204 0.9808 51 1 5.5306 -1.1135 -0.7320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752293050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:18 Heat of formation + Delta-G solvation = 75.006610 kcal Electronic energy + Delta-G solvation = -30168.142709 eV Core-core repulsion = 26104.841211 eV Total energy + Delta-G solvation = -4063.301498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.61415 -40.26454 -37.34992 -37.05600 -35.51261 -34.49299 -33.65367 -32.19980 -31.49712 -30.82600 -29.44924 -27.67744 -26.06124 -24.87159 -23.76288 -23.22468 -21.71248 -21.49525 -21.14502 -20.72953 -19.87489 -19.60599 -17.79235 -16.95877 -16.58252 -16.40004 -15.99243 -15.74254 -15.50593 -15.17207 -14.82456 -14.65665 -14.48867 -14.26177 -13.99194 -13.86043 -13.55299 -13.42016 -13.03182 -12.72950 -12.66193 -12.54567 -12.30604 -12.02292 -11.87436 -11.71053 -11.60474 -11.49443 -11.10546 -10.91187 -10.83978 -10.73916 -10.59287 -10.42602 -10.30033 -10.23779 -9.96184 -9.72844 -9.64528 -9.32373 -9.25243 -9.10255 -8.55746 -6.61769 -5.87352 -3.54750 1.50655 2.05378 2.34325 2.58544 2.99441 3.27651 3.34884 3.35556 3.66189 3.87547 4.04267 4.09003 4.17709 4.35456 4.50166 4.58932 4.70111 4.77280 4.87737 4.88631 5.03332 5.06856 5.09636 5.18611 5.24127 5.29025 5.33301 5.48284 5.49437 5.53000 5.60880 5.67114 5.84895 5.86619 5.90103 6.04959 6.17907 6.19879 6.25744 6.44428 6.53282 6.54242 6.55957 6.62898 6.96100 7.00585 7.18875 7.34190 7.51764 7.70749 7.99133 8.40817 8.47326 9.06420 9.67119 10.25871 11.07435 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.002000 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.818170 B =13999.525870 C =14489.650379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.520 3.480 11 O -0.540 6.540 12 N -0.718 5.718 13 C 0.120 3.880 14 C -0.146 4.146 15 C 0.155 3.845 16 N -0.551 5.551 17 C -0.262 4.262 18 H 0.063 0.937 19 C 0.016 3.984 20 N -0.882 5.882 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.196 4.196 27 C -0.221 4.221 28 C -0.120 4.120 29 C -0.031 4.031 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.029 0.971 41 H 0.095 0.905 42 H 0.256 0.744 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 16.590 5.481 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.095 4.095 6 N -0.161 5.161 7 C 0.001 3.999 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.304 3.696 11 O -0.417 6.417 12 N -0.368 5.368 13 C -0.003 4.003 14 C -0.187 4.187 15 C 0.028 3.972 16 N -0.267 5.267 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.185 4.185 20 N -0.523 5.523 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.208 1.208 25 C 0.011 3.989 26 C -0.234 4.234 27 C -0.262 4.262 28 C -0.158 4.158 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.117 0.883 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.851 17.639 4.968 19.237 hybrid contribution 0.653 -1.306 -0.505 1.545 sum -5.198 16.333 4.464 17.712 Atomic orbital electron populations 1.20233 0.83643 1.04719 1.04120 1.24684 0.97138 0.82705 1.04285 1.74487 0.96124 1.23686 1.19874 1.74043 1.12315 1.08047 1.18613 1.24718 0.87080 0.92599 1.05100 1.46012 1.07005 1.08495 1.54547 1.21765 0.97633 0.75192 1.05326 1.21631 0.96312 0.93218 1.03379 0.87100 1.19978 0.84519 0.86828 0.78235 1.90743 1.24300 1.81987 1.44683 1.46143 1.17916 1.07737 1.65024 1.21536 0.99382 0.77628 1.01784 1.22478 0.96279 0.99495 1.00424 1.20750 0.88039 0.85454 1.02990 1.43325 1.22692 1.56138 1.04575 1.18970 0.87688 1.42362 0.90186 0.91935 1.25257 0.96550 0.97322 0.99411 1.70045 1.19031 1.44703 1.18521 0.86497 0.81366 0.78222 0.81444 1.20607 1.21538 1.20807 1.21234 0.98764 0.90074 0.88828 1.23016 0.92662 1.07284 1.00437 1.23346 1.01318 1.00063 1.01513 1.21767 0.96871 0.96515 1.00687 1.20232 0.91217 0.90905 1.04709 0.89532 0.90213 0.88610 0.87878 0.87842 0.76485 0.91706 0.91208 0.91429 0.93062 0.95285 0.88683 0.93392 0.89724 0.88502 0.90860 0.91313 0.88984 0.88636 0.90030 0.88273 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.28 36.00 0.37 -0.05 16 2 C 0.18 1.87 8.07 -155.45 -1.25 0.62 16 3 N -0.30 -4.13 12.23 32.70 0.40 -3.73 16 4 N -0.29 -4.00 12.21 32.76 0.40 -3.60 16 5 C 0.17 1.82 7.75 -155.31 -1.20 0.61 16 6 N -0.47 -4.50 3.11 -110.86 -0.35 -4.85 16 7 C 0.12 0.98 5.46 -4.01 -0.02 0.96 16 8 C -0.12 -0.90 2.54 -91.53 -0.23 -1.13 16 9 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 10 C 0.52 5.55 7.15 -10.99 -0.08 5.47 16 11 O -0.54 -7.82 15.83 5.56 0.09 -7.73 16 12 N -0.72 -7.56 5.38 -60.29 -0.32 -7.88 16 13 C 0.12 1.67 5.67 -4.04 -0.02 1.64 16 14 C -0.15 -2.33 5.65 -26.73 -0.15 -2.48 16 15 C 0.15 3.18 5.33 -4.05 -0.02 3.16 16 16 N -0.55 -12.49 2.75 -165.67 -0.46 -12.95 16 17 C -0.26 -6.57 8.47 -15.06 -0.13 -6.70 16 18 H 0.06 1.58 6.74 -52.49 -0.35 1.23 16 19 C 0.02 0.41 4.98 -17.43 -0.09 0.32 16 20 N -0.88 -23.85 11.50 55.49 0.64 -23.21 16 21 Si 0.90 20.31 29.60 -169.99 -5.03 15.28 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.12 2.41 6.56 -67.94 -0.45 1.96 16 26 C -0.20 -3.68 9.80 -26.74 -0.26 -3.95 16 27 C -0.22 -4.37 10.36 -26.74 -0.28 -4.64 16 28 C -0.12 -0.75 5.22 -26.42 -0.14 -0.89 16 29 C -0.03 -0.21 6.34 -27.59 -0.17 -0.38 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.38 8.04 -51.93 -0.42 -0.03 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.88 7.80 -51.93 -0.40 0.47 16 35 H 0.40 3.20 7.80 -40.82 -0.32 2.88 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 41 H 0.10 2.26 5.59 -51.93 -0.29 1.97 16 42 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 43 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 44 H 0.10 2.00 6.46 -51.93 -0.34 1.67 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 48 H 0.10 0.47 7.32 -51.93 -0.38 0.09 16 49 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 50 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 411.79 15.07 6.21 6.21 Total: -1.00 -32.66 411.79 -10.95 -43.61 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.39 Total: 4.33 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.13 Total: -5.48 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.31 Total: -56.21 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.66 -10.95 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.617 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds