Wall clock time and date at job start Wed Apr 1 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30834 * 126.46490 * 2 1 4 4 N 1.28910 * 109.74026 * 179.89635 * 3 2 1 5 5 C 1.29827 * 109.47747 * 0.43823 * 4 3 2 6 6 N 1.34695 * 126.46434 * 180.31699 * 2 1 3 7 7 C 1.46259 * 128.84686 * 359.84839 * 6 2 1 8 8 C 1.53319 * 108.72971 * 197.09462 * 7 6 2 9 9 H 1.08995 * 109.45125 * 69.71818 * 8 7 6 10 10 C 1.50699 * 109.45363 * 189.67567 * 8 7 6 11 11 O 1.21280 * 119.99749 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99858 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99549 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.46888 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47253 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47447 * 179.97438 * 15 14 13 17 17 C 1.36937 * 119.99958 * 270.00341 * 16 15 14 18 18 H 1.07997 * 120.00534 * 140.53364 * 17 16 15 19 19 C 1.38815 * 119.99597 * 320.52727 * 17 16 15 20 20 N 1.31618 * 120.00280 * 340.28807 * 19 17 16 21 21 Si 1.86801 * 119.99780 * 160.28861 * 19 17 16 22 22 H 1.48498 * 109.47376 * 60.00315 * 21 19 17 23 23 H 1.48506 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47269 * 300.00116 * 21 19 17 25 25 C 1.46493 * 120.00258 * 89.99725 * 16 15 14 26 26 C 1.52997 * 117.50218 * 183.29240 * 25 16 15 27 27 C 1.52993 * 117.50148 * 114.66824 * 25 16 15 28 28 C 1.53147 * 109.57707 * 309.71045 * 8 7 6 29 29 C 1.50806 * 128.52385 * 179.62344 * 5 4 3 30 30 H 1.09000 * 109.47104 * 269.68181 * 1 2 3 31 31 H 1.09001 * 109.47433 * 149.68780 * 1 2 3 32 32 H 1.08998 * 109.47900 * 29.68136 * 1 2 3 33 33 H 1.09002 * 109.59341 * 316.86722 * 7 6 2 34 34 H 1.09001 * 109.59424 * 77.16545 * 7 6 2 35 35 H 0.96993 * 120.00192 * 359.97438 * 12 10 8 36 36 H 1.09007 * 109.47136 * 299.99675 * 13 12 10 37 37 H 1.08997 * 109.47267 * 60.00101 * 13 12 10 38 38 H 1.08999 * 109.47106 * 299.99851 * 14 13 12 39 39 H 1.09003 * 109.47069 * 59.99496 * 14 13 12 40 40 H 1.09007 * 109.47044 * 299.99659 * 15 14 13 41 41 H 1.09003 * 109.47405 * 59.99811 * 15 14 13 42 42 H 0.97004 * 120.00210 * 175.00891 * 20 19 17 43 43 H 1.09010 * 115.54917 * 328.99887 * 25 16 15 44 44 H 1.09004 * 117.49611 * 359.97438 * 26 25 16 45 45 H 1.08999 * 117.50506 * 145.02056 * 26 25 16 46 46 H 1.09006 * 117.50270 * 214.97953 * 27 25 16 47 47 H 1.09000 * 117.49879 * 359.97438 * 27 25 16 48 48 H 1.09001 * 109.49101 * 189.38390 * 28 8 7 49 49 H 1.08999 * 109.50007 * 309.44457 * 28 8 7 50 50 H 1.09000 * 109.73255 * 76.27013 * 29 5 4 51 51 H 1.09007 * 109.76706 * 315.60849 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6812 0.0022 5 6 3.5815 -0.6155 -0.0057 6 7 2.3075 -1.0832 -0.0060 7 6 1.9366 -2.4980 -0.0108 8 6 3.1552 -3.3278 0.4101 9 1 3.3629 -3.1576 1.4665 10 6 2.8690 -4.7900 0.1842 11 8 1.7982 -5.1354 -0.2686 12 7 3.8034 -5.7138 0.4843 13 6 3.5253 -7.1352 0.2641 14 6 4.7411 -7.9637 0.6842 15 6 4.4505 -9.4482 0.4549 16 7 5.6148 -10.2415 0.8565 17 6 6.5957 -10.5278 -0.0551 18 1 7.6333 -10.5071 0.2436 19 6 6.2562 -10.8449 -1.3632 20 7 5.0364 -11.2496 -1.6470 21 14 7.5308 -10.6973 -2.7209 22 1 8.6786 -11.5907 -2.4216 23 1 6.9215 -11.0908 -4.0168 24 1 8.0053 -9.2926 -2.8038 25 6 5.7299 -10.7284 2.2334 26 6 7.0049 -11.4851 2.6110 27 6 5.6844 -12.2417 2.4537 28 6 4.3717 -2.9116 -0.4219 29 6 4.8051 -1.4970 -0.0145 30 1 -0.3633 -0.0057 1.0276 31 1 -0.3634 -0.8872 -0.5187 32 1 -0.3635 0.8928 -0.5088 33 1 1.1205 -2.6644 0.6924 34 1 1.6211 -2.7898 -1.0125 35 1 4.6601 -5.4375 0.8454 36 1 2.6608 -7.4326 0.8578 37 1 3.3166 -7.3053 -0.7921 38 1 5.6058 -7.6665 0.0910 39 1 4.9493 -7.7935 1.7405 40 1 3.5858 -9.7451 1.0485 41 1 4.2420 -9.6187 -0.6013 42 1 4.7781 -11.4016 -2.5696 43 1 5.2758 -10.0949 2.9955 44 1 7.7580 -11.6210 1.8347 45 1 7.3900 -11.3496 3.6216 46 1 5.2008 -12.6039 3.3610 47 1 5.5685 -12.8751 1.5743 48 1 5.1904 -3.6087 -0.2431 49 1 4.1096 -2.9220 -1.4799 50 1 5.2489 -1.5204 0.9808 51 1 5.5306 -1.1135 -0.7320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752293050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:16 Heat of formation + Delta-G solvation = 56.285537 kcal Electronic energy + Delta-G solvation = -30168.954516 eV Core-core repulsion = 26104.841211 eV Total energy + Delta-G solvation = -4064.113305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.38722 -41.14098 -38.84703 -37.92963 -36.66881 -35.33998 -35.07123 -33.44852 -32.60155 -31.51506 -30.89147 -28.35022 -27.39742 -26.09939 -24.84590 -24.17760 -23.02166 -22.49907 -22.40715 -21.70967 -21.36326 -20.46816 -18.58903 -18.23645 -17.66569 -17.29622 -17.23652 -16.89795 -16.65951 -16.36857 -16.05936 -15.76851 -15.37390 -15.14510 -14.97401 -14.79275 -14.59532 -14.32390 -13.96963 -13.87357 -13.62587 -13.51513 -13.27516 -13.20223 -13.16827 -12.72896 -12.64401 -12.59475 -12.43842 -12.27626 -12.25832 -12.07365 -12.02401 -11.84244 -11.40468 -11.38084 -11.25928 -11.16723 -10.97033 -10.83670 -10.45722 -10.10749 -10.04355 -8.46956 -7.76381 -5.48757 0.77642 1.34226 1.46354 1.48696 1.50260 1.54447 1.75510 2.14010 2.50403 3.04145 3.17859 3.24059 3.37525 3.43396 3.52579 3.54228 3.58032 3.89545 3.98835 4.09591 4.22468 4.24087 4.30744 4.33304 4.35187 4.49471 4.54689 4.58807 4.61049 4.63747 4.65463 4.80063 4.81836 4.82589 4.94737 4.95804 4.97412 5.00217 5.02948 5.10348 5.16491 5.21785 5.39316 5.43107 5.51939 5.58186 5.70475 5.86056 5.86469 6.49095 6.50157 7.16218 7.19244 7.65693 7.87530 8.39229 9.12160 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.002000 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.818170 B =13999.525870 C =14489.650379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.110 4.110 9 H 0.136 0.864 10 C 0.524 3.476 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.134 3.866 14 C -0.123 4.123 15 C 0.153 3.847 16 N -0.568 5.568 17 C -0.257 4.257 18 H 0.059 0.941 19 C -0.033 4.033 20 N -0.914 5.914 21 Si 0.950 3.050 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.272 1.272 25 C 0.105 3.895 26 C -0.181 4.181 27 C -0.225 4.225 28 C -0.114 4.114 29 C -0.027 4.027 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.050 0.950 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.122 0.878 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 17.339 7.478 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.174 5.174 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.132 4.132 9 H 0.154 0.846 10 C 0.310 3.690 11 O -0.460 6.460 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.163 4.163 15 C 0.026 3.974 16 N -0.285 5.285 17 C -0.388 4.388 18 H 0.076 0.924 19 C -0.231 4.231 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.198 1.198 25 C -0.003 4.003 26 C -0.219 4.219 27 C -0.266 4.266 28 C -0.153 4.153 29 C -0.066 4.066 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.129 0.871 46 H 0.117 0.883 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.089 0.911 50 H 0.140 0.860 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.003 18.420 6.994 20.328 hybrid contribution 0.363 -1.598 -1.071 1.957 sum -4.640 16.822 5.923 18.428 Atomic orbital electron populations 1.20427 0.80999 1.05706 1.05479 1.25382 0.98599 0.82321 1.02561 1.74387 0.96709 1.25515 1.22064 1.73938 1.12798 1.09943 1.20753 1.25396 0.88471 0.92267 1.03376 1.46118 1.06710 1.08878 1.54308 1.21838 0.98377 0.74303 1.05342 1.21555 0.96396 0.90184 1.05035 0.84603 1.20452 0.83603 0.87989 0.76942 1.90738 1.26041 1.82812 1.46371 1.45908 1.18821 1.06253 1.64946 1.21133 0.98290 0.79461 1.00223 1.22090 0.96416 0.96310 1.01452 1.20679 0.87633 0.88270 1.00796 1.43552 1.22542 1.57043 1.05381 1.19129 0.88167 1.40753 0.90749 0.92360 1.25867 0.97895 0.97976 1.01315 1.70179 1.20673 1.46708 1.18197 0.85638 0.79319 0.78444 0.78823 1.20542 1.22453 1.19785 1.21573 1.00089 0.90503 0.88144 1.23015 0.91493 1.05716 1.01662 1.23266 1.02791 0.99364 1.01176 1.21765 0.96958 0.96733 0.99817 1.20419 0.89817 0.90041 1.06315 0.87868 0.88660 0.88148 0.86691 0.88630 0.74571 0.91943 0.93558 0.92478 0.90958 0.95239 0.92260 0.94126 0.86642 0.90875 0.87072 0.88271 0.93102 0.86543 0.91112 0.85994 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.28 71.23 0.73 0.00 16 2 C 0.18 3.63 8.07 138.14 1.11 4.74 16 3 N -0.35 -9.58 12.23 -50.47 -0.62 -10.19 16 4 N -0.34 -9.21 12.21 -50.28 -0.61 -9.83 16 5 C 0.17 3.43 7.75 138.14 1.07 4.50 16 6 N -0.47 -8.34 3.11 -504.66 -1.57 -9.91 16 7 C 0.12 1.71 5.46 86.53 0.47 2.19 16 8 C -0.11 -1.28 2.54 -11.38 -0.03 -1.31 16 9 H 0.14 1.00 8.12 -2.39 -0.02 0.99 16 10 C 0.52 10.03 7.15 87.66 0.63 10.66 16 11 O -0.58 -16.17 15.83 -3.03 -0.05 -16.22 16 12 N -0.71 -13.12 5.38 -463.05 -2.49 -15.61 16 13 C 0.13 3.55 5.67 86.38 0.49 4.04 16 14 C -0.12 -3.70 5.65 30.59 0.17 -3.53 16 15 C 0.15 6.27 5.33 86.38 0.46 6.73 16 16 N -0.57 -25.47 2.75 -678.05 -1.86 -27.33 16 17 C -0.26 -12.93 8.47 84.03 0.71 -12.22 16 18 H 0.06 2.94 6.74 -2.91 -0.02 2.92 16 19 C -0.03 -1.71 4.98 84.86 0.42 -1.28 16 20 N -0.91 -51.02 11.50 21.65 0.25 -50.77 16 21 Si 0.95 42.22 29.60 68.60 2.03 44.25 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.11 4.00 6.56 44.99 0.30 4.30 16 26 C -0.18 -6.39 9.80 30.59 0.30 -6.09 16 27 C -0.23 -8.58 10.36 30.59 0.32 -8.26 16 28 C -0.11 -1.09 5.22 30.80 0.16 -0.93 16 29 C -0.03 -0.28 6.34 30.04 0.19 -0.09 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.74 8.04 -2.39 -0.02 0.72 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.51 7.80 -2.39 -0.02 1.49 16 35 H 0.42 5.12 7.80 -92.71 -0.72 4.40 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.70 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.03 1.17 8.07 -2.38 -0.02 1.15 16 41 H 0.06 2.91 5.59 -2.39 -0.01 2.90 16 42 H 0.25 13.66 8.32 -92.71 -0.77 12.89 16 43 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 44 H 0.07 2.95 6.46 -2.38 -0.02 2.93 16 45 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 47 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.12 0.67 7.32 -2.39 -0.02 0.66 16 49 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 50 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -74.36 411.79 2.80 -71.56 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.21 Total: 20.62 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 7.51 Total: 3.43 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.91 Total: -123.64 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.05 Total: -16.22 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -74.36 2.80 -71.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752293050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.846 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds