Wall clock time and date at job start Wed Apr 1 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.45968 * 2 1 4 4 N 1.46494 * 109.47116 * 60.02720 * 3 2 1 5 5 C 1.34776 * 120.00207 * 179.97438 * 4 3 2 6 6 O 1.21597 * 119.99948 * 359.72513 * 5 4 3 7 7 C 1.47527 * 120.00343 * 180.02562 * 5 4 3 8 8 C 1.36594 * 125.77274 * 179.44466 * 7 5 4 9 9 N 1.34807 * 106.83846 * 179.83783 * 8 7 5 10 10 C 1.46509 * 126.59501 * 180.14838 * 9 8 7 11 11 C 1.53776 * 113.61003 * 14.42837 * 10 9 8 12 12 C 1.53962 * 87.01874 * 220.04938 * 11 10 9 13 13 C 1.53775 * 87.10808 * 25.36539 * 12 11 10 14 14 N 1.40207 * 106.81525 * 0.41662 * 9 8 7 15 15 N 1.28762 * 108.36346 * 359.72981 * 14 9 8 16 16 C 1.53040 * 109.45005 * 119.96699 * 2 1 3 17 17 C 1.53192 * 109.31529 * 58.64837 * 16 2 1 18 18 N 1.46931 * 108.77524 * 54.63235 * 17 16 2 19 19 C 1.36935 * 120.62941 * 126.41192 * 18 17 16 20 20 H 1.07994 * 120.00213 * 207.66532 * 19 18 17 21 21 C 1.38818 * 119.99550 * 27.66611 * 19 18 17 22 22 N 1.31618 * 120.00452 * 17.37080 * 21 19 18 23 23 Si 1.86798 * 119.99735 * 197.36267 * 21 19 18 24 24 H 1.48506 * 109.47203 * 90.00503 * 23 21 19 25 25 H 1.48502 * 109.47293 * 210.00241 * 23 21 19 26 26 H 1.48498 * 109.47566 * 330.00504 * 23 21 19 27 27 C 1.46925 * 118.74019 * 306.39584 * 18 17 16 28 28 C 1.53042 * 109.45925 * 240.02833 * 2 1 3 29 29 H 1.08999 * 109.47589 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47044 * 299.99446 * 1 2 3 32 32 H 1.09001 * 109.47049 * 300.02544 * 3 2 1 33 33 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 34 34 H 0.97010 * 120.00293 * 0.02562 * 4 3 2 35 35 H 1.08004 * 126.57585 * 359.95893 * 8 7 5 36 36 H 1.09001 * 112.84766 * 145.62510 * 10 9 8 37 37 H 1.09004 * 113.62104 * 334.56408 * 11 10 9 38 38 H 1.09002 * 113.61425 * 105.47399 * 11 10 9 39 39 H 1.08998 * 113.53506 * 270.81164 * 12 11 10 40 40 H 1.08994 * 113.74423 * 139.94714 * 12 11 10 41 41 H 1.09004 * 113.61125 * 220.09238 * 13 12 11 42 42 H 1.09002 * 113.61629 * 89.18962 * 13 12 11 43 43 H 1.09000 * 109.50264 * 178.60086 * 16 2 1 44 44 H 1.09006 * 109.49636 * 298.69663 * 16 2 1 45 45 H 1.09004 * 109.58548 * 294.84997 * 17 16 2 46 46 H 1.08998 * 109.58771 * 174.42180 * 17 16 2 47 47 H 0.96994 * 119.99986 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58574 * 293.81743 * 27 18 17 49 49 H 1.09000 * 109.70026 * 173.46134 * 27 18 17 50 50 H 1.08996 * 109.50037 * 61.31199 * 28 2 1 51 51 H 1.09004 * 109.49380 * 181.40827 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1964 5 6 1.8776 3.4231 1.4101 6 8 2.5807 4.0127 0.6122 7 6 1.3867 4.1181 2.6152 8 6 1.6521 5.4148 2.9530 9 7 1.0153 5.6533 4.1170 10 6 1.0071 6.9123 4.8661 11 6 1.5161 8.1152 4.0544 12 6 2.2337 8.5745 5.3368 13 6 2.2369 7.0991 5.7703 14 7 0.3672 4.4629 4.4761 15 7 0.6075 3.5808 3.5694 16 6 2.0396 -0.7208 1.2501 17 6 1.4991 -2.1541 1.2644 18 7 1.8620 -2.8090 0.0001 19 6 2.5254 -4.0069 0.0002 20 1 3.1670 -4.2689 -0.8280 21 6 2.3730 -4.8845 1.0649 22 7 1.3598 -4.7448 1.8932 23 14 3.6061 -6.2639 1.3220 24 1 4.7078 -5.7866 2.1959 25 1 2.9296 -7.4192 1.9648 26 1 4.1611 -6.6827 0.0099 27 6 1.4993 -2.1542 -1.2642 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6759 1.9565 -0.8898 33 1 3.1297 1.4428 -0.0005 34 1 0.9947 1.6612 1.8354 35 1 2.2548 6.1151 2.3937 36 1 0.0601 7.0970 5.3732 37 1 2.1962 7.8415 3.2478 38 1 0.7238 8.7903 3.7308 39 1 1.6222 9.2150 5.9722 40 1 3.2300 8.9800 5.1609 41 1 2.0256 6.9549 6.8299 42 1 3.1144 6.5469 5.4336 43 1 3.1293 -0.7431 1.2386 44 1 1.6955 -0.1934 2.1399 45 1 0.4141 -2.1345 1.3673 46 1 1.9375 -2.7018 2.0986 47 1 1.2532 -5.3582 2.6369 48 1 0.4144 -2.1346 -1.3674 49 1 1.9360 -2.7012 -2.0998 50 1 1.6960 -0.1936 -2.1398 51 1 3.1296 -0.7431 -1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754716387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:44 Heat of formation + Delta-G solvation = 98.047579 kcal Electronic energy + Delta-G solvation = -30661.104120 eV Core-core repulsion = 26598.801753 eV Total energy + Delta-G solvation = -4062.302367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.51853 -39.79926 -39.28304 -38.25824 -35.02398 -33.57049 -32.94919 -31.28003 -30.68074 -29.85426 -27.23609 -26.94064 -26.53653 -26.22305 -24.27123 -23.18280 -22.67544 -22.19827 -20.79335 -20.38083 -20.12841 -18.66848 -17.90645 -16.81868 -16.53795 -16.26955 -15.96396 -15.89802 -15.02418 -14.94747 -14.80639 -14.34081 -13.91121 -13.84125 -13.71086 -13.38418 -13.37529 -13.28248 -13.14385 -12.73957 -12.60436 -12.51584 -12.28716 -11.94176 -11.54577 -11.44282 -11.41610 -11.20372 -11.16332 -11.11808 -10.70916 -10.66410 -10.53063 -10.48832 -10.19354 -10.11800 -10.06377 -9.74775 -9.51334 -9.44509 -9.34444 -8.87405 -8.38900 -6.59616 -5.73219 -3.14622 0.89033 1.59033 1.70913 3.18852 3.28076 3.41635 3.48594 3.48763 3.49497 3.67391 3.97282 4.00258 4.01798 4.46298 4.54596 4.57943 4.77454 4.84697 4.90522 5.02831 5.12019 5.12402 5.19891 5.24302 5.24859 5.32373 5.46069 5.49329 5.58691 5.63605 5.84956 5.91476 6.01220 6.10176 6.17507 6.19100 6.22395 6.39222 6.49598 6.57844 6.63280 6.68828 6.77138 6.85607 6.95481 7.06503 7.44101 7.51834 7.74669 7.81087 7.85523 8.21915 8.51082 9.27569 9.91461 10.48186 11.35023 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002060 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.365198 B =13588.508395 C =14334.999352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C 0.130 3.870 4 N -0.704 5.704 5 C 0.601 3.399 6 O -0.547 6.547 7 C -0.098 4.098 8 C 0.090 3.910 9 N -0.352 5.352 10 C 0.121 3.879 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.146 4.146 14 N -0.064 5.064 15 N -0.203 5.203 16 C -0.131 4.131 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.146 3.854 28 C -0.119 4.119 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.201 0.799 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.022 0.978 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 28.432 5.161 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C 0.006 3.994 4 N -0.355 5.355 5 C 0.385 3.615 6 O -0.425 6.425 7 C -0.238 4.238 8 C -0.067 4.067 9 N -0.136 5.136 10 C 0.020 3.980 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.184 4.184 14 N -0.044 5.044 15 N -0.076 5.076 16 C -0.170 4.170 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.020 3.980 28 C -0.159 4.159 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.247 0.753 35 H 0.218 0.782 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.173 28.018 5.767 28.630 hybrid contribution 0.919 -0.325 -0.039 0.976 sum -0.254 27.693 5.728 28.280 Atomic orbital electron populations 1.21954 0.94658 1.03057 1.00388 1.20696 0.95844 0.91916 0.97963 1.21609 0.99110 0.92368 0.86264 1.45918 1.52578 1.11008 1.25970 1.16750 0.79869 0.81841 0.83082 1.90789 1.38670 1.66747 1.46253 1.21536 1.08166 0.93769 1.00294 1.23200 0.97144 0.97809 0.88509 1.50584 1.34322 1.12225 1.16498 1.23447 1.01791 0.78317 0.94456 1.23513 1.01251 0.95504 0.98317 1.22744 1.02131 0.95950 0.96523 1.23455 0.97148 0.97106 1.00728 1.82016 1.17216 0.86691 1.18451 1.74682 1.09946 1.23360 0.99632 1.22259 1.00593 0.99576 0.94585 1.20798 0.96573 0.87809 0.90279 1.44037 1.66792 1.21076 0.99492 1.19195 1.19181 0.93482 1.06091 0.91756 1.25022 0.97143 0.97558 1.00050 1.70030 1.27858 1.38848 1.17954 0.86309 0.81039 0.81600 0.77934 1.21542 1.21860 1.20505 1.20905 0.96420 0.90620 0.90104 1.21997 1.00735 0.98175 0.95004 0.93432 0.90703 0.93474 0.91665 0.91438 0.75268 0.78194 0.84784 0.88523 0.89276 0.88983 0.89699 0.89534 0.88923 0.92571 0.93452 0.96025 0.89648 0.93711 0.96159 0.92962 0.92938 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.54 37.16 0.28 -1.96 16 2 C -0.06 -1.03 0.53 -154.47 -0.08 -1.12 16 3 C 0.13 1.93 4.56 -4.05 -0.02 1.91 16 4 N -0.70 -10.19 4.94 -61.36 -0.30 -10.50 16 5 C 0.60 8.86 7.82 -12.47 -0.10 8.76 16 6 O -0.55 -9.10 16.86 5.28 0.09 -9.02 16 7 C -0.10 -1.28 6.99 -83.55 -0.58 -1.87 16 8 C 0.09 0.88 10.49 -16.84 -0.18 0.70 16 9 N -0.35 -3.20 3.83 -53.77 -0.21 -3.41 16 10 C 0.12 0.62 5.05 -67.12 -0.34 0.28 16 11 C -0.15 -0.43 7.47 -25.83 -0.19 -0.63 16 12 C -0.14 -0.30 8.09 -25.83 -0.21 -0.50 16 13 C -0.15 -0.59 7.88 -25.92 -0.20 -0.80 16 14 N -0.06 -0.82 13.78 60.35 0.83 0.02 16 15 N -0.20 -2.85 12.04 32.85 0.40 -2.46 16 16 C -0.13 -2.47 4.75 -26.61 -0.13 -2.60 16 17 C 0.17 4.03 4.84 -3.71 -0.02 4.01 16 18 N -0.59 -14.64 3.00 -172.32 -0.52 -15.16 16 19 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 20 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 22 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 23 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 3.01 6.04 -3.71 -0.02 2.99 16 28 C -0.12 -2.03 4.91 -26.61 -0.13 -2.16 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.35 4.98 -51.93 -0.26 1.09 16 31 H 0.05 0.69 6.86 -51.93 -0.36 0.33 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.41 5.88 5.84 -40.82 -0.24 5.64 16 35 H 0.20 1.35 6.79 -52.48 -0.36 0.99 16 36 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.28 6.39 -51.93 -0.33 -0.05 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.83 6.82 -51.93 -0.35 0.47 16 45 H 0.02 0.53 6.69 -51.93 -0.35 0.18 16 46 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.42 6.69 -51.93 -0.35 0.08 16 49 H 0.05 1.07 7.94 -51.93 -0.41 0.66 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -32.97 396.94 -8.22 -41.20 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.94 Total: 2.17 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.15 Total: -0.07 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.82 Total: -57.19 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.97 -8.22 -41.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.244 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds