Wall clock time and date at job start Wed Apr 1 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.45968 * 2 1 4 4 N 1.46494 * 109.47116 * 60.02720 * 3 2 1 5 5 C 1.34776 * 120.00207 * 179.97438 * 4 3 2 6 6 O 1.21597 * 119.99948 * 359.72513 * 5 4 3 7 7 C 1.47527 * 120.00343 * 180.02562 * 5 4 3 8 8 C 1.36594 * 125.77274 * 179.44466 * 7 5 4 9 9 N 1.34807 * 106.83846 * 179.83783 * 8 7 5 10 10 C 1.46509 * 126.59501 * 180.14838 * 9 8 7 11 11 C 1.53776 * 113.61003 * 14.42837 * 10 9 8 12 12 C 1.53962 * 87.01874 * 220.04938 * 11 10 9 13 13 C 1.53775 * 87.10808 * 25.36539 * 12 11 10 14 14 N 1.40207 * 106.81525 * 0.41662 * 9 8 7 15 15 N 1.28762 * 108.36346 * 359.72981 * 14 9 8 16 16 C 1.53040 * 109.45005 * 119.96699 * 2 1 3 17 17 C 1.53192 * 109.31529 * 58.64837 * 16 2 1 18 18 N 1.46931 * 108.77524 * 54.63235 * 17 16 2 19 19 C 1.36935 * 120.62941 * 126.41192 * 18 17 16 20 20 H 1.07994 * 120.00213 * 207.66532 * 19 18 17 21 21 C 1.38818 * 119.99550 * 27.66611 * 19 18 17 22 22 N 1.31618 * 120.00452 * 17.37080 * 21 19 18 23 23 Si 1.86798 * 119.99735 * 197.36267 * 21 19 18 24 24 H 1.48506 * 109.47203 * 90.00503 * 23 21 19 25 25 H 1.48502 * 109.47293 * 210.00241 * 23 21 19 26 26 H 1.48498 * 109.47566 * 330.00504 * 23 21 19 27 27 C 1.46925 * 118.74019 * 306.39584 * 18 17 16 28 28 C 1.53042 * 109.45925 * 240.02833 * 2 1 3 29 29 H 1.08999 * 109.47589 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47044 * 299.99446 * 1 2 3 32 32 H 1.09001 * 109.47049 * 300.02544 * 3 2 1 33 33 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 34 34 H 0.97010 * 120.00293 * 0.02562 * 4 3 2 35 35 H 1.08004 * 126.57585 * 359.95893 * 8 7 5 36 36 H 1.09001 * 112.84766 * 145.62510 * 10 9 8 37 37 H 1.09004 * 113.62104 * 334.56408 * 11 10 9 38 38 H 1.09002 * 113.61425 * 105.47399 * 11 10 9 39 39 H 1.08998 * 113.53506 * 270.81164 * 12 11 10 40 40 H 1.08994 * 113.74423 * 139.94714 * 12 11 10 41 41 H 1.09004 * 113.61125 * 220.09238 * 13 12 11 42 42 H 1.09002 * 113.61629 * 89.18962 * 13 12 11 43 43 H 1.09000 * 109.50264 * 178.60086 * 16 2 1 44 44 H 1.09006 * 109.49636 * 298.69663 * 16 2 1 45 45 H 1.09004 * 109.58548 * 294.84997 * 17 16 2 46 46 H 1.08998 * 109.58771 * 174.42180 * 17 16 2 47 47 H 0.96994 * 119.99986 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58574 * 293.81743 * 27 18 17 49 49 H 1.09000 * 109.70026 * 173.46134 * 27 18 17 50 50 H 1.08996 * 109.50037 * 61.31199 * 28 2 1 51 51 H 1.09004 * 109.49380 * 181.40827 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1964 5 6 1.8776 3.4231 1.4101 6 8 2.5807 4.0127 0.6122 7 6 1.3867 4.1181 2.6152 8 6 1.6521 5.4148 2.9530 9 7 1.0153 5.6533 4.1170 10 6 1.0071 6.9123 4.8661 11 6 1.5161 8.1152 4.0544 12 6 2.2337 8.5745 5.3368 13 6 2.2369 7.0991 5.7703 14 7 0.3672 4.4629 4.4761 15 7 0.6075 3.5808 3.5694 16 6 2.0396 -0.7208 1.2501 17 6 1.4991 -2.1541 1.2644 18 7 1.8620 -2.8090 0.0001 19 6 2.5254 -4.0069 0.0002 20 1 3.1670 -4.2689 -0.8280 21 6 2.3730 -4.8845 1.0649 22 7 1.3598 -4.7448 1.8932 23 14 3.6061 -6.2639 1.3220 24 1 4.7078 -5.7866 2.1959 25 1 2.9296 -7.4192 1.9648 26 1 4.1611 -6.6827 0.0099 27 6 1.4993 -2.1542 -1.2642 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6759 1.9565 -0.8898 33 1 3.1297 1.4428 -0.0005 34 1 0.9947 1.6612 1.8354 35 1 2.2548 6.1151 2.3937 36 1 0.0601 7.0970 5.3732 37 1 2.1962 7.8415 3.2478 38 1 0.7238 8.7903 3.7308 39 1 1.6222 9.2150 5.9722 40 1 3.2300 8.9800 5.1609 41 1 2.0256 6.9549 6.8299 42 1 3.1144 6.5469 5.4336 43 1 3.1293 -0.7431 1.2386 44 1 1.6955 -0.1934 2.1399 45 1 0.4141 -2.1345 1.3673 46 1 1.9375 -2.7018 2.0986 47 1 1.2532 -5.3582 2.6369 48 1 0.4144 -2.1346 -1.3674 49 1 1.9360 -2.7012 -2.0998 50 1 1.6960 -0.1936 -2.1398 51 1 3.1296 -0.7431 -1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754716387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:43 Heat of formation + Delta-G solvation = 76.841450 kcal Electronic energy + Delta-G solvation = -30662.023687 eV Core-core repulsion = 26598.801753 eV Total energy + Delta-G solvation = -4063.221934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.34344 -40.97052 -39.88862 -39.53053 -36.59731 -34.76802 -34.07888 -32.73645 -31.94335 -31.55757 -28.75111 -28.12069 -26.98696 -26.82258 -25.88134 -24.41663 -23.79533 -23.33730 -22.37030 -21.45488 -20.54761 -19.71911 -19.36898 -18.21402 -17.53145 -17.20255 -17.03801 -16.78383 -16.51554 -16.11639 -15.76504 -15.71267 -15.45292 -15.15148 -15.01139 -14.89856 -14.44294 -14.19803 -13.99835 -13.77050 -13.52036 -13.41517 -13.26721 -13.13110 -12.95213 -12.91011 -12.66570 -12.56553 -12.32153 -12.22539 -12.04461 -11.88124 -11.85380 -11.78101 -11.51469 -11.44422 -11.34176 -11.14221 -11.05147 -11.01475 -10.48033 -10.43220 -10.01254 -8.61816 -7.84247 -5.28077 0.10675 0.58614 1.05719 1.46170 1.47996 1.56307 2.13406 2.22132 2.52691 3.07068 3.16965 3.29099 3.37529 3.61851 3.73936 3.74153 3.75186 3.82376 3.88350 3.89034 3.97853 4.15213 4.42691 4.44928 4.55475 4.58914 4.63092 4.65172 4.74059 4.76334 4.81474 4.86492 4.87320 4.90455 4.93736 4.98121 5.05989 5.10763 5.15396 5.27729 5.28017 5.33682 5.40748 5.42920 5.51147 5.51179 5.58486 5.68957 5.86066 6.39852 6.42699 6.87246 7.10338 7.18689 7.91839 8.42674 9.21429 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002060 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.365198 B =13588.508395 C =14334.999352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.140 3.860 4 N -0.704 5.704 5 C 0.604 3.396 6 O -0.568 6.568 7 C -0.124 4.124 8 C 0.108 3.892 9 N -0.336 5.336 10 C 0.103 3.897 11 C -0.141 4.141 12 C -0.123 4.123 13 C -0.148 4.148 14 N -0.091 5.091 15 N -0.229 5.229 16 C -0.117 4.117 17 C 0.180 3.820 18 N -0.609 5.609 19 C -0.258 4.258 20 H 0.065 0.935 21 C -0.053 4.053 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.268 1.268 27 C 0.141 3.859 28 C -0.110 4.110 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.410 0.590 35 H 0.232 0.768 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.005 0.995 46 H 0.046 0.954 47 H 0.248 0.752 48 H 0.021 0.979 49 H 0.051 0.949 50 H 0.086 0.914 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 31.471 4.509 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 C 0.017 3.983 4 N -0.355 5.355 5 C 0.389 3.611 6 O -0.447 6.447 7 C -0.264 4.264 8 C -0.050 4.050 9 N -0.120 5.120 10 C 0.003 3.997 11 C -0.179 4.179 12 C -0.161 4.161 13 C -0.187 4.187 14 N -0.071 5.071 15 N -0.102 5.102 16 C -0.156 4.156 17 C 0.054 3.946 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.083 0.917 21 C -0.249 4.249 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.193 1.193 27 C 0.016 3.984 28 C -0.149 4.149 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.573 31.084 5.118 31.508 hybrid contribution 0.706 -1.177 0.191 1.385 sum 0.133 29.908 5.309 30.375 Atomic orbital electron populations 1.21873 0.93920 1.01690 1.01945 1.20571 0.96266 0.92576 0.96063 1.21430 0.98742 0.91078 0.87042 1.45902 1.52581 1.11169 1.25852 1.16897 0.79305 0.81626 0.83281 1.90768 1.39676 1.67136 1.47131 1.21500 1.09619 0.95071 1.00219 1.23627 0.96071 0.97064 0.88242 1.50905 1.32613 1.12335 1.16183 1.24062 1.02935 0.77259 0.95404 1.23562 1.01600 0.94208 0.98532 1.22735 1.02748 0.94602 0.95992 1.23478 0.96028 0.98599 1.00582 1.81926 1.18487 0.87936 1.18723 1.74646 1.10824 1.24449 1.00251 1.22045 0.99667 0.96990 0.96943 1.20561 0.95307 0.89890 0.88819 1.44290 1.66909 1.20863 1.01177 1.19514 1.19041 0.94344 1.05963 0.91722 1.25758 0.98801 1.00115 1.00195 1.70183 1.29540 1.39840 1.18444 0.85316 0.78723 0.78710 0.78015 1.21520 1.22262 1.19302 1.21068 0.96601 0.92526 0.88190 1.21878 1.00337 0.95956 0.96753 0.91176 0.93415 0.92700 0.90261 0.91935 0.75254 0.75137 0.83732 0.88203 0.87928 0.87566 0.88963 0.89393 0.90054 0.93617 0.92219 0.97715 0.93588 0.94280 0.96085 0.93078 0.89523 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 7.54 71.98 0.54 -3.57 16 2 C -0.05 -1.69 0.53 -52.15 -0.03 -1.72 16 3 C 0.14 3.89 4.56 86.38 0.39 4.29 16 4 N -0.70 -19.55 4.94 -466.29 -2.31 -21.86 16 5 C 0.60 17.07 7.82 86.69 0.68 17.74 16 6 O -0.57 -17.95 16.86 -4.02 -0.07 -18.02 16 7 C -0.12 -3.12 6.99 40.82 0.29 -2.83 16 8 C 0.11 1.91 10.49 83.85 0.88 2.79 16 9 N -0.34 -5.63 3.83 -324.04 -1.24 -6.87 16 10 C 0.10 0.83 5.05 45.51 0.23 1.06 16 11 C -0.14 -0.39 7.47 31.18 0.23 -0.16 16 12 C -0.12 -0.17 8.09 31.18 0.25 0.08 16 13 C -0.15 -0.93 7.88 31.12 0.25 -0.68 16 14 N -0.09 -2.29 13.78 37.02 0.51 -1.78 16 15 N -0.23 -6.41 12.04 -49.99 -0.60 -7.01 16 16 C -0.12 -4.46 4.75 30.67 0.15 -4.31 16 17 C 0.18 8.76 4.84 86.36 0.42 9.18 16 18 N -0.61 -30.73 3.00 -699.08 -2.09 -32.83 16 19 C -0.26 -14.44 9.59 84.04 0.81 -13.64 16 20 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 21 C -0.05 -3.05 4.91 84.86 0.42 -2.64 16 22 N -0.93 -56.39 11.19 21.65 0.24 -56.15 16 23 Si 0.96 46.05 29.59 68.60 2.03 48.08 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.14 5.77 6.04 86.36 0.52 6.29 16 28 C -0.11 -3.55 4.91 30.67 0.15 -3.40 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.70 4.98 -2.39 -0.01 1.69 16 31 H 0.05 1.55 6.86 -2.39 -0.02 1.53 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 11.47 5.84 -92.70 -0.54 10.93 16 35 H 0.23 2.43 6.79 -2.91 -0.02 2.41 16 36 H 0.15 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.10 0.24 6.39 -2.39 -0.02 0.23 16 38 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 2.10 6.82 -2.38 -0.02 2.08 16 45 H 0.00 0.25 6.69 -2.38 -0.02 0.23 16 46 H 0.05 2.59 6.04 -2.39 -0.01 2.58 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.02 0.87 6.69 -2.39 -0.02 0.85 16 49 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 51 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -73.51 396.94 3.05 -70.46 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.41 Total: 17.47 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.17 Total: 8.50 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.49 Total: -126.49 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.07 Total: -18.02 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.51 3.05 -70.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754716387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.300 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds