Wall clock time and date at job start Wed Apr 1 2020 04:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.45806 * 2 1 4 4 N 1.46507 * 109.46963 * 60.03076 * 3 2 1 5 5 C 1.34769 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00169 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00140 * 179.97438 * 5 4 3 8 8 N 1.46501 * 109.47179 * 180.02562 * 7 5 4 9 9 C 1.35316 * 125.86771 * 125.29687 * 8 7 5 10 10 C 1.35352 * 106.17172 * 180.18481 * 9 8 7 11 11 C 1.50697 * 126.75043 * 179.85791 * 10 9 8 12 12 C 1.53005 * 117.50089 * 16.08021 * 11 10 9 13 13 C 1.52995 * 117.50565 * 84.70437 * 11 10 9 14 14 N 1.33773 * 106.49764 * 359.58741 * 10 9 8 15 15 N 1.28633 * 108.88611 * 0.26142 * 14 10 9 16 16 C 1.53030 * 109.44808 * 119.96988 * 2 1 3 17 17 C 1.53196 * 109.31518 * 58.64941 * 16 2 1 18 18 N 1.46927 * 108.77626 * 54.63479 * 17 16 2 19 19 C 1.36935 * 120.62890 * 126.41187 * 18 17 16 20 20 H 1.08004 * 119.99830 * 207.66434 * 19 18 17 21 21 C 1.38808 * 120.00347 * 27.66631 * 19 18 17 22 22 N 1.31624 * 119.99919 * 17.36240 * 21 19 18 23 23 Si 1.86800 * 120.00334 * 197.36389 * 21 19 18 24 24 H 1.48503 * 109.47057 * 59.99591 * 23 21 19 25 25 H 1.48491 * 109.47352 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46875 * 299.99983 * 23 21 19 27 27 C 1.46929 * 118.73594 * 306.39315 * 18 17 16 28 28 C 1.53046 * 109.46059 * 240.03202 * 2 1 3 29 29 H 1.08999 * 109.47121 * 60.00253 * 1 2 3 30 30 H 1.09009 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47270 * 299.99458 * 1 2 3 32 32 H 1.08997 * 109.47284 * 300.03025 * 3 2 1 33 33 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 34 34 H 0.97001 * 119.99803 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.46771 * 59.99832 * 7 5 4 36 36 H 1.09000 * 109.46888 * 299.99943 * 7 5 4 37 37 H 1.07994 * 126.91085 * 0.03681 * 9 8 7 38 38 H 1.09000 * 115.55848 * 230.40095 * 11 10 9 39 39 H 1.09000 * 117.50122 * 214.98407 * 12 11 10 40 40 H 1.08998 * 117.49330 * 0.02562 * 12 11 10 41 41 H 1.09007 * 117.49767 * 0.02562 * 13 11 10 42 42 H 1.08997 * 117.50203 * 144.99315 * 13 11 10 43 43 H 1.09000 * 109.49765 * 178.59968 * 16 2 1 44 44 H 1.09007 * 109.50081 * 298.69453 * 16 2 1 45 45 H 1.08996 * 109.58736 * 294.84677 * 17 16 2 46 46 H 1.09003 * 109.58457 * 174.41933 * 17 16 2 47 47 H 0.96989 * 119.99963 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58579 * 293.81784 * 27 18 17 49 49 H 1.08997 * 109.69890 * 173.46499 * 27 18 17 50 50 H 1.09000 * 109.49568 * 61.30624 * 28 2 1 51 51 H 1.08997 * 109.49393 * 181.40715 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1966 5 6 1.8776 3.4230 1.4102 6 8 2.5751 4.0125 0.6121 7 6 1.3752 4.1333 2.6408 8 7 1.8633 5.5146 2.6409 9 6 1.0980 6.6259 2.7422 10 6 1.9505 7.6762 2.6960 11 6 1.5865 9.1368 2.7683 12 6 0.1886 9.4921 3.2790 13 6 1.4135 9.7539 4.1576 14 7 3.1801 7.1626 2.5794 15 7 3.0943 5.8794 2.5496 16 6 2.0395 -0.7208 1.2500 17 6 1.4990 -2.1542 1.2641 18 7 1.8620 -2.8090 -0.0001 19 6 2.5254 -4.0069 0.0001 20 1 3.1671 -4.2689 -0.8282 21 6 2.3731 -4.8846 1.0646 22 7 1.3598 -4.7448 1.8930 23 14 3.6061 -6.2641 1.3217 24 1 4.9595 -5.6870 1.5232 25 1 3.2215 -7.0552 2.5180 26 1 3.6172 -7.1469 0.1276 27 6 1.4993 -2.1541 -1.2644 28 6 2.0399 -0.7208 -1.2501 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6758 1.9565 -0.8897 33 1 3.1297 1.4428 -0.0005 34 1 0.9942 1.6613 1.8351 35 1 1.7383 3.6191 3.5307 36 1 0.2852 4.1335 2.6406 37 1 0.0231 6.6666 2.8381 38 1 2.0121 9.7667 1.9872 39 1 -0.3054 10.3558 2.8339 40 1 -0.4675 8.6694 3.5629 41 1 1.5634 9.1035 5.0194 42 1 1.7258 10.7896 4.2907 43 1 3.1292 -0.7431 1.2384 44 1 1.6955 -0.1935 2.1399 45 1 0.4141 -2.1346 1.3671 46 1 1.9375 -2.7019 2.0984 47 1 1.2531 -5.3583 2.6366 48 1 0.4144 -2.1345 -1.3676 49 1 1.9360 -2.7011 -2.0999 50 1 1.6960 -0.1934 -2.1398 51 1 3.1296 -0.7430 -1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754717920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:15 Heat of formation + Delta-G solvation = 112.017054 kcal Electronic energy + Delta-G solvation = -30347.989960 eV Core-core repulsion = 26286.293355 eV Total energy + Delta-G solvation = -4061.696605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.50635 -40.14313 -38.62365 -37.64242 -35.26548 -34.65006 -33.30567 -31.06721 -30.96065 -30.01549 -29.26938 -27.18018 -26.55637 -24.39399 -24.10978 -23.09180 -22.53191 -22.09331 -21.11311 -20.77518 -20.38941 -18.27218 -17.89241 -17.76003 -16.52388 -16.28895 -16.10418 -15.77824 -15.49105 -14.91290 -14.89014 -14.77281 -14.34783 -14.12488 -13.84915 -13.67886 -13.54306 -13.14890 -12.89055 -12.70336 -12.59978 -12.07118 -11.96846 -11.78891 -11.55044 -11.44072 -11.39471 -11.24952 -11.13730 -10.83726 -10.75131 -10.72800 -10.62225 -10.50020 -10.28098 -10.26788 -9.97857 -9.86690 -9.59378 -9.50127 -9.26966 -9.18207 -8.49101 -6.70954 -5.84017 -3.25216 1.31766 1.87350 2.25634 2.30233 2.93388 3.35440 3.39430 3.41217 3.43122 3.85663 4.14897 4.29481 4.43960 4.46060 4.46364 4.47752 4.54644 4.86210 4.93468 5.01284 5.06248 5.12420 5.21275 5.35259 5.42308 5.44842 5.48179 5.66185 5.67993 5.73183 5.76170 5.83553 5.88668 5.97554 5.99354 6.05445 6.19000 6.22909 6.27641 6.38793 6.44583 6.51690 6.61272 6.70080 6.79359 6.93040 7.22049 7.30088 7.59492 7.75400 7.90385 8.35019 8.40409 9.17108 9.80528 10.36661 11.24516 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.001795 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.540957 B =15593.179414 C =15887.792873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.131 3.869 4 N -0.714 5.714 5 C 0.498 3.502 6 O -0.513 6.513 7 C 0.095 3.905 8 N -0.280 5.280 9 C -0.050 4.050 10 C 0.009 3.991 11 C -0.071 4.071 12 C -0.170 4.170 13 C -0.165 4.165 14 N -0.265 5.265 15 N -0.049 5.049 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.120 4.120 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.403 0.597 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.189 0.811 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.052 0.948 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 23.366 4.083 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C 0.008 3.992 4 N -0.368 5.368 5 C 0.280 3.720 6 O -0.388 6.388 7 C -0.031 4.031 8 N -0.073 5.073 9 C -0.199 4.199 10 C -0.128 4.128 11 C -0.091 4.091 12 C -0.208 4.208 13 C -0.203 4.203 14 N -0.132 5.132 15 N -0.028 5.028 16 C -0.170 4.170 17 C 0.045 3.955 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.240 0.760 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.206 0.794 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.553 23.133 3.483 24.044 hybrid contribution -0.884 -0.861 0.600 1.372 sum -6.437 22.272 4.083 23.541 Atomic orbital electron populations 1.21948 0.94668 1.03169 1.00152 1.20707 0.95763 0.91813 0.98133 1.21613 0.99306 0.92276 0.85992 1.45971 1.53392 1.10920 1.26481 1.20142 0.81795 0.82880 0.87143 1.90841 1.36305 1.65790 1.45851 1.21917 1.02222 0.78334 1.00636 1.46722 1.06102 1.07260 1.47236 1.23228 0.99886 0.85381 1.11437 1.20981 0.89714 0.95181 1.06966 1.19992 1.00507 0.89383 0.99211 1.23021 0.90465 1.03586 1.03719 1.23000 1.01624 1.01958 0.93694 1.75097 1.21548 0.99768 1.16793 1.78486 0.99877 1.07597 1.16878 1.22267 1.00804 0.99644 0.94253 1.20798 0.96478 0.87759 0.90462 1.44012 1.66806 1.21090 0.99420 1.19151 1.19339 0.93506 1.06180 0.91773 1.25005 0.97112 0.97536 0.99932 1.70011 1.27909 1.38915 1.18006 0.86385 0.81319 0.81822 0.77351 1.21053 1.21659 1.20886 1.20909 0.96392 0.90569 0.90185 1.22006 1.00870 0.98215 0.94931 0.93383 0.90588 0.93764 0.91724 0.91349 0.76040 0.85111 0.84688 0.79409 0.86026 0.87934 0.88604 0.88674 0.88080 0.92435 0.93733 0.96090 0.89593 0.93630 0.96157 0.92860 0.92913 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.54 37.16 0.28 -1.57 16 2 C -0.06 -0.90 0.53 -154.47 -0.08 -0.98 16 3 C 0.13 1.69 4.56 -4.04 -0.02 1.67 16 4 N -0.71 -7.44 4.95 -60.29 -0.30 -7.74 16 5 C 0.50 5.72 7.84 -10.99 -0.09 5.64 16 6 O -0.51 -8.56 15.67 5.55 0.09 -8.47 16 7 C 0.09 0.69 6.94 -5.19 -0.04 0.66 16 8 N -0.28 -3.07 3.20 -62.44 -0.20 -3.27 16 9 C -0.05 -0.45 10.89 -17.04 -0.19 -0.63 16 10 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 11 C -0.07 -0.57 6.33 -91.77 -0.58 -1.15 16 12 C -0.17 -0.87 10.02 -26.73 -0.27 -1.14 16 13 C -0.17 -1.03 10.23 -26.73 -0.27 -1.30 16 14 N -0.27 -3.95 12.41 33.29 0.41 -3.54 16 15 N -0.05 -0.74 12.13 60.35 0.73 -0.01 16 16 C -0.13 -2.16 4.75 -26.61 -0.13 -2.28 16 17 C 0.17 3.69 4.84 -3.71 -0.02 3.68 16 18 N -0.59 -13.85 3.00 -172.31 -0.52 -14.37 16 19 C -0.25 -6.68 9.59 -15.06 -0.14 -6.82 16 20 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -25.20 11.19 55.49 0.62 -24.58 16 23 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 2.84 6.04 -3.71 -0.02 2.82 16 28 C -0.12 -1.91 4.91 -26.61 -0.13 -2.04 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.20 4.98 -51.92 -0.26 0.94 16 31 H 0.04 0.47 6.86 -51.93 -0.36 0.12 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.27 6.16 -40.82 -0.25 3.02 16 35 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.14 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.19 0.86 7.45 -52.49 -0.39 0.47 16 38 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.40 7.22 -51.93 -0.38 0.02 16 41 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.62 6.82 -51.93 -0.35 0.26 16 45 H 0.02 0.47 6.69 -51.93 -0.35 0.12 16 46 H 0.09 2.15 6.04 -51.93 -0.31 1.84 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 49 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -35.14 400.93 -8.52 -43.66 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.03 Total: 0.01 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.35 Total: -3.96 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.75 Total: -53.50 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.14 -8.52 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754717920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.677 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds