Wall clock time and date at job start Wed Apr 1 2020 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.45806 * 2 1 4 4 N 1.46507 * 109.46963 * 60.03076 * 3 2 1 5 5 C 1.34769 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00169 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00140 * 179.97438 * 5 4 3 8 8 N 1.46501 * 109.47179 * 180.02562 * 7 5 4 9 9 C 1.35316 * 125.86771 * 125.29687 * 8 7 5 10 10 C 1.35352 * 106.17172 * 180.18481 * 9 8 7 11 11 C 1.50697 * 126.75043 * 179.85791 * 10 9 8 12 12 C 1.53005 * 117.50089 * 16.08021 * 11 10 9 13 13 C 1.52995 * 117.50565 * 84.70437 * 11 10 9 14 14 N 1.33773 * 106.49764 * 359.58741 * 10 9 8 15 15 N 1.28633 * 108.88611 * 0.26142 * 14 10 9 16 16 C 1.53030 * 109.44808 * 119.96988 * 2 1 3 17 17 C 1.53196 * 109.31518 * 58.64941 * 16 2 1 18 18 N 1.46927 * 108.77626 * 54.63479 * 17 16 2 19 19 C 1.36935 * 120.62890 * 126.41187 * 18 17 16 20 20 H 1.08004 * 119.99830 * 207.66434 * 19 18 17 21 21 C 1.38808 * 120.00347 * 27.66631 * 19 18 17 22 22 N 1.31624 * 119.99919 * 17.36240 * 21 19 18 23 23 Si 1.86800 * 120.00334 * 197.36389 * 21 19 18 24 24 H 1.48503 * 109.47057 * 59.99591 * 23 21 19 25 25 H 1.48491 * 109.47352 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46875 * 299.99983 * 23 21 19 27 27 C 1.46929 * 118.73594 * 306.39315 * 18 17 16 28 28 C 1.53046 * 109.46059 * 240.03202 * 2 1 3 29 29 H 1.08999 * 109.47121 * 60.00253 * 1 2 3 30 30 H 1.09009 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47270 * 299.99458 * 1 2 3 32 32 H 1.08997 * 109.47284 * 300.03025 * 3 2 1 33 33 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 34 34 H 0.97001 * 119.99803 * 359.97438 * 4 3 2 35 35 H 1.09004 * 109.46771 * 59.99832 * 7 5 4 36 36 H 1.09000 * 109.46888 * 299.99943 * 7 5 4 37 37 H 1.07994 * 126.91085 * 0.03681 * 9 8 7 38 38 H 1.09000 * 115.55848 * 230.40095 * 11 10 9 39 39 H 1.09000 * 117.50122 * 214.98407 * 12 11 10 40 40 H 1.08998 * 117.49330 * 0.02562 * 12 11 10 41 41 H 1.09007 * 117.49767 * 0.02562 * 13 11 10 42 42 H 1.08997 * 117.50203 * 144.99315 * 13 11 10 43 43 H 1.09000 * 109.49765 * 178.59968 * 16 2 1 44 44 H 1.09007 * 109.50081 * 298.69453 * 16 2 1 45 45 H 1.08996 * 109.58736 * 294.84677 * 17 16 2 46 46 H 1.09003 * 109.58457 * 174.41933 * 17 16 2 47 47 H 0.96989 * 119.99963 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58579 * 293.81784 * 27 18 17 49 49 H 1.08997 * 109.69890 * 173.46499 * 27 18 17 50 50 H 1.09000 * 109.49568 * 61.30624 * 28 2 1 51 51 H 1.08997 * 109.49393 * 181.40715 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 1.1966 5 6 1.8776 3.4230 1.4102 6 8 2.5751 4.0125 0.6121 7 6 1.3752 4.1333 2.6408 8 7 1.8633 5.5146 2.6409 9 6 1.0980 6.6259 2.7422 10 6 1.9505 7.6762 2.6960 11 6 1.5865 9.1368 2.7683 12 6 0.1886 9.4921 3.2790 13 6 1.4135 9.7539 4.1576 14 7 3.1801 7.1626 2.5794 15 7 3.0943 5.8794 2.5496 16 6 2.0395 -0.7208 1.2500 17 6 1.4990 -2.1542 1.2641 18 7 1.8620 -2.8090 -0.0001 19 6 2.5254 -4.0069 0.0001 20 1 3.1671 -4.2689 -0.8282 21 6 2.3731 -4.8846 1.0646 22 7 1.3598 -4.7448 1.8930 23 14 3.6061 -6.2641 1.3217 24 1 4.9595 -5.6870 1.5232 25 1 3.2215 -7.0552 2.5180 26 1 3.6172 -7.1469 0.1276 27 6 1.4993 -2.1541 -1.2644 28 6 2.0399 -0.7208 -1.2501 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6758 1.9565 -0.8897 33 1 3.1297 1.4428 -0.0005 34 1 0.9942 1.6613 1.8351 35 1 1.7383 3.6191 3.5307 36 1 0.2852 4.1335 2.6406 37 1 0.0231 6.6666 2.8381 38 1 2.0121 9.7667 1.9872 39 1 -0.3054 10.3558 2.8339 40 1 -0.4675 8.6694 3.5629 41 1 1.5634 9.1035 5.0194 42 1 1.7258 10.7896 4.2907 43 1 3.1292 -0.7431 1.2384 44 1 1.6955 -0.1935 2.1399 45 1 0.4141 -2.1346 1.3671 46 1 1.9375 -2.7019 2.0984 47 1 1.2531 -5.3583 2.6366 48 1 0.4144 -2.1345 -1.3676 49 1 1.9360 -2.7011 -2.0999 50 1 1.6960 -0.1934 -2.1398 51 1 3.1296 -0.7430 -1.2381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754717920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:13 Heat of formation + Delta-G solvation = 88.127054 kcal Electronic energy + Delta-G solvation = -30349.025908 eV Core-core repulsion = 26286.293355 eV Total energy + Delta-G solvation = -4062.732553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.28445 -41.16828 -39.89277 -38.15150 -36.66582 -35.44294 -34.74025 -32.74574 -31.69237 -31.57372 -30.14460 -28.57382 -27.69913 -25.74386 -25.03055 -24.02299 -23.66045 -22.94274 -22.31367 -21.77344 -21.18313 -19.65815 -18.90649 -18.47281 -18.13649 -17.13136 -16.84662 -16.73707 -16.66744 -16.31311 -15.76239 -15.59316 -15.47629 -15.32892 -15.13141 -15.01677 -14.79369 -14.45200 -14.07517 -13.92885 -13.43060 -13.22067 -13.12312 -12.94196 -12.65921 -12.55406 -12.54976 -12.37317 -12.28967 -12.22868 -12.10452 -11.90840 -11.83860 -11.79203 -11.47128 -11.41369 -11.17266 -11.11851 -11.04969 -10.80272 -10.47717 -10.16307 -9.97284 -8.62015 -7.86451 -5.29094 0.58088 1.25123 1.43010 1.45761 1.47833 1.49829 1.54067 2.12530 2.51435 2.90382 3.26987 3.27453 3.53948 3.72713 3.74750 3.80405 3.86768 3.91275 3.95810 4.00576 4.03640 4.08405 4.30846 4.41649 4.42280 4.51611 4.61992 4.70863 4.75651 4.80033 4.85400 4.86838 4.87400 4.96932 4.99728 5.08122 5.14281 5.21099 5.24092 5.25940 5.32364 5.32477 5.36175 5.41695 5.53005 5.54973 5.57440 5.68158 5.87958 6.40589 6.42096 7.09183 7.18570 7.52555 7.91374 8.40609 9.18880 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.001795 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.540957 B =15593.179414 C =15887.792873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C 0.144 3.856 4 N -0.702 5.702 5 C 0.498 3.502 6 O -0.571 6.571 7 C 0.093 3.907 8 N -0.279 5.279 9 C -0.031 4.031 10 C -0.010 4.010 11 C -0.097 4.097 12 C -0.143 4.143 13 C -0.168 4.168 14 N -0.312 5.312 15 N -0.105 5.105 16 C -0.118 4.118 17 C 0.177 3.823 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.059 0.941 21 C -0.046 4.046 22 N -0.929 5.929 23 Si 0.959 3.041 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.143 3.857 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.418 0.582 35 H 0.157 0.843 36 H 0.192 0.808 37 H 0.239 0.761 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.037 0.963 44 H 0.077 0.923 45 H 0.012 0.988 46 H 0.046 0.954 47 H 0.250 0.750 48 H 0.025 0.975 49 H 0.044 0.956 50 H 0.080 0.920 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 25.092 4.775 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.053 4.053 3 C 0.020 3.980 4 N -0.356 5.356 5 C 0.283 3.717 6 O -0.449 6.449 7 C -0.031 4.031 8 N -0.073 5.073 9 C -0.181 4.181 10 C -0.148 4.148 11 C -0.118 4.118 12 C -0.181 4.181 13 C -0.205 4.205 14 N -0.178 5.178 15 N -0.083 5.083 16 C -0.157 4.157 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.077 0.923 21 C -0.242 4.242 22 N -0.575 5.575 23 Si 0.788 3.212 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.017 3.983 28 C -0.154 4.154 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.257 0.743 35 H 0.175 0.825 36 H 0.209 0.791 37 H 0.255 0.745 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.030 0.970 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.043 0.957 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.147 24.845 4.179 26.478 hybrid contribution -0.132 -1.388 0.340 1.435 sum -8.279 23.457 4.519 25.282 Atomic orbital electron populations 1.21881 0.93037 1.01934 1.02516 1.20553 0.96841 0.92086 0.95821 1.21268 0.98078 0.91270 0.87411 1.45801 1.53130 1.10808 1.25901 1.20823 0.80560 0.82663 0.87678 1.90834 1.38869 1.67028 1.48203 1.22356 1.05272 0.76483 0.98945 1.47021 1.05392 1.08884 1.45959 1.23977 1.01546 0.83965 1.08608 1.21587 0.89063 0.97112 1.07016 1.20067 1.03511 0.88007 1.00171 1.23173 0.89220 1.04352 1.01306 1.23051 1.02747 1.02124 0.92616 1.75009 1.24191 1.00364 1.18226 1.78402 1.02251 1.07879 1.19786 1.22073 0.99413 0.97032 0.97161 1.20633 0.95699 0.89962 0.88528 1.44276 1.66943 1.20785 1.01330 1.19430 1.19284 0.94658 1.05994 0.92313 1.25648 0.98660 0.99802 1.00084 1.70140 1.29273 1.39743 1.18381 0.85467 0.79246 0.79422 0.77065 1.20958 1.21848 1.20370 1.21033 0.96675 0.92302 0.88241 1.21898 0.99955 0.96259 0.97247 0.91667 0.93506 0.90880 0.91314 0.93421 0.74303 0.82504 0.79063 0.74496 0.86847 0.86319 0.86838 0.89359 0.87215 0.94373 0.90468 0.96959 0.93506 0.94132 0.95708 0.93718 0.90136 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.54 71.98 0.54 -2.59 16 2 C -0.05 -1.38 0.53 -52.16 -0.03 -1.41 16 3 C 0.14 3.40 4.56 86.38 0.39 3.80 16 4 N -0.70 -12.34 4.95 -463.06 -2.29 -14.63 16 5 C 0.50 10.16 7.84 87.66 0.69 10.84 16 6 O -0.57 -18.66 15.67 -3.04 -0.05 -18.71 16 7 C 0.09 0.98 6.94 85.63 0.59 1.58 16 8 N -0.28 -5.47 3.20 -351.46 -1.12 -6.60 16 9 C -0.03 -0.45 10.89 83.49 0.91 0.46 16 10 C -0.01 -0.20 6.88 41.60 0.29 0.08 16 11 C -0.10 -1.44 6.33 -11.54 -0.07 -1.52 16 12 C -0.14 -0.99 10.02 30.60 0.31 -0.68 16 13 C -0.17 -1.81 10.23 30.59 0.31 -1.50 16 14 N -0.31 -9.54 12.41 -48.60 -0.60 -10.15 16 15 N -0.10 -3.17 12.13 37.02 0.45 -2.72 16 16 C -0.12 -3.77 4.75 30.67 0.15 -3.63 16 17 C 0.18 7.74 4.84 86.36 0.42 8.16 16 18 N -0.61 -29.10 3.00 -699.08 -2.09 -31.20 16 19 C -0.26 -14.26 9.59 84.03 0.81 -13.45 16 20 H 0.06 3.16 7.89 -2.91 -0.02 3.14 16 21 C -0.05 -2.53 4.91 84.86 0.42 -2.12 16 22 N -0.93 -53.04 11.19 21.65 0.24 -52.79 16 23 Si 0.96 44.46 29.59 68.60 2.03 46.49 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.14 5.55 6.04 86.36 0.52 6.07 16 28 C -0.11 -3.49 4.91 30.68 0.15 -3.34 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.38 4.98 -2.38 -0.01 1.37 16 31 H 0.07 1.25 6.86 -2.39 -0.02 1.23 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.42 4.87 6.16 -92.71 -0.57 4.30 16 35 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.19 -0.18 8.07 -2.39 -0.02 -0.20 16 37 H 0.24 0.77 7.45 -2.91 -0.02 0.75 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 0.38 7.22 -2.39 -0.02 0.37 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.94 6.82 -2.38 -0.02 1.93 16 45 H 0.01 0.56 6.69 -2.39 -0.02 0.54 16 46 H 0.05 2.41 6.04 -2.39 -0.01 2.39 16 47 H 0.25 13.87 8.31 -92.72 -0.77 13.10 16 48 H 0.03 0.95 6.69 -2.39 -0.02 0.94 16 49 H 0.04 1.77 7.94 -2.39 -0.02 1.75 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -83.95 400.93 3.33 -80.63 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.37 Total: 8.92 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.39 Total: 0.75 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -5.42 Total: -118.08 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -83.95 3.33 -80.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754717920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.753 kcal (2) G-P(sol) polarization free energy of solvation -83.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds