Wall clock time and date at job start Wed Apr 1 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.52249 * 2 1 4 4 N 1.46500 * 109.47703 * 300.08226 * 3 2 1 5 5 C 1.34772 * 120.00183 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00069 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99750 * 179.97438 * 5 4 3 8 8 H 1.08997 * 109.45318 * 60.00568 * 7 5 4 9 9 C 1.53142 * 109.45040 * 179.97438 * 7 5 4 10 10 C 1.53462 * 109.30163 * 189.46846 * 9 7 5 11 11 C 1.50802 * 108.13761 * 311.28763 * 10 9 7 12 12 N 1.29832 * 128.52733 * 195.86033 * 11 10 9 13 13 N 1.28913 * 109.48065 * 179.91075 * 12 11 10 14 14 C 1.30835 * 109.73577 * 0.03475 * 13 12 11 15 15 N 1.34698 * 107.07381 * 0.03520 * 14 13 12 16 16 C 1.46248 * 128.85174 * 179.84861 * 15 14 13 17 17 C 1.53030 * 109.49969 * 120.08600 * 2 1 3 18 18 C 1.53047 * 109.53990 * 58.58554 * 17 2 1 19 19 C 1.53190 * 109.31312 * 61.36395 * 18 17 2 20 20 N 1.46922 * 108.77652 * 305.36824 * 19 18 17 21 21 C 1.36936 * 120.63171 * 233.58964 * 20 19 18 22 22 H 1.08000 * 120.00070 * 27.69408 * 21 20 19 23 23 C 1.38812 * 119.99785 * 207.70254 * 21 20 19 24 24 N 1.31617 * 120.00378 * 17.35072 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 197.35122 * 23 21 20 26 26 H 1.48498 * 109.47223 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46987 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47060 * 299.99503 * 25 23 21 29 29 C 1.46928 * 118.73835 * 53.60711 * 20 19 18 30 30 H 1.09000 * 109.46600 * 299.91598 * 1 2 3 31 31 H 1.08997 * 109.47155 * 59.91135 * 1 2 3 32 32 H 1.08994 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47250 * 60.08870 * 3 2 1 34 34 H 1.09006 * 109.46861 * 180.08166 * 3 2 1 35 35 H 0.97005 * 119.99289 * 0.02562 * 4 3 2 36 36 H 1.08997 * 109.50292 * 309.41913 * 9 7 5 37 37 H 1.09004 * 109.49636 * 69.52379 * 9 7 5 38 38 H 1.09005 * 109.72976 * 70.95366 * 10 9 7 39 39 H 1.09001 * 109.73023 * 191.57819 * 10 9 7 40 40 H 1.08004 * 126.45846 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.61026 * 77.36939 * 16 15 14 42 42 H 1.09000 * 109.57161 * 316.91830 * 16 15 14 43 43 H 1.09004 * 109.46358 * 298.56459 * 17 2 1 44 44 H 1.09004 * 109.46432 * 178.60378 * 17 2 1 45 45 H 1.09002 * 109.49535 * 181.31988 * 18 17 2 46 46 H 1.09002 * 109.49414 * 301.40957 * 18 17 2 47 47 H 1.09000 * 109.58512 * 65.15567 * 19 18 17 48 48 H 1.08992 * 109.58373 * 185.57826 * 19 18 17 49 49 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 50 50 H 1.09008 * 109.58458 * 186.60715 * 29 20 19 51 51 H 1.08996 * 109.70618 * 66.25094 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5521 2.1338 -1.1951 5 6 1.8782 3.4240 -1.4079 6 8 2.5770 4.0124 -0.6102 7 6 1.3753 4.1353 -2.6376 8 1 0.2853 4.1358 -2.6365 9 6 1.8862 5.5790 -2.6364 10 6 1.1870 6.3655 -3.7534 11 6 1.2715 5.5546 -5.0221 12 7 1.0707 5.9425 -6.2447 13 7 1.2426 4.9469 -7.0454 14 6 1.5609 3.8788 -6.3602 15 7 1.5863 4.2351 -5.0614 16 6 1.8840 3.4118 -3.8899 17 6 2.0409 -0.7231 1.2482 18 6 1.5031 -2.1559 1.2658 19 6 2.0140 -2.9040 0.0305 20 7 1.6515 -2.1381 -1.1698 21 6 0.9638 -2.7313 -2.1946 22 1 0.3079 -3.5653 -1.9933 23 6 1.1099 -2.2606 -3.4923 24 7 2.1346 -1.4955 -3.8035 25 14 -0.1482 -2.7131 -4.7970 26 1 -1.4873 -2.2207 -4.3854 27 1 0.2325 -2.0885 -6.0895 28 1 -0.1900 -4.1893 -4.9534 29 6 2.0413 -0.7237 -1.2497 30 1 -0.3632 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6798 1.9557 0.8908 34 1 3.1314 1.4410 -0.0015 35 1 0.9928 1.6632 -1.8329 36 1 1.6675 6.0416 -1.6740 37 1 2.9628 5.5841 -2.8068 38 1 0.1420 6.5289 -3.4899 39 1 1.6849 7.3247 -3.8952 40 1 1.7647 2.8966 -6.7605 41 1 2.9607 3.2609 -3.8129 42 1 1.3833 2.4482 -3.9841 43 1 1.6989 -0.1960 2.1389 44 1 3.1306 -0.7445 1.2351 45 1 1.8482 -2.6629 2.1669 46 1 0.4133 -2.1356 1.2540 47 1 3.0979 -3.0043 0.0864 48 1 1.5554 -3.8918 -0.0140 49 1 2.2364 -1.1663 -4.7103 50 1 1.6006 -0.2730 -2.1390 51 1 3.1272 -0.6440 -1.2995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754732695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:56 Heat of formation + Delta-G solvation = 51.760973 kcal Electronic energy + Delta-G solvation = -32299.212909 eV Core-core repulsion = 28234.903405 eV Total energy + Delta-G solvation = -4064.309505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.36966 -40.23507 -38.66602 -36.88988 -35.01392 -33.77271 -33.37278 -31.85878 -30.99074 -30.01691 -29.25972 -26.75016 -25.98119 -25.46116 -24.94664 -23.35287 -22.35781 -22.30158 -20.89048 -20.50914 -19.64265 -18.20073 -17.51775 -17.13791 -16.77516 -16.36677 -15.87999 -15.64997 -15.13266 -14.76830 -14.53118 -14.45303 -14.24335 -14.13971 -14.03349 -13.75324 -13.52010 -13.29732 -12.90450 -12.58811 -12.36902 -12.30211 -12.17988 -11.75711 -11.70138 -11.50166 -11.45221 -11.28876 -11.09364 -10.99204 -10.78267 -10.54443 -10.44523 -10.33390 -10.24304 -10.23914 -10.01250 -9.92912 -9.66752 -9.52836 -9.24707 -8.95765 -8.63472 -6.81878 -5.96442 -3.37420 1.75358 2.24176 2.58086 2.81655 3.13747 3.24312 3.30579 3.33411 3.92893 4.14711 4.23026 4.30850 4.34217 4.65291 4.77127 4.86102 4.96271 4.99694 5.01556 5.14033 5.22255 5.29191 5.33631 5.36451 5.45100 5.49159 5.64054 5.67015 5.81356 5.81912 5.83427 5.89211 5.94535 6.03091 6.07712 6.10449 6.28338 6.30464 6.40463 6.45255 6.56809 6.69920 6.73929 6.74494 6.83102 6.90945 7.12473 7.38531 7.51774 7.63236 8.15381 8.26888 8.65796 9.04575 9.67659 10.25004 11.11482 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.003893 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.516858 B = 7191.402118 C = 9476.682311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.135 3.865 4 N -0.713 5.713 5 C 0.521 3.479 6 O -0.538 6.538 7 C -0.123 4.123 8 H 0.110 0.890 9 C -0.105 4.105 10 C -0.033 4.033 11 C 0.173 3.827 12 N -0.295 5.295 13 N -0.305 5.305 14 C 0.162 3.838 15 N -0.469 5.469 16 C 0.112 3.888 17 C -0.095 4.095 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.588 5.588 21 C -0.247 4.247 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.904 5.904 25 Si 0.896 3.104 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.187 3.813 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.221 0.779 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.053 0.947 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 9.311 6.150 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C 0.011 3.989 4 N -0.365 5.365 5 C 0.305 3.695 6 O -0.415 6.415 7 C -0.145 4.145 8 H 0.128 0.872 9 C -0.144 4.144 10 C -0.072 4.072 11 C -0.095 4.095 12 N -0.135 5.135 13 N -0.144 5.144 14 C -0.126 4.126 15 N -0.159 5.159 16 C -0.011 4.011 17 C -0.133 4.133 18 C -0.174 4.174 19 C 0.016 3.984 20 N -0.310 5.310 21 C -0.377 4.377 22 H 0.083 0.917 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.726 3.274 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.208 1.208 29 C 0.060 3.940 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.238 0.762 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.362 10.606 5.356 11.959 hybrid contribution -0.528 -1.643 -0.072 1.727 sum -1.890 8.963 5.284 10.575 Atomic orbital electron populations 1.21723 0.94473 1.02751 0.99372 1.21558 0.96480 0.92628 0.99917 1.21431 0.98966 0.92113 0.86346 1.46151 1.52807 1.11345 1.26192 1.19980 0.80627 0.82115 0.86753 1.90709 1.37661 1.66179 1.46973 1.21692 1.03306 0.96996 0.92513 0.87246 1.21553 1.01194 0.91971 0.99674 1.20262 1.03135 0.97461 0.86390 1.24828 1.03345 0.83451 0.97880 1.74041 1.19361 1.22285 0.97820 1.74489 1.17979 0.96073 1.25869 1.26390 1.03752 1.02411 0.80069 1.46128 1.51259 1.10166 1.08378 1.22007 1.03574 0.94201 0.81360 1.21346 0.99977 0.96044 0.95972 1.22047 1.00995 0.95674 0.98724 1.20940 0.96439 0.94281 0.86706 1.43977 1.65288 1.05568 1.16207 1.19159 1.17770 1.14921 0.85824 0.91728 1.24966 0.96987 1.00726 0.96756 1.70046 1.27327 1.38831 1.18688 0.86473 0.81412 0.78521 0.81034 1.21082 1.21577 1.20798 1.20776 0.96176 0.83867 0.93171 0.94468 0.93815 0.90888 0.92070 0.91627 0.75778 0.88486 0.90266 0.88602 0.87814 0.76242 0.88124 0.87203 0.93348 0.92528 0.93133 0.91941 0.96494 0.92885 0.93750 0.89526 0.96448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.81 37.16 0.29 -1.60 16 2 C -0.10 -1.60 0.53 -154.39 -0.08 -1.68 16 3 C 0.14 1.90 4.57 -4.04 -0.02 1.88 16 4 N -0.71 -9.15 4.90 -60.29 -0.30 -9.44 16 5 C 0.52 6.49 7.14 -10.99 -0.08 6.41 16 6 O -0.54 -8.34 15.83 5.56 0.09 -8.25 16 7 C -0.12 -1.19 2.54 -91.54 -0.23 -1.42 16 8 H 0.11 0.92 8.12 -51.93 -0.42 0.50 16 9 C -0.11 -0.94 4.68 -26.42 -0.12 -1.07 16 10 C -0.03 -0.29 6.33 -27.59 -0.17 -0.46 16 11 C 0.17 2.15 7.75 -155.31 -1.20 0.95 16 12 N -0.30 -4.59 12.21 32.76 0.40 -4.19 16 13 N -0.31 -4.81 12.23 29.59 0.36 -4.45 16 14 C 0.16 2.06 12.83 -90.41 -1.16 0.90 16 15 N -0.47 -5.51 3.11 -115.53 -0.36 -5.87 16 16 C 0.11 1.14 6.14 -4.02 -0.02 1.11 16 17 C -0.10 -1.39 4.71 -26.69 -0.13 -1.52 16 18 C -0.14 -2.07 5.74 -26.61 -0.15 -2.22 16 19 C 0.14 2.69 6.52 -3.71 -0.02 2.67 16 20 N -0.59 -12.86 2.43 -172.32 -0.42 -13.28 16 21 C -0.25 -6.05 9.59 -15.06 -0.14 -6.19 16 22 H 0.06 1.59 7.89 -52.49 -0.41 1.17 16 23 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 24 N -0.90 -22.84 11.19 55.49 0.62 -22.22 16 25 Si 0.90 19.70 29.59 -169.99 -5.03 14.67 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.19 3.69 3.73 -3.71 -0.01 3.67 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.64 6.86 -51.93 -0.36 0.29 16 32 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.41 5.14 5.87 -40.82 -0.24 4.90 16 36 H 0.10 0.84 7.79 -51.93 -0.40 0.43 16 37 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.22 2.11 8.06 -52.48 -0.42 1.68 16 41 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 42 H 0.11 1.10 7.87 -51.93 -0.41 0.69 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.97 6.33 -51.93 -0.33 0.64 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 49 H 0.25 6.20 8.31 -40.82 -0.34 5.86 16 50 H 0.09 1.84 4.95 -51.92 -0.26 1.58 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -30.52 391.91 -10.26 -40.78 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.18 Total: 4.91 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.35 Total: 1.44 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.31 Total: -59.46 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.52 -10.26 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754732695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.541 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds