Wall clock time and date at job start Wed Apr 1 2020 04:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.52249 * 2 1 4 4 N 1.46500 * 109.47703 * 300.08226 * 3 2 1 5 5 C 1.34772 * 120.00183 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00069 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99750 * 179.97438 * 5 4 3 8 8 H 1.08997 * 109.45318 * 60.00568 * 7 5 4 9 9 C 1.53142 * 109.45040 * 179.97438 * 7 5 4 10 10 C 1.53462 * 109.30163 * 189.46846 * 9 7 5 11 11 C 1.50802 * 108.13761 * 311.28763 * 10 9 7 12 12 N 1.29832 * 128.52733 * 195.86033 * 11 10 9 13 13 N 1.28913 * 109.48065 * 179.91075 * 12 11 10 14 14 C 1.30835 * 109.73577 * 0.03475 * 13 12 11 15 15 N 1.34698 * 107.07381 * 0.03520 * 14 13 12 16 16 C 1.46248 * 128.85174 * 179.84861 * 15 14 13 17 17 C 1.53030 * 109.49969 * 120.08600 * 2 1 3 18 18 C 1.53047 * 109.53990 * 58.58554 * 17 2 1 19 19 C 1.53190 * 109.31312 * 61.36395 * 18 17 2 20 20 N 1.46922 * 108.77652 * 305.36824 * 19 18 17 21 21 C 1.36936 * 120.63171 * 233.58964 * 20 19 18 22 22 H 1.08000 * 120.00070 * 27.69408 * 21 20 19 23 23 C 1.38812 * 119.99785 * 207.70254 * 21 20 19 24 24 N 1.31617 * 120.00378 * 17.35072 * 23 21 20 25 25 Si 1.86807 * 119.99569 * 197.35122 * 23 21 20 26 26 H 1.48498 * 109.47223 * 60.00170 * 25 23 21 27 27 H 1.48507 * 109.46987 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47060 * 299.99503 * 25 23 21 29 29 C 1.46928 * 118.73835 * 53.60711 * 20 19 18 30 30 H 1.09000 * 109.46600 * 299.91598 * 1 2 3 31 31 H 1.08997 * 109.47155 * 59.91135 * 1 2 3 32 32 H 1.08994 * 109.46844 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47250 * 60.08870 * 3 2 1 34 34 H 1.09006 * 109.46861 * 180.08166 * 3 2 1 35 35 H 0.97005 * 119.99289 * 0.02562 * 4 3 2 36 36 H 1.08997 * 109.50292 * 309.41913 * 9 7 5 37 37 H 1.09004 * 109.49636 * 69.52379 * 9 7 5 38 38 H 1.09005 * 109.72976 * 70.95366 * 10 9 7 39 39 H 1.09001 * 109.73023 * 191.57819 * 10 9 7 40 40 H 1.08004 * 126.45846 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.61026 * 77.36939 * 16 15 14 42 42 H 1.09000 * 109.57161 * 316.91830 * 16 15 14 43 43 H 1.09004 * 109.46358 * 298.56459 * 17 2 1 44 44 H 1.09004 * 109.46432 * 178.60378 * 17 2 1 45 45 H 1.09002 * 109.49535 * 181.31988 * 18 17 2 46 46 H 1.09002 * 109.49414 * 301.40957 * 18 17 2 47 47 H 1.09000 * 109.58512 * 65.15567 * 19 18 17 48 48 H 1.08992 * 109.58373 * 185.57826 * 19 18 17 49 49 H 0.96999 * 120.00020 * 180.02562 * 24 23 21 50 50 H 1.09008 * 109.58458 * 186.60715 * 29 20 19 51 51 H 1.08996 * 109.70618 * 66.25094 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5521 2.1338 -1.1951 5 6 1.8782 3.4240 -1.4079 6 8 2.5770 4.0124 -0.6102 7 6 1.3753 4.1353 -2.6376 8 1 0.2853 4.1358 -2.6365 9 6 1.8862 5.5790 -2.6364 10 6 1.1870 6.3655 -3.7534 11 6 1.2715 5.5546 -5.0221 12 7 1.0707 5.9425 -6.2447 13 7 1.2426 4.9469 -7.0454 14 6 1.5609 3.8788 -6.3602 15 7 1.5863 4.2351 -5.0614 16 6 1.8840 3.4118 -3.8899 17 6 2.0409 -0.7231 1.2482 18 6 1.5031 -2.1559 1.2658 19 6 2.0140 -2.9040 0.0305 20 7 1.6515 -2.1381 -1.1698 21 6 0.9638 -2.7313 -2.1946 22 1 0.3079 -3.5653 -1.9933 23 6 1.1099 -2.2606 -3.4923 24 7 2.1346 -1.4955 -3.8035 25 14 -0.1482 -2.7131 -4.7970 26 1 -1.4873 -2.2207 -4.3854 27 1 0.2325 -2.0885 -6.0895 28 1 -0.1900 -4.1893 -4.9534 29 6 2.0413 -0.7237 -1.2497 30 1 -0.3632 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6798 1.9557 0.8908 34 1 3.1314 1.4410 -0.0015 35 1 0.9928 1.6632 -1.8329 36 1 1.6675 6.0416 -1.6740 37 1 2.9628 5.5841 -2.8068 38 1 0.1420 6.5289 -3.4899 39 1 1.6849 7.3247 -3.8952 40 1 1.7647 2.8966 -6.7605 41 1 2.9607 3.2609 -3.8129 42 1 1.3833 2.4482 -3.9841 43 1 1.6989 -0.1960 2.1389 44 1 3.1306 -0.7445 1.2351 45 1 1.8482 -2.6629 2.1669 46 1 0.4133 -2.1356 1.2540 47 1 3.0979 -3.0043 0.0864 48 1 1.5554 -3.8918 -0.0140 49 1 2.2364 -1.1663 -4.7103 50 1 1.6006 -0.2730 -2.1390 51 1 3.1272 -0.6440 -1.2995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754732695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:55 Heat of formation + Delta-G solvation = 36.132954 kcal Electronic energy + Delta-G solvation = -32299.890591 eV Core-core repulsion = 28234.903405 eV Total energy + Delta-G solvation = -4064.987186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.35220 -41.30164 -39.96239 -37.84920 -36.33511 -34.93632 -34.60989 -33.15026 -32.11216 -31.54161 -30.20103 -27.97818 -27.36762 -26.97850 -25.87216 -24.33076 -23.79539 -23.33199 -22.19709 -21.60451 -20.55187 -19.55603 -18.56510 -18.41659 -18.07643 -17.34648 -17.03964 -16.65147 -16.59422 -15.95760 -15.69720 -15.47926 -15.40331 -15.26428 -15.06950 -15.00934 -14.79424 -14.61741 -14.29190 -13.78933 -13.73307 -13.34632 -13.03644 -13.02247 -12.98791 -12.71190 -12.67701 -12.55245 -12.31080 -12.25586 -12.15769 -12.07499 -11.83696 -11.69948 -11.44996 -11.38885 -11.24428 -11.18849 -10.95201 -10.88277 -10.48040 -10.25072 -10.05293 -8.58910 -7.82169 -5.25160 0.81073 1.29809 1.48191 1.52389 1.56202 1.61866 1.78304 2.14961 2.53763 3.09629 3.29210 3.30670 3.40235 3.49678 3.64948 3.79095 3.96647 3.98522 4.02084 4.07087 4.07787 4.14412 4.26253 4.38619 4.41443 4.52707 4.56678 4.58711 4.74165 4.77256 4.79217 4.83919 4.94156 4.97416 5.01193 5.06436 5.07440 5.14726 5.17496 5.20115 5.30932 5.35426 5.43145 5.48981 5.53819 5.65842 5.75425 5.81591 5.83629 6.44832 6.47721 7.13502 7.22022 7.63850 7.91874 8.44374 9.23101 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.003893 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.516858 B = 7191.402118 C = 9476.682311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C 0.142 3.858 4 N -0.713 5.713 5 C 0.526 3.474 6 O -0.567 6.567 7 C -0.114 4.114 8 H 0.130 0.870 9 C -0.098 4.098 10 C -0.027 4.027 11 C 0.178 3.822 12 N -0.335 5.335 13 N -0.345 5.345 14 C 0.163 3.837 15 N -0.468 5.468 16 C 0.115 3.885 17 C -0.096 4.096 18 C -0.124 4.124 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.257 4.257 22 H 0.058 0.942 23 C -0.033 4.033 24 N -0.925 5.925 25 Si 0.948 3.052 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.197 3.803 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.407 0.593 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.245 0.755 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.007 0.993 48 H 0.048 0.952 49 H 0.251 0.749 50 H 0.070 0.930 51 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 10.046 7.871 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 C 0.018 3.982 4 N -0.364 5.364 5 C 0.312 3.688 6 O -0.446 6.446 7 C -0.135 4.135 8 H 0.148 0.852 9 C -0.137 4.137 10 C -0.066 4.066 11 C -0.091 4.091 12 N -0.174 5.174 13 N -0.183 5.183 14 C -0.126 4.126 15 N -0.158 5.158 16 C -0.008 4.008 17 C -0.134 4.134 18 C -0.163 4.163 19 C 0.010 3.990 20 N -0.326 5.326 21 C -0.387 4.387 22 H 0.076 0.924 23 C -0.230 4.230 24 N -0.571 5.571 25 Si 0.778 3.222 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.214 1.214 29 C 0.071 3.929 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.244 0.756 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.089 0.911 51 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -2.559 11.338 7.091 13.616 hybrid contribution -0.091 -1.966 -0.573 2.050 sum -2.650 9.372 6.519 11.720 Atomic orbital electron populations 1.21642 0.93617 1.01760 1.00627 1.21353 0.96931 0.93010 0.98084 1.21288 0.98180 0.91335 0.87400 1.46149 1.52728 1.11584 1.25924 1.20314 0.79765 0.81666 0.87061 1.90701 1.38916 1.66716 1.48243 1.21650 1.04382 0.96908 0.90568 0.85212 1.21503 1.00554 0.91438 1.00159 1.20443 1.04627 0.97275 0.84284 1.25480 1.01528 0.83841 0.98228 1.73954 1.21341 1.22993 0.99101 1.74400 1.19715 0.97058 1.27128 1.26866 1.02616 1.02743 0.80390 1.46209 1.51006 1.10196 1.08420 1.22026 1.03462 0.94177 0.81126 1.21376 0.99721 0.95733 0.96523 1.21920 1.00922 0.95841 0.97597 1.21087 0.95889 0.94573 0.87430 1.44212 1.65243 1.06658 1.16520 1.19361 1.17757 1.14829 0.86799 0.92382 1.25462 0.98241 1.01213 0.98053 1.70155 1.28386 1.39742 1.18795 0.85653 0.79906 0.77661 0.79007 1.20516 1.21883 1.21397 1.20587 0.93939 0.83439 0.94898 0.91940 0.93829 0.92938 0.90650 0.92973 0.75593 0.87553 0.91309 0.86427 0.86425 0.73915 0.88487 0.86934 0.90406 0.93036 0.90534 0.91824 0.97541 0.93385 0.93977 0.91136 0.99884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.81 71.98 0.56 -2.75 16 2 C -0.09 -2.69 0.53 -52.10 -0.03 -2.72 16 3 C 0.14 3.76 4.57 86.38 0.39 4.15 16 4 N -0.71 -17.25 4.90 -463.06 -2.27 -19.52 16 5 C 0.53 12.20 7.14 87.66 0.63 12.82 16 6 O -0.57 -16.65 15.83 -3.03 -0.05 -16.69 16 7 C -0.11 -1.95 2.54 -11.39 -0.03 -1.98 16 8 H 0.13 1.77 8.12 -2.39 -0.02 1.76 16 9 C -0.10 -1.54 4.68 30.80 0.14 -1.39 16 10 C -0.03 -0.40 6.33 30.04 0.19 -0.21 16 11 C 0.18 4.22 7.75 138.14 1.07 5.29 16 12 N -0.33 -10.33 12.21 -50.28 -0.61 -10.94 16 13 N -0.34 -10.91 12.23 -60.31 -0.74 -11.65 16 14 C 0.16 4.07 12.83 180.27 2.31 6.38 16 15 N -0.47 -10.52 3.11 -519.43 -1.62 -12.14 16 16 C 0.11 2.20 6.14 86.53 0.53 2.73 16 17 C -0.10 -2.56 4.71 30.62 0.14 -2.42 16 18 C -0.12 -3.53 5.74 30.67 0.18 -3.36 16 19 C 0.14 5.09 6.52 86.36 0.56 5.65 16 20 N -0.60 -26.56 2.43 -699.10 -1.70 -28.26 16 21 C -0.26 -12.68 9.59 84.03 0.81 -11.88 16 22 H 0.06 2.88 7.89 -2.91 -0.02 2.86 16 23 C -0.03 -1.66 4.91 84.86 0.42 -1.24 16 24 N -0.92 -47.26 11.19 21.65 0.24 -47.02 16 25 Si 0.95 40.50 29.59 68.60 2.03 42.53 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 29 C 0.20 7.85 3.73 86.36 0.32 8.17 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.19 6.86 -2.39 -0.02 1.18 16 32 H 0.05 1.70 5.97 -2.39 -0.01 1.68 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.41 9.82 5.87 -92.70 -0.54 9.27 16 36 H 0.11 1.54 7.79 -2.39 -0.02 1.52 16 37 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 38 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.24 4.49 8.06 -2.91 -0.02 4.46 16 41 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 42 H 0.11 2.13 7.87 -2.39 -0.02 2.11 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 1.83 6.33 -2.39 -0.02 1.81 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 49 H 0.25 12.42 8.31 -92.71 -0.77 11.65 16 50 H 0.07 3.02 4.95 -2.38 -0.01 3.01 16 51 H -0.02 -0.78 8.14 -2.39 -0.02 -0.79 16 Total: -1.00 -66.70 391.91 3.88 -62.82 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.39 Total: 23.63 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 8.20 Total: 17.25 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -6.69 Total: -129.53 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.69 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -66.70 3.88 -62.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754732695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.952 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds