Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.49525 * 2 1 4 4 N 1.46500 * 109.46921 * 300.06001 * 3 2 1 5 5 C 1.34777 * 119.99689 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00114 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99924 * 180.02562 * 5 4 3 8 8 H 1.09009 * 109.45192 * 300.04210 * 7 5 4 9 9 C 1.53146 * 109.45420 * 180.11019 * 7 5 4 10 10 C 1.53456 * 109.31054 * 170.53112 * 9 7 5 11 11 C 1.50810 * 108.13772 * 48.68917 * 10 9 7 12 12 N 1.29835 * 128.51984 * 164.09572 * 11 10 9 13 13 N 1.28914 * 109.47357 * 180.16079 * 12 11 10 14 14 C 1.30836 * 109.74192 * 359.97438 * 13 12 11 15 15 N 1.34691 * 107.06857 * 359.94547 * 14 13 12 16 16 C 1.46267 * 128.84521 * 180.16086 * 15 14 13 17 17 C 1.53036 * 109.49730 * 120.06222 * 2 1 3 18 18 C 1.53043 * 109.53844 * 58.62241 * 17 2 1 19 19 C 1.53194 * 109.31270 * 61.36075 * 18 17 2 20 20 N 1.46920 * 108.89266 * 305.29383 * 19 18 17 21 21 C 1.36935 * 120.63487 * 233.67846 * 20 19 18 22 22 H 1.08001 * 119.99271 * 27.39843 * 21 20 19 23 23 C 1.38804 * 120.00681 * 207.39654 * 21 20 19 24 24 N 1.31624 * 120.00025 * 17.26539 * 23 21 20 25 25 Si 1.86801 * 120.00311 * 197.26624 * 23 21 20 26 26 H 1.48490 * 109.47145 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46826 * 120.00101 * 25 23 21 28 28 H 1.48498 * 109.47107 * 239.99663 * 25 23 21 29 29 C 1.47210 * 118.55402 * 53.54440 * 20 19 18 30 30 H 1.09002 * 109.46593 * 299.93515 * 1 2 3 31 31 H 1.08995 * 109.46738 * 59.93274 * 1 2 3 32 32 H 1.08991 * 109.47068 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47271 * 60.06445 * 3 2 1 34 34 H 1.09007 * 109.46808 * 180.02562 * 3 2 1 35 35 H 0.96999 * 120.00349 * 0.02562 * 4 3 2 36 36 H 1.08995 * 109.49963 * 290.47513 * 9 7 5 37 37 H 1.09001 * 109.50081 * 50.57857 * 9 7 5 38 38 H 1.08997 * 109.71174 * 289.04107 * 10 9 7 39 39 H 1.09001 * 109.78479 * 168.38286 * 10 9 7 40 40 H 1.07995 * 126.46412 * 179.97438 * 14 13 12 41 41 H 1.08992 * 109.59489 * 43.13214 * 16 15 14 42 42 H 1.09001 * 109.58901 * 282.68228 * 16 15 14 43 43 H 1.08997 * 109.46022 * 298.59688 * 17 2 1 44 44 H 1.09005 * 109.44762 * 178.62893 * 17 2 1 45 45 H 1.08997 * 109.49515 * 301.40943 * 18 17 2 46 46 H 1.08991 * 109.52383 * 181.33296 * 18 17 2 47 47 H 1.08998 * 109.58578 * 65.15808 * 19 18 17 48 48 H 1.09000 * 109.58231 * 185.43798 * 19 18 17 49 49 H 0.96996 * 120.00327 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.53234 * 186.66954 * 29 20 19 51 51 H 1.08999 * 109.56245 * 66.29306 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5514 2.1335 -1.1955 5 6 1.8769 3.4240 -1.4083 6 8 2.5752 4.0128 -0.6105 7 6 1.3732 4.1352 -2.6377 8 1 1.7350 3.6211 -3.5283 9 6 1.8864 5.5781 -2.6385 10 6 1.5751 6.2267 -3.9939 11 6 0.1276 5.9584 -4.3214 12 7 -0.6227 6.5414 -5.2062 13 7 -1.8039 6.0260 -5.1748 14 6 -1.8528 5.0882 -4.2637 15 7 -0.6310 5.0198 -3.7008 16 6 -0.1598 4.1347 -2.6359 17 6 2.0408 -0.7227 1.2486 18 6 1.5037 -2.1557 1.2662 19 6 2.0154 -2.9038 0.0312 20 7 1.6527 -2.1412 -1.1711 21 6 0.9649 -2.7371 -2.1943 22 1 0.3128 -3.5738 -1.9912 23 6 1.1057 -2.2660 -3.4923 24 7 2.1256 -1.4953 -3.8057 25 14 -0.1523 -2.7257 -4.7945 26 1 -1.1937 -3.5957 -4.1914 27 1 -0.7849 -1.4929 -5.3286 28 1 0.5220 -3.4544 -5.8988 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3632 0.5129 0.8906 31 1 -0.3632 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6785 1.9560 0.8905 34 1 3.1307 1.4418 -0.0005 35 1 0.9926 1.6627 -1.8334 36 1 1.3938 6.1398 -1.8448 37 1 2.9637 5.5812 -2.4725 38 1 2.2130 5.7932 -4.7641 39 1 1.7463 7.3016 -3.9366 40 1 -2.7107 4.4829 -4.0111 41 1 -0.5256 3.1234 -2.8126 42 1 -0.5239 4.4947 -1.6737 43 1 1.6983 -0.1954 2.1389 44 1 3.1306 -0.7435 1.2355 45 1 0.4140 -2.1359 1.2540 46 1 1.8483 -2.6627 2.1674 47 1 3.0994 -3.0035 0.0875 48 1 1.5592 -3.8927 -0.0119 49 1 2.2243 -1.1664 -4.7129 50 1 1.6014 -0.2733 -2.1389 51 1 3.1282 -0.6456 -1.2975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754732696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = 52.156550 kcal Electronic energy + Delta-G solvation = -32135.525617 eV Core-core repulsion = 28071.233266 eV Total energy + Delta-G solvation = -4064.292351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.45360 -40.24470 -38.65954 -36.93301 -35.01081 -33.83612 -33.36296 -31.87527 -31.02363 -29.99997 -29.33234 -26.75335 -26.01959 -25.45271 -24.98730 -23.39470 -22.44973 -22.30263 -20.91101 -20.51297 -19.66906 -18.20757 -17.59172 -17.19022 -16.77814 -16.42141 -15.82943 -15.76822 -15.13331 -14.86402 -14.57208 -14.50808 -14.24939 -14.07243 -14.03149 -13.89227 -13.49066 -13.27835 -12.92224 -12.60627 -12.39070 -12.28669 -12.18416 -11.81892 -11.70940 -11.53364 -11.44975 -11.33170 -11.09621 -10.99268 -10.79422 -10.51776 -10.50062 -10.34424 -10.33122 -10.21362 -10.01291 -9.92449 -9.66177 -9.51819 -9.32358 -8.95840 -8.62903 -6.80543 -5.94100 -3.35376 1.66409 2.17260 2.54059 2.74251 3.12977 3.23127 3.34676 3.35179 3.86295 4.09387 4.18367 4.26427 4.35521 4.51770 4.69207 4.78967 4.87966 4.95246 4.99965 5.14878 5.19848 5.27526 5.30233 5.37192 5.45224 5.45591 5.64017 5.67386 5.73400 5.79954 5.82500 5.88905 5.92875 5.99561 6.02419 6.10582 6.27157 6.30442 6.40289 6.44543 6.56820 6.64771 6.70075 6.74577 6.82637 6.91544 7.13712 7.40946 7.51828 7.65525 8.15200 8.28430 8.57785 9.05987 9.69312 10.26929 11.13991 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003565 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.246322 B = 7852.122043 C = 9608.557335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.135 3.865 4 N -0.713 5.713 5 C 0.522 3.478 6 O -0.538 6.538 7 C -0.126 4.126 8 H 0.114 0.886 9 C -0.105 4.105 10 C -0.035 4.035 11 C 0.179 3.821 12 N -0.294 5.294 13 N -0.303 5.303 14 C 0.156 3.844 15 N -0.471 5.471 16 C 0.114 3.886 17 C -0.095 4.095 18 C -0.135 4.135 19 C 0.142 3.858 20 N -0.589 5.589 21 C -0.247 4.247 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.896 3.104 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.185 3.815 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.220 0.780 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 9.756 6.774 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C 0.011 3.989 4 N -0.365 5.365 5 C 0.306 3.694 6 O -0.415 6.415 7 C -0.147 4.147 8 H 0.132 0.868 9 C -0.143 4.143 10 C -0.075 4.075 11 C -0.089 4.089 12 N -0.134 5.134 13 N -0.142 5.142 14 C -0.131 4.131 15 N -0.162 5.162 16 C -0.010 4.010 17 C -0.133 4.133 18 C -0.174 4.174 19 C 0.016 3.984 20 N -0.311 5.311 21 C -0.377 4.377 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.548 5.548 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.217 1.217 29 C 0.059 3.941 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.236 0.764 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.453 11.105 6.081 12.897 hybrid contribution -0.594 -1.595 -0.054 1.703 sum -3.048 9.510 6.027 11.665 Atomic orbital electron populations 1.21722 0.94522 1.02788 0.99259 1.21548 0.96447 0.92643 0.99902 1.21431 0.99076 0.92101 0.86253 1.46149 1.52797 1.11395 1.26141 1.19957 0.80895 0.82151 0.86402 1.90708 1.38022 1.66425 1.46364 1.21712 0.94085 0.99156 0.99794 0.86762 1.21542 1.04016 0.92255 0.96488 1.20300 0.85779 1.03409 0.97970 1.24876 0.97734 0.91475 0.94833 1.74066 0.98018 1.22996 1.18324 1.74483 1.13052 1.09052 1.17619 1.26307 0.89544 1.01658 0.95620 1.46124 1.10742 1.29187 1.30110 1.21965 0.94271 0.94904 0.89838 1.21347 1.00015 0.96045 0.95936 1.22042 1.00975 0.95670 0.98736 1.20934 0.96443 0.94307 0.86718 1.44052 1.65411 1.05521 1.16131 1.19222 1.17968 1.14643 0.85821 0.91616 1.24983 0.97074 1.00677 0.96805 1.70045 1.27601 1.38524 1.18604 0.86318 0.81293 0.77869 0.81922 1.20229 1.21638 1.21679 1.20837 0.96229 0.83840 0.93205 0.94458 0.93892 0.90854 0.92070 0.91610 0.75770 0.90400 0.88322 0.88349 0.87733 0.76383 0.87647 0.88436 0.93352 0.92510 0.91957 0.93128 0.96526 0.92916 0.93734 0.89454 0.96405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.82 37.16 0.29 -1.55 16 2 C -0.10 -1.59 0.53 -154.39 -0.08 -1.67 16 3 C 0.14 1.90 4.57 -4.04 -0.02 1.88 16 4 N -0.71 -9.16 4.90 -60.29 -0.30 -9.45 16 5 C 0.52 6.49 7.14 -10.99 -0.08 6.41 16 6 O -0.54 -8.32 15.83 5.56 0.09 -8.23 16 7 C -0.13 -1.21 2.53 -91.54 -0.23 -1.44 16 8 H 0.11 1.11 8.12 -51.92 -0.42 0.68 16 9 C -0.10 -0.93 4.68 -26.42 -0.12 -1.05 16 10 C -0.04 -0.31 6.34 -27.59 -0.17 -0.48 16 11 C 0.18 2.14 7.75 -155.31 -1.20 0.94 16 12 N -0.29 -4.43 12.21 32.76 0.40 -4.03 16 13 N -0.30 -4.48 12.23 29.58 0.36 -4.12 16 14 C 0.16 1.74 12.83 -90.41 -1.16 0.58 16 15 N -0.47 -4.99 3.11 -115.53 -0.36 -5.35 16 16 C 0.11 0.97 6.14 -4.01 -0.02 0.94 16 17 C -0.10 -1.39 4.71 -26.69 -0.13 -1.52 16 18 C -0.14 -2.07 5.74 -26.61 -0.15 -2.22 16 19 C 0.14 2.70 6.50 -3.71 -0.02 2.68 16 20 N -0.59 -13.03 2.45 -172.10 -0.42 -13.45 16 21 C -0.25 -6.12 9.59 -15.06 -0.14 -6.26 16 22 H 0.07 1.63 7.89 -52.49 -0.41 1.22 16 23 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 24 N -0.90 -23.72 11.18 55.49 0.62 -23.10 16 25 Si 0.90 20.05 29.59 -169.99 -5.03 15.02 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.19 3.73 3.75 -3.56 -0.01 3.72 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.60 6.86 -51.93 -0.36 0.25 16 32 H 0.07 1.23 5.98 -51.93 -0.31 0.92 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.41 5.17 5.87 -40.82 -0.24 4.93 16 36 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.10 0.89 7.79 -51.93 -0.40 0.49 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.22 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.11 0.79 7.87 -51.93 -0.41 0.38 16 42 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 49 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 50 H 0.09 1.91 4.95 -51.93 -0.26 1.66 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -31.59 391.95 -10.26 -41.85 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.18 Total: 4.02 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -3.35 Total: 0.95 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.31 Total: -59.51 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.59 -10.26 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754732696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.007 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds