Wall clock time and date at job start Wed Apr 1 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.49525 * 2 1 4 4 N 1.46500 * 109.46921 * 300.06001 * 3 2 1 5 5 C 1.34777 * 119.99689 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00114 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99924 * 180.02562 * 5 4 3 8 8 H 1.09009 * 109.45192 * 300.04210 * 7 5 4 9 9 C 1.53146 * 109.45420 * 180.11019 * 7 5 4 10 10 C 1.53456 * 109.31054 * 170.53112 * 9 7 5 11 11 C 1.50810 * 108.13772 * 48.68917 * 10 9 7 12 12 N 1.29835 * 128.51984 * 164.09572 * 11 10 9 13 13 N 1.28914 * 109.47357 * 180.16079 * 12 11 10 14 14 C 1.30836 * 109.74192 * 359.97438 * 13 12 11 15 15 N 1.34691 * 107.06857 * 359.94547 * 14 13 12 16 16 C 1.46267 * 128.84521 * 180.16086 * 15 14 13 17 17 C 1.53036 * 109.49730 * 120.06222 * 2 1 3 18 18 C 1.53043 * 109.53844 * 58.62241 * 17 2 1 19 19 C 1.53194 * 109.31270 * 61.36075 * 18 17 2 20 20 N 1.46920 * 108.89266 * 305.29383 * 19 18 17 21 21 C 1.36935 * 120.63487 * 233.67846 * 20 19 18 22 22 H 1.08001 * 119.99271 * 27.39843 * 21 20 19 23 23 C 1.38804 * 120.00681 * 207.39654 * 21 20 19 24 24 N 1.31624 * 120.00025 * 17.26539 * 23 21 20 25 25 Si 1.86801 * 120.00311 * 197.26624 * 23 21 20 26 26 H 1.48490 * 109.47145 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46826 * 120.00101 * 25 23 21 28 28 H 1.48498 * 109.47107 * 239.99663 * 25 23 21 29 29 C 1.47210 * 118.55402 * 53.54440 * 20 19 18 30 30 H 1.09002 * 109.46593 * 299.93515 * 1 2 3 31 31 H 1.08995 * 109.46738 * 59.93274 * 1 2 3 32 32 H 1.08991 * 109.47068 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47271 * 60.06445 * 3 2 1 34 34 H 1.09007 * 109.46808 * 180.02562 * 3 2 1 35 35 H 0.96999 * 120.00349 * 0.02562 * 4 3 2 36 36 H 1.08995 * 109.49963 * 290.47513 * 9 7 5 37 37 H 1.09001 * 109.50081 * 50.57857 * 9 7 5 38 38 H 1.08997 * 109.71174 * 289.04107 * 10 9 7 39 39 H 1.09001 * 109.78479 * 168.38286 * 10 9 7 40 40 H 1.07995 * 126.46412 * 179.97438 * 14 13 12 41 41 H 1.08992 * 109.59489 * 43.13214 * 16 15 14 42 42 H 1.09001 * 109.58901 * 282.68228 * 16 15 14 43 43 H 1.08997 * 109.46022 * 298.59688 * 17 2 1 44 44 H 1.09005 * 109.44762 * 178.62893 * 17 2 1 45 45 H 1.08997 * 109.49515 * 301.40943 * 18 17 2 46 46 H 1.08991 * 109.52383 * 181.33296 * 18 17 2 47 47 H 1.08998 * 109.58578 * 65.15808 * 19 18 17 48 48 H 1.09000 * 109.58231 * 185.43798 * 19 18 17 49 49 H 0.96996 * 120.00327 * 179.97438 * 24 23 21 50 50 H 1.09007 * 109.53234 * 186.66954 * 29 20 19 51 51 H 1.08999 * 109.56245 * 66.29306 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5514 2.1335 -1.1955 5 6 1.8769 3.4240 -1.4083 6 8 2.5752 4.0128 -0.6105 7 6 1.3732 4.1352 -2.6377 8 1 1.7350 3.6211 -3.5283 9 6 1.8864 5.5781 -2.6385 10 6 1.5751 6.2267 -3.9939 11 6 0.1276 5.9584 -4.3214 12 7 -0.6227 6.5414 -5.2062 13 7 -1.8039 6.0260 -5.1748 14 6 -1.8528 5.0882 -4.2637 15 7 -0.6310 5.0198 -3.7008 16 6 -0.1598 4.1347 -2.6359 17 6 2.0408 -0.7227 1.2486 18 6 1.5037 -2.1557 1.2662 19 6 2.0154 -2.9038 0.0312 20 7 1.6527 -2.1412 -1.1711 21 6 0.9649 -2.7371 -2.1943 22 1 0.3128 -3.5738 -1.9912 23 6 1.1057 -2.2660 -3.4923 24 7 2.1256 -1.4953 -3.8057 25 14 -0.1523 -2.7257 -4.7945 26 1 -1.1937 -3.5957 -4.1914 27 1 -0.7849 -1.4929 -5.3286 28 1 0.5220 -3.4544 -5.8988 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3632 0.5129 0.8906 31 1 -0.3632 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6785 1.9560 0.8905 34 1 3.1307 1.4418 -0.0005 35 1 0.9926 1.6627 -1.8334 36 1 1.3938 6.1398 -1.8448 37 1 2.9637 5.5812 -2.4725 38 1 2.2130 5.7932 -4.7641 39 1 1.7463 7.3016 -3.9366 40 1 -2.7107 4.4829 -4.0111 41 1 -0.5256 3.1234 -2.8126 42 1 -0.5239 4.4947 -1.6737 43 1 1.6983 -0.1954 2.1389 44 1 3.1306 -0.7435 1.2355 45 1 0.4140 -2.1359 1.2540 46 1 1.8483 -2.6627 2.1674 47 1 3.0994 -3.0035 0.0875 48 1 1.5592 -3.8927 -0.0119 49 1 2.2243 -1.1664 -4.7129 50 1 1.6014 -0.2733 -2.1389 51 1 3.1282 -0.6456 -1.2975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754732696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:00 Heat of formation + Delta-G solvation = 35.280644 kcal Electronic energy + Delta-G solvation = -32136.257411 eV Core-core repulsion = 28071.233266 eV Total energy + Delta-G solvation = -4065.024145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.33605 -41.30109 -39.95496 -37.84164 -36.33845 -34.93864 -34.61590 -33.15391 -32.10886 -31.53922 -30.19765 -27.95800 -27.38854 -26.98320 -25.86736 -24.33369 -23.80231 -23.32592 -22.20073 -21.60572 -20.55222 -19.55223 -18.54505 -18.47107 -18.05699 -17.33640 -16.98734 -16.78184 -16.53397 -15.92501 -15.77648 -15.47601 -15.33804 -15.23542 -15.12434 -15.01337 -14.74926 -14.65176 -14.29566 -13.79259 -13.75197 -13.30295 -13.07646 -13.01268 -12.99560 -12.73101 -12.66996 -12.58055 -12.32416 -12.23282 -12.11123 -12.07854 -11.83392 -11.69784 -11.42872 -11.39082 -11.24413 -11.16402 -10.95418 -10.88550 -10.51630 -10.24353 -10.05470 -8.61256 -7.84050 -5.27177 0.83063 1.33640 1.44202 1.51218 1.58060 1.59767 1.80809 2.14973 2.52425 3.08765 3.28767 3.29791 3.40523 3.50240 3.63730 3.81172 3.96452 3.98854 4.03070 4.06999 4.07636 4.15042 4.25223 4.38638 4.43316 4.52229 4.56371 4.58671 4.72518 4.77683 4.79528 4.83880 4.93544 4.96775 5.01344 5.06111 5.06992 5.15217 5.17860 5.20299 5.30982 5.35029 5.43610 5.49173 5.53942 5.65099 5.74935 5.81524 5.86545 6.42211 6.47612 7.13409 7.19429 7.66056 7.90166 8.42791 9.21284 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003565 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.246322 B = 7852.122043 C = 9608.557335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C 0.142 3.858 4 N -0.712 5.712 5 C 0.527 3.473 6 O -0.567 6.567 7 C -0.119 4.119 8 H 0.115 0.885 9 C -0.097 4.097 10 C -0.030 4.030 11 C 0.177 3.823 12 N -0.337 5.337 13 N -0.350 5.350 14 C 0.167 3.833 15 N -0.470 5.470 16 C 0.116 3.884 17 C -0.096 4.096 18 C -0.123 4.123 19 C 0.135 3.865 20 N -0.605 5.605 21 C -0.251 4.251 22 H 0.062 0.938 23 C -0.039 4.039 24 N -0.930 5.930 25 Si 0.951 3.049 26 H -0.271 1.271 27 H -0.286 1.286 28 H -0.302 1.302 29 C 0.196 3.804 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.407 0.593 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.257 0.743 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.005 0.995 48 H 0.048 0.952 49 H 0.248 0.752 50 H 0.068 0.932 51 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 9.977 8.515 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C 0.018 3.982 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.446 6.446 7 C -0.141 4.141 8 H 0.133 0.867 9 C -0.135 4.135 10 C -0.069 4.069 11 C -0.092 4.092 12 N -0.176 5.176 13 N -0.188 5.188 14 C -0.122 4.122 15 N -0.160 5.160 16 C -0.007 4.007 17 C -0.134 4.134 18 C -0.162 4.162 19 C 0.009 3.991 20 N -0.327 5.327 21 C -0.381 4.381 22 H 0.080 0.920 23 C -0.235 4.235 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.230 1.230 29 C 0.071 3.929 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.244 0.756 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.273 0.727 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.023 0.977 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.087 0.913 51 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges -3.739 11.318 7.845 14.269 hybrid contribution -0.125 -1.771 -0.553 1.859 sum -3.864 9.547 7.292 12.620 Atomic orbital electron populations 1.21647 0.93293 1.01889 1.00826 1.21338 0.97211 0.92922 0.97820 1.21294 0.98128 0.91386 0.87409 1.46144 1.52718 1.11603 1.25887 1.20286 0.80076 0.81724 0.86621 1.90700 1.39323 1.66976 1.47618 1.21645 0.95069 0.99195 0.98169 0.86734 1.21476 1.03873 0.91669 0.96500 1.20404 0.84142 1.04377 0.97998 1.25354 0.98635 0.91125 0.94119 1.73968 0.98745 1.24680 1.20206 1.74384 1.13548 1.11029 1.19822 1.27016 0.90491 1.00575 0.94091 1.46243 1.10519 1.29030 1.30255 1.22092 0.93223 0.95411 0.89932 1.21381 0.99663 0.95776 0.96557 1.21912 1.01013 0.95791 0.97504 1.21095 0.95861 0.94658 0.87441 1.44303 1.65331 1.06624 1.16480 1.19446 1.17636 1.14333 0.86695 0.92046 1.25519 0.98419 1.01258 0.98266 1.70179 1.29039 1.39872 1.18540 0.85458 0.79501 0.77539 0.79443 1.19521 1.21199 1.23016 1.20636 0.93793 0.83488 0.95032 0.91665 0.93564 0.92921 0.90354 0.93270 0.75593 0.90404 0.88435 0.87431 0.86392 0.72708 0.86181 0.86872 0.90227 0.93207 0.91645 0.90503 0.97677 0.93314 0.94258 0.91346 1.00191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 7.82 71.98 0.56 -2.61 16 2 C -0.09 -2.66 0.53 -52.10 -0.03 -2.68 16 3 C 0.14 3.75 4.57 86.38 0.39 4.14 16 4 N -0.71 -17.24 4.90 -463.05 -2.27 -19.51 16 5 C 0.53 12.30 7.14 87.66 0.63 12.92 16 6 O -0.57 -16.76 15.83 -3.03 -0.05 -16.81 16 7 C -0.12 -2.09 2.53 -11.39 -0.03 -2.12 16 8 H 0.11 2.06 8.12 -2.38 -0.02 2.04 16 9 C -0.10 -1.57 4.68 30.80 0.14 -1.42 16 10 C -0.03 -0.48 6.34 30.04 0.19 -0.29 16 11 C 0.18 4.06 7.75 138.14 1.07 5.13 16 12 N -0.34 -10.09 12.21 -50.28 -0.61 -10.71 16 13 N -0.35 -10.21 12.23 -60.32 -0.74 -10.94 16 14 C 0.17 3.42 12.83 180.28 2.31 5.74 16 15 N -0.47 -9.08 3.11 -519.42 -1.62 -10.70 16 16 C 0.12 1.68 6.14 86.52 0.53 2.21 16 17 C -0.10 -2.55 4.71 30.62 0.14 -2.41 16 18 C -0.12 -3.49 5.74 30.67 0.18 -3.31 16 19 C 0.13 5.08 6.50 86.36 0.56 5.64 16 20 N -0.60 -26.87 2.45 -698.39 -1.71 -28.58 16 21 C -0.25 -12.47 9.59 84.03 0.81 -11.66 16 22 H 0.06 3.05 7.89 -2.91 -0.02 3.03 16 23 C -0.04 -1.97 4.92 84.86 0.42 -1.55 16 24 N -0.93 -49.67 11.18 21.65 0.24 -49.43 16 25 Si 0.95 41.24 29.59 68.60 2.03 43.26 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 C 0.20 7.97 3.75 86.31 0.32 8.30 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.18 6.86 -2.39 -0.02 1.17 16 32 H 0.05 1.65 5.98 -2.39 -0.01 1.63 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.41 9.81 5.87 -92.71 -0.54 9.27 16 36 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 37 H 0.10 1.64 7.79 -2.39 -0.02 1.62 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.26 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.12 1.43 7.87 -2.39 -0.02 1.42 16 42 H 0.11 1.35 8.12 -2.39 -0.02 1.33 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.06 1.84 6.34 -2.39 -0.02 1.83 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 49 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 50 H 0.07 3.03 4.95 -2.38 -0.01 3.02 16 51 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 Total: -1.00 -69.99 391.95 3.87 -66.12 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.39 Total: 21.28 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 8.20 Total: 16.01 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.71 Total: -129.87 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -69.99 3.87 -66.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754732696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.399 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds